ViewGene
Locus Name:
GeneID:
Location:

GeneID:1152
TrivialName: PA14_52880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52880
PAO1 Ortholog Locus:PA0881
Sequence Length:1353
Protein Length:450
Start: 4688627
Stop: 4687275
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04270.1|AE004522_12 (AE004522) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 447/450 (99%), Positives = 447/450 (99%)
Sequence:
ATGACCGACTACACCCAGCAACTCGCCGGCTTTCTCGCCGGCCTGCGCTACCAGGACCTGCCGCCGGCGGTG
CTGGCGCGGATGGAAGAATTGTTCCTCGACTGGCTCGGCTCGGCGCTGGCCGGCAAGGGCCAGCATCCGATC
CCATTGTTCGAGCGCTACGCCGAACGCATGGGCCCGGCCGACGGTAGCGCGCAGATCCTGCCCAGCCGGCGG
CGCAGCTCGCCGTATTTCGCCGCCCTGGTGAACGGCGCGGCTTCCCACGTGGTGGAGCAGGACGACCTGCAC
AACAGCTCGGTGCTGCACCCCGCGGCAGTGGTCTTCCCTGCCGCCCTGGCCGCGGCCCAGGACCTCGGCCGC
AGTGGCGCCGAGCTGATCCTCGCGGCGGTGGCCGGCTACGAGGCCGGCATCCGCATCGGCGAATTCCTCGGT
CGTTCCCACTACCGGGTGTTCCATACCACTGCCACGGTCGGCACCCTCGCCGCGGCAGTGGCGGTGGGCAAG
CTGATGGACTTCGACCGCGAGCGCTTCGTCGACCTGCTCGGCAGCGCCGGAACCCAGGCCGCCGGGCTCTGG
GAGTTCCTCCGCGACGCCGCCGATTCCAAGCAGTTGCATACCGCCAAGGCCGCCGCCGACGGGCTGCTCGCC
GCCTATCTCACCGCCGACGGCCTGAGCGGCGCGCGACACATCCTCGAAGGCGAGCAAGGGATGGCCGCCGGG
ATGTCCAGCGACGCCGACCCCGAGCGCCTGGTGGATCGCCTCGGCAGCCGCTGGGCGTTGCTGGAAACCTCG
TTCAAGTTCCACGCCTCGTGCCGCCATACCCATCCCGCGGCCGACGCGCTGCTGGCGCTGATGCAGCGCGAA
GGGCTCGATCACTCGCAGATCGCCGCGGTCACTGCGCGGGTCCACCAGGGCGCCATCGACGTGCTCGGCCGG
GTGGTCGAGCCGCAGACCGTGCACCAGGCGAAGTTCTCCATGGGCACCGTGCTGGGCCTGATCGCCGTGTAC
GGCAAGGCCGGCCTCGGCGAGTTCCATCGGCATGCGCTGAGCGACCCACGGGTCGCTGCGTTCCGCGAGCGG
GTCGAGATGCGCCTGGACCCGGAGGTCGACGCCGCCTATCCGCAGCGCTGGCTCGGGCGGGTCGAAGTACTG
GATGGCGAAGGGCGGCGCCATACCGCCGCCATCGACGAACCCAAGGGCGATCCCGGCAATACCCTCAGCCGC
GACGAGCTGGCCGACAAGTTCCGCCGCCTGCTGGCGTTTTCCGGCGCGGCCACCGGCGCCGAGGCGGAGATC
CTTATCCAGCGGGCCTGGGGCCTGCGTCAGGCGCCTTCCGTAACGCCCCTGATCTGA
Translation:
MTDYTQQLAGFLAGLRYQDLPPAVLARMEELFLDWLGSALAGKGQHPIPLFERYAERMGPADGSAQILPSRR
RSSPYFAALVNGAASHVVEQDDLHNSSVLHPAAVVFPAALAAAQDLGRSGAELILAAVAGYEAGIRIGEFLG
RSHYRVFHTTATVGTLAAAVAVGKLMDFDRERFVDLLGSAGTQAAGLWEFLRDAADSKQLHTAKAAADGLLA
AYLTADGLSGARHILEGEQGMAAGMSSDADPERLVDRLGSRWALLETSFKFHASCRHTHPAADALLALMQRE
GLDHSQIAAVTARVHQGAIDVLGRVVEPQTVHQAKFSMGTVLGLIAVYGKAGLGEFHRHALSDPRVAAFRER
VEMRLDPEVDAAYPQRWLGRVEVLDGEGRRHTAAIDEPKGDPGNTLSRDELADKFRRLLAFSGAATGAEAEI
LIQRAWGLRQAPSVTPLI*
AnnotationID:1161GeneID:1152
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 14:02:29
Gene Name:
Confidence Code:3
GeneProduct:putative protein involved in propionate catabolism
Cell Localization:()
Synonyms:PA0881
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03972, COG2079
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03972, MmgE_PrpD, MmgE/PrpD family. Score: 396, 5e-111
COG2079, PrpD, Uncharacterized protein involved in propionate catabolism. Score: 342, 9e-95






   
Genomic Context:






   
Comment:


















    ReferenceID:2307




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19449




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1152
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2056
                           PA0881_tr
                           translation of PA0881
                           450
                           99.33
                           99.33
                           0
                           2268.0
     

     
     
69097
                           gb|AAG04270.1|AE004522_12
                           (AE004522) hypothetical protein PA0881 [Pseudomonas aeruginosa PAO1]
                           450
                           99.33
                           99.33
                           0
                           2268.0
     

     
     
69098
                           emb|CAE33452.1|
                           (BX640446) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           459
                           62.96
                           73.20
                           10
                           1430.0
     

     
     
69099
                           emb|CAE38284.1|
                           (BX640432) conserved hypothetical protein [Bordetella parapertussis]
                           459
                           62.74
                           72.98
                           10
                           1423.0
     

     
     
69100
                           emb|CAE41878.1|
                           (BX640415) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           459
                           62.30
                           72.54
                           10
                           1410.0
     

     






      

          
GC ORFID: 44154How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0881Glimmer Score: 

          
Start: 265280Stop: 266632

          
Length: 1353


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0881 translation of PA0881Homolog Bit Score 878.0

          
Other Homologs:  t_PA0881 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGACTACACCCAGCAACTCGCCGGCTTTCTCGCCGGCCTGCGCTACCAGGACCTGCCGCCGGCGGTG 
CTGGCGCGGATGGAAGAATTGTTCCTCGACTGGCTCGGCTCGGCGCTGGCCGGCAAGGGCCAGCATCCGATC 
CCATTGTTCGAGCGCTACGCCGAACGCATGGGCCCGGCCGACGGTAGCGCGCAGATCCTGCCCAGCCGGCGG 
CGCAGCTCGCCGTATTTCGCCGCCCTGGTGAACGGCGCGGCTTCCCACGTGGTGGAGCAGGACGACCTGCAC 
AACAGCTCGGTGCTGCACCCCGCGGCAGTGGTCTTCCCTGCCGCCCTGGCCGCGGCCCAGGACCTCGGCCGC 
AGTGGCGCCGAGCTGATCCTCGCGGCGGTGGCCGGCTACGAGGCCGGCATCCGCATCGGCGAATTCCTCGGT 
CGTTCCCACTACCGGGTGTTCCATACCACTGCCACGGTCGGCACCCTCGCCGCGGCAGTGGCGGTGGGCAAG 
CTGATGGACTTCGACCGCGAGCGCTTCGTCGACCTGCTCGGCAGCGCCGGAACCCAGGCCGCCGGGCTCTGG 
GAGTTCCTCCGCGACGCCGCCGATTCCAAGCAGTTGCATACCGCCAAGGCCGCCGCCGACGGGCTGCTCGCC 
GCCTATCTCACCGCCGACGGCCTGAGCGGCGCGCGACACATCCTCGAAGGCGAGCAAGGGATGGCCGCCGGG 
ATGTCCAGCGACGCCGACCCCGAGCGCCTGGTGGATCGCCTCGGCAGCCGCTGGGCGTTGCTGGAAACCTCG 
TTCAAGTTCCACGCCTCGTGCCGCCATACCCATCCCGCGGCCGACGCGCTGCTGGCGCTGATGCAGCGCGAA 
GGGCTCGATCACTCGCAGATCGCCGCGGTCACTGCGCGGGTCCACCAGGGCGCCATCGACGTGCTCGGCCGG 
GTGGTCGAGCCGCAGACCGTGCACCAGGCGAAGTTCTCCATGGGCACCGTGCTGGGCCTGATCGCCGTGTAC 
GGCAAGGCCGGCCTCGGCGAGTTCCATCGGCATGCGCTGAGCGACCCACGGGTCGCTGCGTTCCGCGAGCGG 
GTCGAGATGCGCCTGGACCCGGAGGTCGACGCCGCCTATCCGCAGCGCTGGCTCGGGCGGGTCGAAGTACTG 
GATGGCGAAGGGCGGCGCCATACCGCCGCCATCGACGAACCCAAGGGCGATCCCGGCAATACCCTCAGCCGC 
GACGAGCTGGCCGACAAGTTCCGCCGCCTGCTGGCGTTTTCCGGCGCGGCCACCGGCGCCGAGGCGGAGATC 
CTTATCCAGCGGGCCTGGGGCCTGCGTCAGGCGCCTTCCGTAACGCCCCTGATCTGA