ViewGene

Locus Name:
GeneID:
Location:

GeneID:1150
TrivialName: PA14_70100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70100
PAO1 Ortholog Locus:PA5309
Sequence Length:1320
Protein Length:439
Start: 6251036
Stop: 6252355
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08694.1|AE004943_10 (AE004943) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 433/439 (98%), Positives = 436/439 (99%)
Sequence:
ATGAACGCCCGCGTTCACCAGCCGGTGCATACCGCCCAACACGCCCCCTCCTACTACGCCGCCACGCTCAAC
CGACGCATCGAGTGCCCTCCCCTGGCCGGCGAAGAACAGGCCGACGTGTGCGTCGTCGGCGGCGGCTTCTCG
GGAGTGAACACGGCGTTGGAACTGGCCCAGCGCGGCTTCTCCGTGGTCCTGCTGGAAGCGCACCGGATCGGC
TGGGGCGCCAGTGGGCGCAATGGCGGCCAGTTGATCCGCGGCGTCGGCCATGACGTCGAGCAGTTCCTCCCG
GTGATCGGCGCCGACGGCGTGAAGGCACTCAAGCTGATGGGCCTGGAGGCGGTGGAGATCGTCCGTCGCCGG
GTCGAGCAATACGCCATCGACTGCGATCTGCGCTGGGGCTACTGCGACCTGGCGAACAAGCCCGGCGACTAC
CAGGGCTTCCGCGAGGACATGGAGGAACTCCAGGCCCTCGGCTATCGCCACGAGATGCGCCTGGTGCCGGCC
GCGGAGATGCGCAGCGTGGTCGGCTCCGATCGCTACGTCGGCGGCCTGGTGGACATGGGCTCCGGCCACCTG
CACCCGCTCAACCTGGTCCTCGGCGAAGCCGCCGCTGCCCAGTCGCTGGGCGTCCGCCTGTTCGAGCGCTCG
CCGGTGACGCGCATCGACTACGGCACGGAAGTCCAGGTGCATACCGCCGCCGGCAAGGTGCGGGCGAAGACC
CTGGTGCTGGGCTGCAACGCCTACATGAACGACCTCAACCCGCTGCTCGGCGGCAAGGTACTGCCGGCCGGC
AGCTACGTGATCGCCACCGAACCGCTGGACGAGCAACTGGCCCGCCAACTGCTGCCGCAGAACATGGCAGTG
TGCGACCAGCGCGTGGCCCTCGACTACTACCGGCTCTCCGCCGACAACCGCCTGCTGTTCGGTGGCGCCTGC
CATTATTCCGGCCGCGACCCCAGCGACATCGCCGCCTACATGCGGCCGAAGATGCTGGAGGTATTCCCGCAA
CTGGCGAACGTCCGCATCGACTACCAATGGGGCGGCATGATCGGCATCGGTGCCAATCGCCTGCCACAGATC
GGCCGCCTGCCGGGGCAGCCCAACGTGTACTTCGCCCAGGCCTATTCCGGACACGGGGTGAACGCCACGCAC
CTCGCCGGGCAGTTGCTCGCCGAAGCCATCGGCGGCCAGCAGAGCGACGGCTTCGACCTGTTCGCCAAGGTG
CCGCACATCACCTTCCCCGGCGGCAAGCTGCTGCGCTCGCCACTGCTGGCGCTGGGCATGGCCTGGTACCGG
CTGAAGGAAAAACTCGGTAGCTGA
Translation:
MNARVHQPVHTAQHAPSYYAATLNRRIECPPLAGEEQADVCVVGGGFSGVNTALELAQRGFSVVLLEAHRIG
WGASGRNGGQLIRGVGHDVEQFLPVIGADGVKALKLMGLEAVEIVRRRVEQYAIDCDLRWGYCDLANKPGDY
QGFREDMEELQALGYRHEMRLVPAAEMRSVVGSDRYVGGLVDMGSGHLHPLNLVLGEAAAAQSLGVRLFERS
PVTRIDYGTEVQVHTAAGKVRAKTLVLGCNAYMNDLNPLLGGKVLPAGSYVIATEPLDEQLARQLLPQNMAV
CDQRVALDYYRLSADNRLLFGGACHYSGRDPSDIAAYMRPKMLEVFPQLANVRIDYQWGGMIGIGANRLPQI
GRLPGQPNVYFAQAYSGHGVNATHLAGQLLAEAIGGQQSDGFDLFAKVPHITFPGGKLLRSPLLALGMAWYR
LKEKLGS*
AnnotationID:1159GeneID:1150
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 13:01:59
Gene Name:
Confidence Code:3
GeneProduct:putative Glycine/D-amino acid oxidase
Cell Localization:()
Synonyms:PA5309
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70838.1|AE016728_7 (AE016793) oxidoreductase, putative [Pseudomonas putida KT2440]
          Length = 430

 Score =  681 bits (1758), Expect = 0.0
 Identities = 332/427 (77%), Positives = 373/427 (87%)

>gb|AAC45300.1| (U38543) oxidoreductase [Escherichia coli]
          Length = 426

 Score =  373 bits (957), Expect = e-102
 Identities = 197/427 (46%), Positives = 267/427 (62%), Gaps = 5/427 (1%)
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues, 100.0% aligned
Score =  214 bits (544), Expect = 2e-56
Identities = 119/398 (29%), Positives = 164/398 (41%), Gaps = 23/398 (5%)
Genomic Context:
Comment:
ReferenceID:2303
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19445
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34792
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1150_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1150

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2050 PA5309_tr translation of PA5309 439 98.63 99.31 0 2271.0
69056 gb|AAG08694.1|AE004943_10 (AE004943) probable oxidoreductase [Pseudomonas aeruginosa PAO1] 439 98.63 99.31 0 2271.0
69058 gb|AAN70838.1|AE016728_7 (AE016793) oxidoreductase, putative [Pseudomonas putida KT2440] 439 75.62 84.96 9 1753.0
69057 gb|AAO53652.1| (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 439 74.94 85.87 2 1755.0
69059 gb|AAN68754.1|AE016507_5 (AE016785) oxidoreductase, putative [Pseudomonas putida KT2440] 439 65.83 77.44 8 1553.0
GC ORFID: 44152How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5309Glimmer Score:
Start: 5514725Stop: 5516044
Length: 1320
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5309 translation of PA5309Homolog Bit Score 879.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3925 (ORF: BLASTX 686.0), t_PA2776 (ORF: BLASTX 395.0), t_PA1565 (ORF: BLASTX 343.0), t_PA2317 (ORF: BLASTX 338.0), psyr_15may02_Scaffold1_revised_gene140 (ORF: BLASTX 178.0), t_PA5309 (ORF: GLIMMER)
GC ORF Sequence
ATGAACGCCCGCGTTCACCAGCCGGTGCATACCGCCCAACACGCCCCCTCCTACTACGCCGCCACGCTCAAC
CGACGCATCGAGTGCCCTCCCCTGGCCGGCGAAGAACAGGCCGACGTGTGCGTCGTCGGCGGCGGCTTCTCG
GGAGTGAACACGGCGTTGGAACTGGCCCAGCGCGGCTTCTCCGTGGTCCTGCTGGAAGCGCACCGGATCGGC
TGGGGCGCCAGTGGGCGCAATGGCGGCCAGTTGATCCGCGGCGTCGGCCATGACGTCGAGCAGTTCCTCCCG
GTGATCGGCGCCGACGGCGTGAAGGCACTCAAGCTGATGGGCCTGGAGGCGGTGGAGATCGTCCGTCGCCGG
GTCGAGCAATACGCCATCGACTGCGATCTGCGCTGGGGCTACTGCGACCTGGCGAACAAGCCCGGCGACTAC
CAGGGCTTCCGCGAGGACATGGAGGAACTCCAGGCCCTCGGCTATCGCCACGAGATGCGCCTGGTGCCGGCC
GCGGAGATGCGCAGCGTGGTCGGCTCCGATCGCTACGTCGGCGGCCTGGTGGACATGGGCTCCGGCCACCTG
CACCCGCTCAACCTGGTCCTCGGCGAAGCCGCCGCTGCCCAGTCGCTGGGCGTCCGCCTGTTCGAGCGCTCG
CCGGTGACGCGCATCGACTACGGCACGGAAGTCCAGGTGCATACCGCCGCCGGCAAGGTGCGGGCGAAGACC
CTGGTGCTGGGCTGCAACGCCTACATGAACGACCTCAACCCGCTGCTCGGCGGCAAGGTACTGCCGGCCGGC
AGCTACGTGATCGCCACCGAACCGCTGGACGAGCAACTGGCCCGCCAACTGCTGCCGCAGAACATGGCAGTG
TGCGACCAGCGCGTGGCCCTCGACTACTACCGGCTCTCCGCCGACAACCGCCTGCTGTTCGGTGGCGCCTGC
CATTATTCCGGCCGCGACCCCAGCGACATCGCCGCCTACATGCGGCCGAAGATGCTGGAGGTATTCCCGCAA
CTGGCGAACGTCCGCATCGACTACCAATGGGGCGGCATGATCGGCATCGGTGCCAATCGCCTGCCACAGATC
GGCCGCCTGCCGGGGCAGCCCAACGTGTACTTCGCCCAGGCCTATTCCGGACACGGGGTGAACGCCACGCAC
CTCGCCGGGCAGTTGCTCGCCGAAGCCATCGGCGGCCAGCAGAGCGACGGCTTCGACCTGTTCGCCAAGGTG
CCGCACATCACCTTCCCCGGCGGCAAGCTGCTGCGCTCGCCACTGCTGGCGCTGGGCATGGCCTGGTACCGG
CTGAAGGAAAAACTCGGTAGCTGA