ViewGene
Locus Name:
GeneID:
Location:

GeneID:1156
TrivialName: PA14_39360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39360
PAO1 Ortholog Locus:PA1945
Sequence Length:1329
Protein Length:442
Start: 3504904
Stop: 3503576
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05333.1|AE004621_4 (AE004621) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 439/442 (99%), Positives = 441/442 (99%)
Sequence:
ATGTTAGATGCATCGAACCTCCGCCGTCTGCTGGTGGTGGACCCGTGCGACGATTGCCGGCGCCTGTTGCCG
GGCCTTCGCGAGGCGGGTTGGGCAGTGGACAGCTGCGCGCTGGAAACGGCGCGCGAACGCGCTTGCGACGTC
GGTCTGCTGCGCCTGCGGCCGTTCCACCTGGAGCGGCCGGAGACGGTGAAGGACCTGATCAGCCGCAGCGGC
ACCGAGTGGATCGCCGTGCTCAGCCCGGACACCTTGCCGCTGAATGGCGTCGGCGATTTCGTCTGCGAATGG
TTCTTCGACTTCCATACCTTGCCGTTCGACATGGCGCGGGTGCAGGTGACCCTCGGCCGCGCCTTCGGCATG
GCCCGCCTGCGCGGGCGCGGCACGGTGCCCGGCGATGCCGAGGGCGAGCACGAACTGCTCGGCGAGAGCCTG
GCCGTACGCGACCTGCGCCGGCTGCTGGCGAAGCTGGCACCGACCGACTCGCCGGTACTGATCCGGGGCGAG
AGCGGCACCGGCAAGGAACTGGTCGCGCGTACCCTGCACCGGCAGTCGCGGCGCGTGGACAAGCCGTTCGTC
GCGATCAACTGCGGGGCGATTCCCGAGCACCTGATCCAGTCCGAGCTGTTCGGCCACGAGAAGGGCGCCTTC
ACCGGCGCGCACCAGCGCAAGGTCGGACGGATCGAGGCGGCCGACGGCGGCACCCTGTTCCTCGACGAGATC
GGCGACCTGCCGCTGGAGTTGCAGGCCAACCTGTTGCGCTTTCTCCAGGAACAGCAGATCGAGCGGGTCGGC
GGTAGCCGGCCGGTCGAGGTGGACGTGCGGGTGCTGGCGGCGACCCATGTCGACCTGGAGGCGGCGATCGAC
GCCGGGACGTTCCGCGAGGACCTCTACTACCGGCTCAACGTCCTGCAGGTCGGCACCGCGCCGTTGCGCGAA
CGGAGCGAGGACCTGCCGCTGCTGGCCAATCATTTCTCCCGGCTCTACAGCCTGGAGACCGGCCGCCGCCCG
CGCCGCTTCAGCGAGGACGCGCTGGCGGCGATGGCGATGCACGCCTGGCCGGGCAACGTCCGCGAACTGGCC
AACCGGGTGCGTCGCGGGTTGGTCCTGGCAGAGGGAAAGCAGATCGAGGCCCAGGACCTCGGCCTGGAATGC
GCGCGCGGCGACGGCCCGCCGTTGTCCAGCCTGGAGGTCTACAAGCTCTGCGCCGAGCGCCAGGCGATGTGC
GACGCGCTGGCCCGCTACGGCGACAACCTCAGCGTGGCCGCGCGGATGCTCGGGGTGTCGCGGCCGACCTTC
TACCGCCTGTTGCACAAGCACCGGTTGCGCTGA
Translation:
MLDASNLRRLLVVDPCDDCRRLLPGLREAGWAVDSCALETARERACDVGLLRLRPFHLERPETVKDLISRSG
TEWIAVLSPDTLPLNGVGDFVCEWFFDFHTLPFDMARVQVTLGRAFGMARLRGRGTVPGDAEGEHELLGESL
AVRDLRRLLAKLAPTDSPVLIRGESGTGKELVARTLHRQSRRVDKPFVAINCGAIPEHLIQSELFGHEKGAF
TGAHQRKVGRIEAADGGTLFLDEIGDLPLELQANLLRFLQEQQIERVGGSRPVEVDVRVLAATHVDLEAAID
AGTFREDLYYRLNVLQVGTAPLRERSEDLPLLANHFSRLYSLETGRRPRRFSEDALAAMAMHAWPGNVRELA
NRVRRGLVLAEGKQIEAQDLGLECARGDGPPLSSLEVYKLCAERQAMCDALARYGDNLSVAARMLGVSRPTF
YRLLHKHRLR*
AnnotationID:1165GeneID:1156
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 13:01:57
Gene Name:
Confidence Code:3
GeneProduct:putative sigma-54 dependent transcriptional regulator
Cell Localization:()
Synonyms:PA1945
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2204
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69104.1|AE016544_2 (AE016787) sigma-54 dependent transcriptional regulator
           [Pseudomonas putida KT2440]
          Length = 441

 Score =  676 bits (1744), Expect = 0.0
 Identities = 336/435 (77%), Positives = 373/435 (85%), Gaps = 1/435 (0%)

>emb|CAD14888.1| (AL646063) PUTATIVE SIGMA-54 INTERACTING TRANSCRIPTION REGULATOR
           PROTEIN [Ralstonia solanacearum]
          Length = 458

 Score =  320 bits (821), Expect = 8e-87
 Identities = 184/382 (48%), Positives = 238/382 (62%), Gaps = 10/382 (2%)








 
Structural Features:
COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, 
and DNA-binding domains [Signal transduction mechanisms]
CD-Length = 464 residues,  98.3% aligned
Score =  447 bits (1151), Expect = 1e-126
Identities = 212/457 (46%), Positives = 287/457 (62%), Gaps = 20/457 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2315




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19457




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32774




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1156_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1156
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2062
                           PA1945_tr
                           translation of PA1945
                           442
                           99.32
                           99.77
                           0
                           2267.0
     

     
     
69170
                           gb|AAG05333.1|AE004621_4
                           (AE004621) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           442
                           99.32
                           99.77
                           0
                           2267.0
     

     
     
69171
                           gb|AAN69104.1|AE016544_2
                           (AE016787) sigma-54 dependent transcriptional regulator [Pseudomonas putida KT2440]
                           442
                           76.24
                           84.84
                           1
                           1745.0
     

     
     
69172
                           gb|AAO56631.1|
                           (AE016867) sigma-54 dependent transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           442
                           57.01
                           72.17
                           8
                           1261.0
     

     
     
69173
                           gb|AAQ58364.1|
                           (AE016912) probable transcriptional regulatory protein [Chromobacterium violaceum ATCC 12472]
                           452
                           43.36
                           58.18
                           18
                           852.0
     

     






      

          
GC ORFID: 44158How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1945Glimmer Score: 

          
Start: 1449007Stop: 1450335

          
Length: 1329


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1945 translation of PA1945Homolog Bit Score 877.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7248 (ORF: BLASTX 494.0), t_PA4547 (ORF: BLASTX 280.0), psyr_15may02_Scaffold2_revised_gene3558 (ORF: BLASTX 269.0), t_PA5511 (ORF: BLASTX 261.0), t_PA1335 (ORF: BLASTX 249.0), psyr_15may02_Scaffold5_revised_gene6135 (ORF: BLASTX 249.0), t_PA5166 (ORF: BLASTX 245.0), psyr_15may02_Scaffold14_revised_gene2286 (ORF: BLASTX 241.0), psyr_15may02_Scaffold2_revised_gene3179 (ORF: BLASTX 234.0), t_PA5483 (ORF: BLASTX 233.0), psyr_15may02_Scaffold2_revised_gene4053 (ORF: BLASTX 224.0), psyr_15may02_Scaffold2_revised_gene3237 (ORF: BLASTX 197.0), t_PA1196 (ORF: BLASTX 193.0), t_PA3932 (ORF: BLASTX 174.0), t_PA1945 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTAGATGCATCGAACCTCCGCCGTCTGCTGGTGGTGGACCCGTGCGACGATTGCCGGCGCCTGTTGCCG 
GGCCTTCGCGAGGCGGGTTGGGCAGTGGACAGCTGCGCGCTGGAAACGGCGCGCGAACGCGCTTGCGACGTC 
GGTCTGCTGCGCCTGCGGCCGTTCCACCTGGAGCGGCCGGAGACGGTGAAGGACCTGATCAGCCGCAGCGGC 
ACCGAGTGGATCGCCGTGCTCAGCCCGGACACCTTGCCGCTGAATGGCGTCGGCGATTTCGTCTGCGAATGG 
TTCTTCGACTTCCATACCTTGCCGTTCGACATGGCGCGGGTGCAGGTGACCCTCGGCCGCGCCTTCGGCATG 
GCCCGCCTGCGCGGGCGCGGCACGGTGCCCGGCGATGCCGAGGGCGAGCACGAACTGCTCGGCGAGAGCCTG 
GCCGTACGCGACCTGCGCCGGCTGCTGGCGAAGCTGGCACCGACCGACTCGCCGGTACTGATCCGGGGCGAG 
AGCGGCACCGGCAAGGAACTGGTCGCGCGTACCCTGCACCGGCAGTCGCGGCGCGTGGACAAGCCGTTCGTC 
GCGATCAACTGCGGGGCGATTCCCGAGCACCTGATCCAGTCCGAGCTGTTCGGCCACGAGAAGGGCGCCTTC 
ACCGGCGCGCACCAGCGCAAGGTCGGACGGATCGAGGCGGCCGACGGCGGCACCCTGTTCCTCGACGAGATC 
GGCGACCTGCCGCTGGAGTTGCAGGCCAACCTGTTGCGCTTTCTCCAGGAACAGCAGATCGAGCGGGTCGGC 
GGTAGCCGGCCGGTCGAGGTGGACGTGCGGGTGCTGGCGGCGACCCATGTCGACCTGGAGGCGGCGATCGAC 
GCCGGGACGTTCCGCGAGGACCTCTACTACCGGCTCAACGTCCTGCAGGTCGGCACCGCGCCGTTGCGCGAA 
CGGAGCGAGGACCTGCCGCTGCTGGCCAATCATTTCTCCCGGCTCTACAGCCTGGAGACCGGCCGCCGCCCG 
CGCCGCTTCAGCGAGGACGCGCTGGCGGCGATGGCGATGCACGCCTGGCCGGGCAACGTCCGCGAACTGGCC 
AACCGGGTGCGTCGCGGGTTGGTCCTGGCAGAGGGAAAGCAGATCGAGGCCCAGGACCTCGGCCTGGAATGC 
GCGCGCGGCGACGGCCCGCCGTTGTCCAGCCTGGAGGTCTACAAGCTCTGCGCCGAGCGCCAGGCGATGTGC 
GACGCGCTGGCCCGCTACGGCGACAACCTCAGCGTGGCCGCGCGGATGCTCGGGGTGTCGCGGCCGACCTTC 
TACCGCCTGTTGCACAAGCACCGGTTGCGCTGA