ViewGene
Locus Name:
GeneID:
Location:

GeneID:1154
TrivialName: PA14_73400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73400
PAO1 Ortholog Locus:PA5567
Sequence Length:1368
Protein Length:455
Start: 6535001
Stop: 6533634
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08952.1|AE004968_6 (AE004968) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 452/455 (99%), Positives = 454/455 (99%)
Sequence:
ATGCAAGCCGCCACCGAAACCATCGTCGCGATCGCTACCGCCCAGGGCCGCGGCGGCGTGGGAATCGTCCGC
ATCTCCGGACCTCTCGCCGGACAGATCGCAGTGGCCGTGAGCGGACGCCAGCTGAAAGCCCGGCATGCGCAT
TACGGACCGTTCCTCGATGCCGGTGGGCAGGTGATCGACGAAGGCCTGTCACTGTATTTCCCCGGCCCGAAC
TCGTTCACCGGCGAAGACGTACTCGAACTGCAGGGGCACGGCGGCCCCGTGGTACTCGACCTGCTGGTGCAG
CGTTGTCTGGAACTGGGCGCCCGCCAGGCGCGACCGGGCGAGTTCAGCGAGCGCGCGTTCCTCAACGACAAG
CTCGACCTGGCCCAGGCCGAAGCCATCGCCGATCTGATCGAGGCCAGCTCGGAGCAGGCCGCGCGCAATGCA
TTGCGTTCCCTGCAGGGCGAATTCTCGCGCCGGGTACATGCATTGACCGAGCAACTGATTTCCCTGCGCATC
TATGTCGAAGCCGCCATCGACTTCCCCGAGGAAGAAATCGACTTCCTCGCCGATGGCCATGTACTGGGGCTT
CTGGAAAAAGTACGCACAGAGTTATCCACAGTGCAGCGCGAAGCTTCCCAAGGCGCCCTGCTGCGCGACGGC
ATGACCGTGGTCATCGCCGGACGACCGAATGCCGGCAAGTCCAGCCTGCTGAATGCCCTGGCCGGTCGCGAG
GCGGCCATCGTCACGGACATAGCCGGCACCACCCGCGATGTACTGCGCGAACATATCCACATCGATGGCATG
CCCCTGCATGTGGTGGACACCGCAGGCCTGCGGGATACCGAGGACCATGTGGAAAAGATCGGCGTGGAACGT
GCGCTGAAAGCCATCGGCGAAGCCGATCGTGTGCTGCTGGTGGTGGACGCCACCGCCCCGGAAGCAGCGGAC
CCGTTTTCCCTATGGCCGGAGTTCCTCGACCAGCGACCGGAACCGGGCAAGGTCACCCTGATCCGCAACAAG
GCGGATTTGTCCACAGAGTCCATTGGCCTCGAGGAAAGCGCGGACGGCCACGTCACCATCACCCTCTCGGCG
CGCACCGGCGCCGGCCTGGAGCTGCTGCGCGAACACCTGAAGGCCTGCATGGGCTTCGAACAGACCGCGGAA
AGCGGTTTCAGCGCCCGCCGGCGCCACCTGGAGGCGCTGCGCCAGGCTGGCCAGGCGCTGGAGCATGGCCAC
AGCCAACTTATCCACAATGGCGCAGGCGAGCTGCTGGCCGAGGATCTGCGCCAGGCCCAGCAGCACCTGGGT
GAAATCACCGGCGCATTCACCCCCGACGACCTGCTGGGTCGCATCTTCTCGAGTTTCTGCATCGGCAAGTAA
Translation:
MQAATETIVAIATAQGRGGVGIVRISGPLAGQIAVAVSGRQLKARHAHYGPFLDAGGQVIDEGLSLYFPGPN
SFTGEDVLELQGHGGPVVLDLLVQRCLELGARQARPGEFSERAFLNDKLDLAQAEAIADLIEASSEQAARNA
LRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPEEEIDFLADGHVLGLLEKVRTELSTVQREASQGALLRDG
MTVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVER
ALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTITLSA
RTGAGLELLREHLKACMGFEQTAESGFSARRRHLEALRQAGQALEHGHSQLIHNGAGELLAEDLRQAQQHLG
EITGAFTPDDLLGRIFSSFCIGK*
AnnotationID:1163GeneID:1154
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 09:09:05
Gene Name:
Confidence Code:3
GeneProduct:putative GTPase for tRNA modification and thiophene and furan oxidation
Cell Localization:()
Synonyms:thdF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative GTP-binding protein in thiophene and furan oxidation
Functional Category Confidence Code:5
COGs:COG0486
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO59024.1| (AE016876) tRNA modification GTPase TrmE [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 456

 Score =  746 bits (1926), Expect = 0.0
 Identities = 383/456 (83%), Positives = 415/456 (91%), Gaps = 1/456 (0%)

>gb|AAN65639.1|AE016190_5 (AE016774) tRNA modification GTPase [Pseudomonas putida KT2440]
          Length = 456

 Score =  739 bits (1908), Expect = 0.0
 Identities = 376/456 (82%), Positives = 411/456 (90%), Gaps = 1/456 (0%)

>gb|AAN45201.1|AE015383_1 (AE015383) GTP-binding protein in thiophene and furan oxidation
           [Shigella flexneri 2a str. 301]
          Length = 454

 Score =  585 bits (1507), Expect = e-166
 Identities = 304/451 (67%), Positives = 361/451 (80%), Gaps = 2/451 (0%)








 
Structural Features:
COG0486, ThdF, Predicted GTPase 
CD-Length = 454 residues,  99.3% aligned
Score =  572 bits (1477), Expect = 2e-164
Identities = 242/455 (53%), Positives = 312/455 (68%), Gaps = 8/455 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2311




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19453




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33349




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1154_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1154
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2059
                           PA5567_tr
                           translation of PA5567
                           455
                           99.34
                           99.78
                           0
                           2268.0
     

     
     
69109
                           gb|AAG08952.1|AE004968_6
                           (AE004968) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           455
                           99.34
                           99.78
                           0
                           2268.0
     

     
     
69110
                           gb|AAO59024.1|
                           (AE016876) tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato str. DC3000]
                           456
                           83.99
                           91.00
                           1
                           1928.0
     

     
     
69111
                           gb|AAN65639.1|AE016190_5
                           (AE016774) tRNA modification GTPase [Pseudomonas putida KT2440]
                           456
                           82.45
                           90.13
                           1
                           1910.0
     

     
     
69112
                           emb|CAA44418.1|
                           (X62540) unnamed protein product [Pseudomonas putida]
                           456
                           82.45
                           90.13
                           1
                           1910.0
     

     






      

          
GC ORFID: 44156How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5567Glimmer Score: 

          
Start: 5798690Stop: 5797323

          
Length: 1368


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5567 translation of PA5567Homolog Bit Score 878.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4119 (ORF: BLASTX 743.0), t_PA5567 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGCCGCCACCGAAACCATCGTCGCGATCGCTACCGCCCAGGGCCGCGGCGGCGTGGGAATCGTCCGC 
ATCTCCGGACCTCTCGCCGGACAGATCGCAGTGGCCGTGAGCGGACGCCAGCTGAAAGCCCGGCATGCGCAT 
TACGGACCGTTCCTCGATGCCGGTGGGCAGGTGATCGACGAAGGCCTGTCACTGTATTTCCCCGGCCCGAAC 
TCGTTCACCGGCGAAGACGTACTCGAACTGCAGGGGCACGGCGGCCCCGTGGTACTCGACCTGCTGGTGCAG 
CGTTGTCTGGAACTGGGCGCCCGCCAGGCGCGACCGGGCGAGTTCAGCGAGCGCGCGTTCCTCAACGACAAG 
CTCGACCTGGCCCAGGCCGAAGCCATCGCCGATCTGATCGAGGCCAGCTCGGAGCAGGCCGCGCGCAATGCA 
TTGCGTTCCCTGCAGGGCGAATTCTCGCGCCGGGTACATGCATTGACCGAGCAACTGATTTCCCTGCGCATC 
TATGTCGAAGCCGCCATCGACTTCCCCGAGGAAGAAATCGACTTCCTCGCCGATGGCCATGTACTGGGGCTT 
CTGGAAAAAGTACGCACAGAGTTATCCACAGTGCAGCGCGAAGCTTCCCAAGGCGCCCTGCTGCGCGACGGC 
ATGACCGTGGTCATCGCCGGACGACCGAATGCCGGCAAGTCCAGCCTGCTGAATGCCCTGGCCGGTCGCGAG 
GCGGCCATCGTCACGGACATAGCCGGCACCACCCGCGATGTACTGCGCGAACATATCCACATCGATGGCATG 
CCCCTGCATGTGGTGGACACCGCAGGCCTGCGGGATACCGAGGACCATGTGGAAAAGATCGGCGTGGAACGT 
GCGCTGAAAGCCATCGGCGAAGCCGATCGTGTGCTGCTGGTGGTGGACGCCACCGCCCCGGAAGCAGCGGAC 
CCGTTTTCCCTATGGCCGGAGTTCCTCGACCAGCGACCGGAACCGGGCAAGGTCACCCTGATCCGCAACAAG 
GCGGATTTGTCCACAGAGTCCATTGGCCTCGAGGAAAGCGCGGACGGCCACGTCACCATCACCCTCTCGGCG 
CGCACCGGCGCCGGCCTGGAGCTGCTGCGCGAACACCTGAAGGCCTGCATGGGCTTCGAACAGACCGCGGAA 
AGCGGTTTCAGCGCCCGCCGGCGCCACCTGGAGGCGCTGCGCCAGGCTGGCCAGGCGCTGGAGCATGGCCAC 
AGCCAACTTATCCACAATGGCGCAGGCGAGCTGCTGGCCGAGGATCTGCGCCAGGCCCAGCAGCACCTGGGT 
GAAATCACCGGCGCATTCACCCCCGACGACCTGCTGGGTCGCATCTTCTCGAGTTTCTGCATCGGCAAGTAA