ViewGene
Locus Name:
GeneID:
Location:

GeneID:1157
TrivialName: PA14_38560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38560
PAO1 Ortholog Locus:PA2006
Sequence Length:1353
Protein Length:450
Start: 3438790
Stop: 3440142
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05394.1|AE004627_2 (AE004627) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 448/450 (99%), Positives = 450/450 (100%)
Sequence:
ATGCACAACCAGATCGCCAGCTTTCGCGCGGCGCTCGACGCGCGCCCCGTGTCCCGCTACCAGTGGCTGTTG
CTGCTGCTCCTCGCCCTGTTGCTGGTCACCGATGGCTACGATGCCCAGGTGCTCGGCTACGTGGTGCCGACC
CTGGCCCAGGAATGGGGCCTGGACAAGGCCGCGTTCGGCCCGGTGTTCAGCGCCAACCTGTTCGGCCTGACC
GTCGGTTCGCTGCTGGTGACGCCGCTGGCGGACCGCTTCGGCATCCGCCGGGTGCTGCTCTGCTGCGTGCTG
ATCTACGCCAGCCTGACCGTCCTGATGGTCTTCGCCGGTTCCCTGGAAAACCTGATGCTGGCGCGCTTCGTC
TGCGGCATCGGAATGGGCGGGGCGATGCCCAGCGCCATGGCGCTGATGGCCGAGTATTCGCCACCGCGCCTG
CGTACCCTGATGGTCACCCTGGCGGCCTGCGGTTTCTCCTTCGGCGGCGCCGCCGGCGGTTTCGTCGCCGCC
GCCTTCATGGACGGCTTCGGCTGGCAGGCGGTGTTCCTCGCCGgcgGCgTCACCCCGTTGCTGCTGTTCCCC
TTCCTCCTCCTGTTCCTCCCGGAGTCGCTGCCGCGCCTGCTCCGCGACGCACCGCCCTATGCCCGCCTGCGC
CAGCTCAGCGAGCGTATGGCGCCGGGCTGGCAGCCGCCGCCGGCACAGGCCGACGCCGAGCCGGCGGCGAGC
CTGACCGTGCTGGAGCTGTTCCGCCACGGTTACGCGCGGCCGACCCTGCTGCTCTGGGCGACCTTCTTCGTC
AGCCTGATCCTGCTCTACTTCATGGTCAGCTGGCTGCCCTCGCTGCTCCAGGAAAGCGGCCTGACACGCAAT
GCGGCGAACCTGGCGACCTCGATGTTCCTCTTCGCCGGCACCCTCGGCGCGATGCTCCTGGCCTGGCTCGCC
GACCGCCTGCGCAGCAAGGTCCGCCTGCTGGCGGCGATTCTCGCCGGCGCCGCGCTGTTCACCCTGCTCCTC
GGCCTCAACCACGACCAGCCGCGCTGGCTGCTGGCGTTCGTCTTCGCCGCCGGCTTCTGCATCATCGGCGGG
CAGTTGACCCTGAACGCCTTCGCCAGCAACTTCTACCCGGCCCAGGTACGCGCCACCGGCACCGGCTGGGCG
CTGGGCGTGGGCCGCTTCGGTTcgATCCTCGGCCCACTGTTCGGCAGCCTGCTGCTGGGCATGCACATATCC
GTGGAGAACATCTTCATGCTTGCGGCGATTCCCGCCGGGCTCGCCGCACTACTGATCCTCCAGGTCCGCTCG
CCCGCCGCCCAGGCGCAGCGGGAAAGCGCCGCCGCGCTGGCCGTCGAGGAATCCTGA
Translation:
MHNQIASFRAALDARPVSRYQWLLLLLLALLLVTDGYDAQVLGYVVPTLAQEWGLDKAAFGPVFSANLFGLT
VGSLLVTPLADRFGIRRVLLCCVLIYASLTVLMVFAGSLENLMLARFVCGIGMGGAMPSAMALMAEYSPPRL
RTLMVTLAACGFSFGGAAGGFVAAAFMDGFGWQAVFLAGGVTPLLLFPFLLLFLPESLPRLLRDAPPYARLR
QLSERMAPGWQPPPAQADAEPAASLTVLELFRHGYARPTLLLWATFFVSLILLYFMVSWLPSLLQESGLTRN
AANLATSMFLFAGTLGAMLLAWLADRLRSKVRLLAAILAGAALFTLLLGLNHDQPRWLLAFVFAAGFCIIGG
QLTLNAFASNFYPAQVRATGTGWALGVGRFGSILGPLFGSLLLGMHISVENIFMLAAIPAGLAALLILQVRS
PAAQAQRESAAALAVEES*
AnnotationID:1166GeneID:1157
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 18:06:19
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:pcaK
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative 4-hydroxybenzoate transporter
Functional Category Confidence Code:5
COGs:COG2271
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD14795.1| (AL646062) PUTATIVE 4-HYDROXYBENZOATE TRANSPORTER TRANSMEMBRANE
           PROTEIN [Ralstonia solanacearum]
          Length = 454

 Score =  320 bits (819), Expect = 1e-86
 Identities = 176/449 (39%), Positives = 255/449 (56%), Gaps = 8/449 (1%)






 
Structural Features:
COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]
CD-Length = 448 residues,  89.5% aligned
Score =  109 bits (273), Expect = 9e-25
Identities = 105/416 (25%), Positives = 169/416 (40%), Gaps = 27/416 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2317




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19459




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32722




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1157_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1157
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2083
                           PA2006_tr
                           translation of PA2006
                           450
                           99.55
                           99.99
                           0
                           2265.0
     

     
     
69756
                           gb|AAG05394.1|AE004627_2
                           (AE004627) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           450
                           99.55
                           99.99
                           0
                           2265.0
     

     
     
69757
                           gb|AAQ58667.1|
                           (AE016913) 4-hydroxybenzoate transporter [Chromobacterium violaceum ATCC 12472]
                           460
                           41.73
                           55.21
                           35
                           831.0
     

     
     
2084
                           PA2472_tr
                           translation of PA2472
                           465
                           40.86
                           56.12
                           32
                           826.0
     

     
     
69758
                           gb|AAG05860.1|AE004675_1
                           (AE004675) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           465
                           40.86
                           56.12
                           32
                           826.0
     

     






      

          
GC ORFID: 44159How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2006Glimmer Score: 

          
Start: 1515121Stop: 1513769

          
Length: 1353


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2006 translation of PA2006Homolog Bit Score 877.0

          
Other Homologs:  t_PA2472 (ORF: BLASTX 317.0), t_PA2006 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACAACCAGATCGCCAGCTTTCGCGCGGCGCTCGACGCGCGCCCCGTGTCCCGCTACCAGTGGCTGTTG 
CTGCTGCTCCTCGCCCTGTTGCTGGTCACCGATGGCTACGATGCCCAGGTGCTCGGCTACGTGGTGCCGACC 
CTGGCCCAGGAATGGGGCCTGGACAAGGCCGCGTTCGGCCCGGTGTTCAGCGCCAACCTGTTCGGCCTGACC 
GTCGGTTCGCTGCTGGTGACGCCGCTGGCGGACCGCTTCGGCATCCGCCGGGTGCTGCTCTGCTGCGTGCTG 
ATCTACGCCAGCCTGACCGTCCTGATGGTCTTCGCCGGTTCCCTGGAAAACCTGATGCTGGCGCGCTTCGTC 
TGCGGCATCGGAATGGGCGGGGCGATGCCCAGCGCCATGGCGCTGATGGCCGAGTATTCGCCACCGCGCCTG 
CGTACCCTGATGGTCACCCTGGCGGCCTGCGGTTTCTCCTTCGGCGGCGCCGCCGGCGGTTTCGTCGCCGCC 
GCCTTCATGGACGGCTTCGGCTGGCAGGCGGTGTTCCTCGCCGgcgGCgTCACCCCGTTGCTGCTGTTCCCC 
TTCCTCCTCCTGTTCCTCCCGGAGTCGCTGCCGCGCCTGCTCCGCGACGCACCGCCCTATGCCCGCCTGCGC 
CAGCTCAGCGAGCGTATGGCGCCGGGCTGGCAGCCGCCGCCGGCACAGGCCGACGCCGAGCCGGCGGCGAGC 
CTGACCGTGCTGGAGCTGTTCCGCCACGGTTACGCGCGGCCGACCCTGCTGCTCTGGGCGACCTTCTTCGTC 
AGCCTGATCCTGCTCTACTTCATGGTCAGCTGGCTGCCCTCGCTGCTCCAGGAAAGCGGCCTGACACGCAAT 
GCGGCGAACCTGGCGACCTCGATGTTCCTCTTCGCCGGCACCCTCGGCGCGATGCTCCTGGCCTGGCTCGCC 
GACCGCCTGCGCAGCAAGGTCCGCCTGCTGGCGGCGATTCTCGCCGGCGCCGCGCTGTTCACCCTGCTCCTC 
GGCCTCAACCACGACCAGCCGCGCTGGCTGCTGGCGTTCGTCTTCGCCGCCGGCTTCTGCATCATCGGCGGG 
CAGTTGACCCTGAACGCCTTCGCCAGCAACTTCTACCCGGCCCAGGTACGCGCCACCGGCACCGGCTGGGCG 
CTGGGCGTGGGCCGCTTCGGTTcgATCCTCGGCCCACTGTTCGGCAGCCTGCTGCTGGGCATGCACATATCC 
GTGGAGAACATCTTCATGCTTGCGGCGATTCCCGCCGGGCTCGCCGCACTACTGATCCTCCAGGTCCGCTCG 
CCCGCCGCCCAGGCGCAGCGGGAAAGCGCCGCCGCGCTGGCCGTCGAGGAATCCTGA