ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1153

TrivialName: PA14_42920

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_42920

PAO1 Ortholog Locus: PA1667

Sequence Length: 1332

Protein Length: 443

Start: 3817960

Stop: 3816629

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05056.1|AE004594_8 (AE004594) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 441/443 (99%), Positives = 442/443 (99%)

Sequence:

ATGAACGTGCACAAGATCGTCTGGCAGGAAGGCATGCTGCTGCGCCCGCAGCATCTGCAACACAACGACCGC
TACTACGACAACCAGATGAAGGCCCGGACCCAGTTGCTGGGCAGCTACAACTGGGGCTTCCTCGCCCTGGAG
CTGGACCGCCAGTTCCTCAACATGGGCAAGCTGGTGATCAGCCAGGCCTCCGGCGTACTGCCCGACGGCAGC
CTGTTCGAACTCGGCGGCAACACCGAGCCGCTCGCCCTCGACGTGCCGCCCAATACCTCGAACGTGCCGATC
TACCTGGCCCTGCCGCTGGTCACCGGTAACCACATCGAGGCGCGCCGGCCGGAGCAGGCCGAGGTCCTGGCG
CGCTATACCGCCTACGATCTGGAGGTGGCGGACTCCAACGCCGGCGAGGATTCCATGGTGCAGGTCAGCTGC
GCGCGGCCGGATTTTCGCCTGCTGCTCGGCGAGCAGCAGAGCGACCAGGCCTACGTCAAACTGAAGGTGGCG
GTGGTGCTGGATACCACGCCGGACGGGGTGATCAGCCTCGACCCCGACTTCGTGCCGAGCTACCTCCACGCC
CACGCATCCGCCTACCTGCTGTCCTGCCTGAAGGAGGTGATCAGCATGCTCGGCCATCGCGGCGACACCATC
GCCGAGCGTATCCGGTCCAATGGCAAGGTCGGCGGCGCGGAGGTCGGCGATTTCATGATGCTGCAACTGATC
AATCGCACCGAGTTGCTGCTGCGCCACTACCTGGGATTGGAGCAGGTGCATCCGGAGCAGTTGTACCGGGTG
CTGCTGACCATGCTCGGCGACCTCGCCACCTTCGGCAGCGAGAGCAAGCGTCCGCGCCTGGACAGCCGTTAC
CAGCACAGCGACCAGGGCGCCAGCTTCCGCAGGCTGATGGAGGCGATTCGCCAGGTCCTGTCGATGGTGCTC
GAGCAGCATGCCATCGAACTGCCTCTCCAGGCCCGCCAGTACGGCATCCTGGTCTCGCCCCTGCACGACCAC
AAGCTGCTCGGCAGCGCCTCGTTCGTGCTCGCCGCCAGTGCCAATTGCGAGTCGGAGGAACTGCGCCAGCGC
CTGCCCGCGCATCTCAAGGTGGGTGCGGTCGAGCACATTCGCCAGTTGGTCAACCTGCACCTGCCGGGGATC
CGGGTCAAGCCGCTGCCGGTGGCGCCGCGGCAGATCCCGTTCCACTCCAACAAGACCTATTTCATTCTCGAA
CCCAACGCCGAGGATATGACCCAGCTGGAGCGCTCCGGCGGTTTCGCGTTCCACGTATCCGGCGAGTTCTCC
GAGCTTGAACTGAAATTCTGGGCCATCAGGAACTGA

Translation:

MNVHKIVWQEGMLLRPQHLQHNDRYYDNQMKARTQLLGSYNWGFLALELDRQFLNMGKLVISQASGVLPDGS
LFELGGNTEPLALDVPPNTSNVPIYLALPLVTGNHIEARRPEQAEVLARYTAYDLEVADSNAGEDSMVQVSC
ARPDFRLLLGEQQSDQAYVKLKVAVVLDTTPDGVISLDPDFVPSYLHAHASAYLLSCLKEVISMLGHRGDTI
AERIRSNGKVGGAEVGDFMMLQLINRTELLLRHYLGLEQVHPEQLYRVLLTMLGDLATFGSESKRPRLDSRY
QHSDQGASFRRLMEAIRQVLSMVLEQHAIELPLQARQYGILVSPLHDHKLLGSASFVLAASANCESEELRQR
LPAHLKVGAVEHIRQLVNLHLPGIRVKPLPVAPRQIPFHSNKTYFILEPNAEDMTQLERSGGFAFHVSGEFS
ELELKFWAIRN*

AnnotationID:1162 GeneID:1153

AnnotatorUID: diggins

Modification Date/Time: 2005-02-27 18:06:54

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA1667

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2309

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19451

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37182

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1153_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1153

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2057 PA1667_tr translation of PA1667 443 99.54 99.77 0 2268.0

69101 gb|AAG05056.1|AE004594_8 (AE004594) hypothetical protein PA1667 [Pseudomonas aeruginosa PAO1] 443 99.54 99.77 0 2268.0

69102 gb|AAO58842.1| (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 443 87.13 93.90 0 2033.0

69103 gb|AAO56057.1| (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 443 63.65 80.36 11 1511.0

69104 gb|AAG03469.1|AE004447_2 (AE004447) hypothetical protein PA0079 [Pseudomonas aeruginosa PAO1] 454 41.40 57.26 21 856.0

GC ORFID: `44155`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1667`	Glimmer Score:
Start: `1135949`	Stop: `1137280`
Length: `1332`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1667 translation of PA1667`	Homolog Bit Score `878.0`
Other Homologs: `t_PA0079 (ORF: BLASTX 331.0), t_PA1667 (ORF: GLIMMER)`
GC ORF Sequence
ATGAACGTGCACAAGATCGTCTGGCAGGAAGGCATGCTGCTGCGCCCGCAGCATCTGCAACACAACGACCGC TACTACGACAACCAGATGAAGGCCCGGACCCAGTTGCTGGGCAGCTACAACTGGGGCTTCCTCGCCCTGGAG CTGGACCGCCAGTTCCTCAACATGGGCAAGCTGGTGATCAGCCAGGCCTCCGGCGTACTGCCCGACGGCAGC CTGTTCGAACTCGGCGGCAACACCGAGCCGCTCGCCCTCGACGTGCCGCCCAATACCTCGAACGTGCCGATC TACCTGGCCCTGCCGCTGGTCACCGGTAACCACATCGAGGCGCGCCGGCCGGAGCAGGCCGAGGTCCTGGCG CGCTATACCGCCTACGATCTGGAGGTGGCGGACTCCAACGCCGGCGAGGATTCCATGGTGCAGGTCAGCTGC GCGCGGCCGGATTTTCGCCTGCTGCTCGGCGAGCAGCAGAGCGACCAGGCCTACGTCAAACTGAAGGTGGCG GTGGTGCTGGATACCACGCCGGACGGGGTGATCAGCCTCGACCCCGACTTCGTGCCGAGCTACCTCCACGCC CACGCATCCGCCTACCTGCTGTCCTGCCTGAAGGAGGTGATCAGCATGCTCGGCCATCGCGGCGACACCATC GCCGAGCGTATCCGGTCCAATGGCAAGGTCGGCGGCGCGGAGGTCGGCGATTTCATGATGCTGCAACTGATC AATCGCACCGAGTTGCTGCTGCGCCACTACCTGGGATTGGAGCAGGTGCATCCGGAGCAGTTGTACCGGGTG CTGCTGACCATGCTCGGCGACCTCGCCACCTTCGGCAGCGAGAGCAAGCGTCCGCGCCTGGACAGCCGTTAC CAGCACAGCGACCAGGGCGCCAGCTTCCGCAGGCTGATGGAGGCGATTCGCCAGGTCCTGTCGATGGTGCTC GAGCAGCATGCCATCGAACTGCCTCTCCAGGCCCGCCAGTACGGCATCCTGGTCTCGCCCCTGCACGACCAC AAGCTGCTCGGCAGCGCCTCGTTCGTGCTCGCCGCCAGTGCCAATTGCGAGTCGGAGGAACTGCGCCAGCGC CTGCCCGCGCATCTCAAGGTGGGTGCGGTCGAGCACATTCGCCAGTTGGTCAACCTGCACCTGCCGGGGATC CGGGTCAAGCCGCTGCCGGTGGCGCCGCGGCAGATCCCGTTCCACTCCAACAAGACCTATTTCATTCTCGAA CCCAACGCCGAGGATATGACCCAGCTGGAGCGCTCCGGCGGTTTCGCGTTCCACGTATCCGGCGAGTTCTCC GAGCTTGAACTGAAATTCTGGGCCATCAGGAACTGA