ViewGene
Locus Name:
GeneID:
Location:

GeneID:1158
TrivialName: PA14_22730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22730
PAO1 Ortholog Locus:PA3206
Sequence Length:1338
Protein Length:445
Start: 1978005
Stop: 1976668
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06594.1|AE004744_9 (AE004744) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 441/445 (99%), Positives = 442/445 (99%)
Sequence:
ATGCGTTCACTCTTCTGGCGAATCCTCGCCGCCTTCTGGCTGGCCCTGCTGCTGGTAGCCGGGCTTTCCATC
CTGCTGGGTCGCGCGCTGAACCAAGACACCTGGATCATCGCCCGCCATCCCGGCCTGAAGGATCTCGCCGAG
CAGTGGACCGCCCTCTACGAAGAACAGGGCAGCTACGCGGCCCAGGGCTTGCTGGAGCAACGCCGCCGCGAC
TACGGGATTTCCATCCAGGTGCTCGACGAAAGCGGCCAGCGCCTGGTCGACGGCACCTACCTGCCGCGCCCC
CGCCACCGCCCGCCGCGCACCAGCGACCGCAACCTGCCGCGCTTCCCCTGGCGCCAACTGAGCCAGGAATAC
GTCAGCCCGCAGAGCAACCATACCTATCTGTTCATCTACCGCATCCCGCACCCGGAGCTGGAGGCCTGGCAC
CGCGGCAGCCTGCTCTGGCCGCTCAGCGCGCTGGGCATCGCACTGGTGGTGCTGACCCTGTTCAGCCTGCTG
CTGACGCTGTCCATCACCCGTCCGCTGAACCGTCTGCGGCGCGCCGTGCACGACCTCGGCCAGACCGCCTAC
CAGAAGGACAGCCTGGCCCGCCTGGCGCGGCGCGGCGATGAACTGGGCACCCTGGCGCGCGATTTCAACCGC
ATGGGCGAACGCCTGCAAAGCCTGATCGGCAGCCAGCGACAGTTGCTCCGCGACGTGTCCCACGAACTGCGC
TCGCCGTTGGCGCGCCTGCGCATCGCCCTGGCCCTGGCCGAACGCGCCGAACCGCAAGCGCGGGCGCAGATG
TGGCCGCGCCTGGAACAGGAATGCGACCGCCTGGAAGCGCTGATCGGCGAGATCCTCGCCCTCGCCCGGCTC
GACGCCGAACCCGGCGCGAGCCAACGGATCGCCCTGCTGCCGCTGCTCCAGCGGCTGCGCGAAGACGCCCTG
CTGCTGGCTCCGGAGCAGGATATCCGCCTGGAAGTGGCGCCTGACCTGAGCATCGACGGCTGGCCGGACATG
TTCGAGCGCGCGGTGGACAACCTGCTGCGCAACGCCGTGCGCTTCAACCCCGCCGGCCAACCGCTGGAGGTG
CGCGCCAGCAGCGCCGGCGACTACCTGCGCCTGAGCGTCCGCGACCATGGGCCGGGCATCGCCGTCGAACTG
CAGGAGCAGTTGGGCGAACCGTTCTTCCGCGCACCCAACCAGAGCAGCCCGGGACACGGCCTGGGCCTGGCC
ATCGCCCGCCGCGCCATCGAGCGCCACGGCGGGCACCTGCGCCTGGGCAACCATCCCGACGGCGGCTTCATC
GCCACCCTCAGCCTGCCGCTACGGCGCAAGGCGACCGAATAA
Translation:
MRSLFWRILAAFWLALLLVAGLSILLGRALNQDTWIIARHPGLKDLAEQWTALYEEQGSYAAQGLLEQRRRD
YGISIQVLDESGQRLVDGTYLPRPRHRPPRTSDRNLPRFPWRQLSQEYVSPQSNHTYLFIYRIPHPELEAWH
RGSLLWPLSALGIALVVLTLFSLLLTLSITRPLNRLRRAVHDLGQTAYQKDSLARLARRGDELGTLARDFNR
MGERLQSLIGSQRQLLRDVSHELRSPLARLRIALALAERAEPQARAQMWPRLEQECDRLEALIGEILALARL
DAEPGASQRIALLPLLQRLREDALLLAPEQDIRLEVAPDLSIDGWPDMFERAVDNLLRNAVRFNPAGQPLEV
RASSAGDYLRLSVRDHGPGIAVELQEQLGEPFFRAPNQSSPGHGLGLAIARRAIERHGGHLRLGNHPDGGFI
ATLSLPLRRKATE*
AnnotationID:1167GeneID:1158
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 08:08:50
Gene Name:
Confidence Code:3
GeneProduct:putative two component sensor histidine kinase protein
Cell Localization:()
Synonyms:PA3206
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00075,smart00387,pfam02518
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70079.1|AE016647_9 (AE016790) sensor histidine kinase [Pseudomonas putida KT2440]
          Length = 446

 Score =  594 bits (1531), Expect = e-169
 Identities = 300/439 (68%), Positives = 348/439 (79%), Gaps = 1/439 (0%)

>gb|AAO55323.1| (AE016862) sensor histidine kinase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 450

 Score =  582 bits (1499), Expect = e-165
 Identities = 294/441 (66%), Positives = 347/441 (78%), Gaps = 3/441 (0%)








 
Structural Features:
cd00075, HATPase_c, Histidine kinase-like ATPases
CD-Length = 103 residues, 100.0% aligned
Score = 92.3 bits (229), Expect = 9e-20

smart00387, HATPase_c, Histidine kinase-like ATPases; Histidine kinase-, 
DNA gyrase B-, phytochrome-like ATPases.
CD-Length = 112 residues,  98.2% aligned
Score =  108 bits (270), Expect = 2e-24
Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 2/110 (1%)

pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, 
and HSP90-like ATPase. 
CD-Length = 111 residues,  98.2% aligned
Score =  102 bits (256), Expect = 8e-23
Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 2/109 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2319




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19461




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32338




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1158_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1158
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2085
                           PA3206_tr
                           translation of PA3206
                           445
                           99.10
                           99.32
                           0
                           2265.0
     

     
     
69760
                           gb|AAG06594.1|AE004744_9
                           (AE004744) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           445
                           99.10
                           99.32
                           0
                           2265.0
     

     
     
69761
                           gb|AAN70079.1|AE016647_9
                           (AE016790) sensor histidine kinase [Pseudomonas putida KT2440]
                           453
                           66.66
                           77.26
                           15
                           1531.0
     

     
     
69762
                           gb|AAO55323.1|
                           (AE016862) sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           452
                           65.26
                           77.21
                           9
                           1495.0
     

     






      

          
GC ORFID: 44160How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3206Glimmer Score: 

          
Start: 2975926Stop: 2977263

          
Length: 1338


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3206 translation of PA3206Homolog Bit Score 877.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1552 (ORF: BLASTX 575.0), t_PA3206 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTTCACTCTTCTGGCGAATCCTCGCCGCCTTCTGGCTGGCCCTGCTGCTGGTAGCCGGGCTTTCCATC 
CTGCTGGGTCGCGCGCTGAACCAAGACACCTGGATCATCGCCCGCCATCCCGGCCTGAAGGATCTCGCCGAG 
CAGTGGACCGCCCTCTACGAAGAACAGGGCAGCTACGCGGCCCAGGGCTTGCTGGAGCAACGCCGCCGCGAC 
TACGGGATTTCCATCCAGGTGCTCGACGAAAGCGGCCAGCGCCTGGTCGACGGCACCTACCTGCCGCGCCCC 
CGCCACCGCCCGCCGCGCACCAGCGACCGCAACCTGCCGCGCTTCCCCTGGCGCCAACTGAGCCAGGAATAC 
GTCAGCCCGCAGAGCAACCATACCTATCTGTTCATCTACCGCATCCCGCACCCGGAGCTGGAGGCCTGGCAC 
CGCGGCAGCCTGCTCTGGCCGCTCAGCGCGCTGGGCATCGCACTGGTGGTGCTGACCCTGTTCAGCCTGCTG 
CTGACGCTGTCCATCACCCGTCCGCTGAACCGTCTGCGGCGCGCCGTGCACGACCTCGGCCAGACCGCCTAC 
CAGAAGGACAGCCTGGCCCGCCTGGCGCGGCGCGGCGATGAACTGGGCACCCTGGCGCGCGATTTCAACCGC 
ATGGGCGAACGCCTGCAAAGCCTGATCGGCAGCCAGCGACAGTTGCTCCGCGACGTGTCCCACGAACTGCGC 
TCGCCGTTGGCGCGCCTGCGCATCGCCCTGGCCCTGGCCGAACGCGCCGAACCGCAAGCGCGGGCGCAGATG 
TGGCCGCGCCTGGAACAGGAATGCGACCGCCTGGAAGCGCTGATCGGCGAGATCCTCGCCCTCGCCCGGCTC 
GACGCCGAACCCGGCGCGAGCCAACGGATCGCCCTGCTGCCGCTGCTCCAGCGGCTGCGCGAAGACGCCCTG 
CTGCTGGCTCCGGAGCAGGATATCCGCCTGGAAGTGGCGCCTGACCTGAGCATCGACGGCTGGCCGGACATG 
TTCGAGCGCGCGGTGGACAACCTGCTGCGCAACGCCGTGCGCTTCAACCCCGCCGGCCAACCGCTGGAGGTG 
CGCGCCAGCAGCGCCGGCGACTACCTGCGCCTGAGCGTCCGCGACCATGGGCCGGGCATCGCCGTCGAACTG 
CAGGAGCAGTTGGGCGAACCGTTCTTCCGCGCACCCAACCAGAGCAGCCCGGGACACGGCCTGGGCCTGGCC 
ATCGCCCGCCGCGCCATCGAGCGCCACGGCGGGCACCTGCGCCTGGGCAACCATCCCGACGGCGGCTTCATC 
GCCACCCTCAGCCTGCCGCTACGGCGCAAGGCGACCGAATAA