ViewGene
Locus Name:
GeneID:
Location:

GeneID:1151
TrivialName: PA14_03760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03760
PAO1 Ortholog Locus:PA0287
Sequence Length:1386
Protein Length:461
Start: 336327
Stop: 337712
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03676.1|AE004466_10 (AE004466) probable sodium:solute symporter [Pseudomonas aeruginosa PAO1]
Identities = 461/461 (100%), Positives = 461/461 (100%)
Sequence:
ATGTTGCTGGATTACCTGATCATGCTGGTCTACGCCCTGGCCATGCTGGGCCTGGGCTGGTACGGAATGCGC
AAGGCGAAGAGCCAGAGCGATTTCCTCGTCGCCGGACGCCGCCTCGGCCCCGGCCTCTACCTGGGAACCATG
GCCGCGGTGGTGCTCGGCGGCGCGTCGACCATCGGTACGGTCAAGCTCGGCTACCAGTTCGGCCTGTCCGGC
TTGTGGCTGGTGTTCATGCTCGGCCTGGGGATCATCGTCCTCAGCCTGGTGTTCTCGCGGCAGATCGCGCGC
CTGCGGGTGTTCACCGTGACCCAGGTGCTGGAGCAGCGCTACCAGGCCTCCTCGCGCCTGATCGGCGGGGTG
GTCATGGTCGCCTACGACCTGATGGTGGCGGTCACCGCGACCATCGCCATCGGCTCGGTCACCGAGGTGGTA
TTCGGCATCCCGCGGATCCCGGCGATCCTCTGCGGTGGCGGGATCGTCATCGTCTATTCGGTGATCGGCGGC
ATGTGGTCCCTTACGCTGACCGACATCATCCAGTTCGTGATCAAGACCGTCGGTATCTTCCTGGTCCTGCTG
CCGTTGTCGATCGACGGCGCCGGTGGCCTGGCGCGCATGCAGGAGGTGCTGCCGGCGGGCTTCTTCGACCTC
GGCCACATCGGCCTGGATACCATCCTCACCTACTTCCTCCTGTACTTCTTCGGCGCGCTGATCGGCCAGGAC
ATCTGGCAGCGAGTGTTCACCGCGCGCAGCGAGACGGTGGTGCGCTATGCCGGGCTTGGTGCCGGCGTCTAC
TGCATGCTCTACGGCGCCGCCTGCGCGCTGATCGGCGCGGCGGCGCGGGTCCTCCTGCCGGACCTGGCGGTG
CCGGAGAACGCCTACGCCGAGATCACCCGCGAGGTACTGGCGCCGGGCCTGCGCGGCCTGGTGGTGGCGGCC
GCGCTGTCGGCGATCATGTCCACCGCCAGCGGGTGCCTGCTGGCGGCGGCCACCGTGCTGCAGGAAGACATC
TATGCGCGCTTCCTGCGCCCCGGTACCACCAGCGACATCCGCCTGAGCCGTTGCATCACCCTGCTGATGGGG
GTGGCGATGCTGGTCCTGGCGTGCCTGGTCAACGACGTCATCGCGGCCCTGAGCATCGCCTACAACCTGCTG
GTCGGCGGCCTGCTGGTGCCGATCGTCGGCGCGCTGCTGTGGCGTCGGGCCAGTCCGCAGGGAGCGATCGCC
AGCATCGTCGCCGGTTGCCTGGCGGTGATCGCCTGCATGGCCCGCGACGGCCTGCTCGCCAACTCGCCGATC
GTCTACGGCCTGCTGGCCAGCCTGGCGACCTTCGTCGCGGTCAGCCTGGCCACCCGTCCTGCCGCCAGCCTG
CGAGCCCAGCCGGAATGA
Translation:
MLLDYLIMLVYALAMLGLGWYGMRKAKSQSDFLVAGRRLGPGLYLGTMAAVVLGGASTIGTVKLGYQFGLSG
LWLVFMLGLGIIVLSLVFSRQIARLRVFTVTQVLEQRYQASSRLIGGVVMVAYDLMVAVTATIAIGSVTEVV
FGIPRIPAILCGGGIVIVYSVIGGMWSLTLTDIIQFVIKTVGIFLVLLPLSIDGAGGLARMQEVLPAGFFDL
GHIGLDTILTYFLLYFFGALIGQDIWQRVFTARSETVVRYAGLGAGVYCMLYGAACALIGAAARVLLPDLAV
PENAYAEITREVLAPGLRGLVVAAALSAIMSTASGCLLAAATVLQEDIYARFLRPGTTSDIRLSRCITLLMG
VAMLVLACLVNDVIAALSIAYNLLVGGLLVPIVGALLWRRASPQGAIASIVAGCLAVIACMARDGLLANSPI
VYGLLASLATFVAVSLATRPAASLRAQPE*
AnnotationID:1160GeneID:1151
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 06:06:04
Gene Name:
Confidence Code:3
GeneProduct:putative sodium:solute symporter
Cell Localization:()
Synonyms:PA0287
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0591,COG4145,pfam00474
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70098.1|AE016649_6 (AE016791) sodium-solute symporter, putative [Pseudomonas putida
           KT2440]
          Length = 459

 Score =  513 bits (1320), Expect = e-144
 Identities = 257/455 (56%), Positives = 337/455 (74%), Gaps = 1/455 (0%)

>dbj|BAC72996.1| (AP005042) putative sodium:solute symporter [Streptomyces
           avermitilis MA-4680]
          Length = 486

 Score =  506 bits (1302), Expect = e-142
 Identities = 256/455 (56%), Positives = 345/455 (75%), Gaps = 5/455 (1%)






 
Structural Features:
COG0591, PutP, Na+/proline symporter 
[Amino acid transport and metabolism]
CD-Length = 493 residues,  98.6% aligned
Score =  194 bits (495), Expect = 1e-50
Identities = 143/486 (29%), Positives = 232/486 (47%), Gaps = 25/486 (5%)

COG4145, PanF, Na+/panthothenate symporter 
[Coenzyme metabolism]
CD-Length = 473 residues,  98.7% aligned
Score =  128 bits (324), Expect = 1e-30
Identities = 110/470 (23%), Positives = 201/470 (42%), Gaps = 24/470 (5%)

pfam00474, SSF, Sodium:solute symporter family. 
CD-Length = 406 residues, 100.0% aligned
Score =  116 bits (291), Expect = 7e-27
Identities = 95/410 (23%), Positives = 175/410 (42%), Gaps = 32/410 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2305




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19447




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33638




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1151_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1151
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2054
                           PA0287_tr
                           translation of PA0287
                           461
                           99.99
                           99.99
                           0
                           2271.0
     

     
     
69093
                           gb|AAG03676.1|AE004466_10
                           (AE004466) probable sodium:solute symporter [Pseudomonas aeruginosa PAO1]
                           461
                           99.99
                           99.99
                           0
                           2271.0
     

     
     
69095
                           gb|AAN70098.1|AE016649_6
                           (AE016791) sodium-solute symporter, putative [Pseudomonas putida KT2440]
                           462
                           55.84
                           73.59
                           4
                           1317.0
     

     
     
2055
                           PA1418_tr
                           translation of PA1418
                           466
                           55.79
                           73.60
                           8
                           1320.0
     

     
     
69094
                           gb|AAG04807.1|AE004571_6
                           (AE004571) probable sodium:solute symport protein [Pseudomonas aeruginosa PAO1]
                           466
                           55.79
                           73.60
                           8
                           1320.0
     

     






      

          
GC ORFID: 44153How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0287Glimmer Score: 

          
Start: 6137668Stop: 6139053

          
Length: 1386


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0287 translation of PA0287Homolog Bit Score 879.0

          
Other Homologs:  t_PA1418 (ORF: BLASTX 513.0), t_PA0287 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGCTGGATTACCTGATCATGCTGGTCTACGCCCTGGCCATGCTGGGCCTGGGCTGGTACGGAATGCGC 
AAGGCGAAGAGCCAGAGCGATTTCCTCGTCGCCGGACGCCGCCTCGGCCCCGGCCTCTACCTGGGAACCATG 
GCCGCGGTGGTGCTCGGCGGCGCGTCGACCATCGGTACGGTCAAGCTCGGCTACCAGTTCGGCCTGTCCGGC 
TTGTGGCTGGTGTTCATGCTCGGCCTGGGGATCATCGTCCTCAGCCTGGTGTTCTCGCGGCAGATCGCGCGC 
CTGCGGGTGTTCACCGTGACCCAGGTGCTGGAGCAGCGCTACCAGGCCTCCTCGCGCCTGATCGGCGGGGTG 
GTCATGGTCGCCTACGACCTGATGGTGGCGGTCACCGCGACCATCGCCATCGGCTCGGTCACCGAGGTGGTA 
TTCGGCATCCCGCGGATCCCGGCGATCCTCTGCGGTGGCGGGATCGTCATCGTCTATTCGGTGATCGGCGGC 
ATGTGGTCCCTTACGCTGACCGACATCATCCAGTTCGTGATCAAGACCGTCGGTATCTTCCTGGTCCTGCTG 
CCGTTGTCGATCGACGGCGCCGGTGGCCTGGCGCGCATGCAGGAGGTGCTGCCGGCGGGCTTCTTCGACCTC 
GGCCACATCGGCCTGGATACCATCCTCACCTACTTCCTCCTGTACTTCTTCGGCGCGCTGATCGGCCAGGAC 
ATCTGGCAGCGAGTGTTCACCGCGCGCAGCGAGACGGTGGTGCGCTATGCCGGGCTTGGTGCCGGCGTCTAC 
TGCATGCTCTACGGCGCCGCCTGCGCGCTGATCGGCGCGGCGGCGCGGGTCCTCCTGCCGGACCTGGCGGTG 
CCGGAGAACGCCTACGCCGAGATCACCCGCGAGGTACTGGCGCCGGGCCTGCGCGGCCTGGTGGTGGCGGCC 
GCGCTGTCGGCGATCATGTCCACCGCCAGCGGGTGCCTGCTGGCGGCGGCCACCGTGCTGCAGGAAGACATC 
TATGCGCGCTTCCTGCGCCCCGGTACCACCAGCGACATCCGCCTGAGCCGTTGCATCACCCTGCTGATGGGG 
GTGGCGATGCTGGTCCTGGCGTGCCTGGTCAACGACGTCATCGCGGCCCTGAGCATCGCCTACAACCTGCTG 
GTCGGCGGCCTGCTGGTGCCGATCGTCGGCGCGCTGCTGTGGCGTCGGGCCAGTCCGCAGGGAGCGATCGCC 
AGCATCGTCGCCGGTTGCCTGGCGGTGATCGCCTGCATGGCCCGCGACGGCCTGCTCGCCAACTCGCCGATC 
GTCTACGGCCTGCTGGCCAGCCTGGCGACCTTCGTCGCGGTCAGCCTGGCCACCCGTCCTGCCGCCAGCCTG 
CGAGCCCAGCCGGAATGA