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ViewGene |
Locus Name:
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GeneID: |
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Location: |
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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG08694.1|AE004943_10 (AE004943) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 433/439 (98%), Positives = 436/439 (99%)
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Sequence:
ATGAACGCCCGCGTTCACCAGCCGGTGCATACCGCCCAACACGCCCCCTCCTACTACGCCGCCACGCTCAAC
CGACGCATCGAGTGCCCTCCCCTGGCCGGCGAAGAACAGGCCGACGTGTGCGTCGTCGGCGGCGGCTTCTCG
GGAGTGAACACGGCGTTGGAACTGGCCCAGCGCGGCTTCTCCGTGGTCCTGCTGGAAGCGCACCGGATCGGC
TGGGGCGCCAGTGGGCGCAATGGCGGCCAGTTGATCCGCGGCGTCGGCCATGACGTCGAGCAGTTCCTCCCG
GTGATCGGCGCCGACGGCGTGAAGGCACTCAAGCTGATGGGCCTGGAGGCGGTGGAGATCGTCCGTCGCCGG
GTCGAGCAATACGCCATCGACTGCGATCTGCGCTGGGGCTACTGCGACCTGGCGAACAAGCCCGGCGACTAC
CAGGGCTTCCGCGAGGACATGGAGGAACTCCAGGCCCTCGGCTATCGCCACGAGATGCGCCTGGTGCCGGCC
GCGGAGATGCGCAGCGTGGTCGGCTCCGATCGCTACGTCGGCGGCCTGGTGGACATGGGCTCCGGCCACCTG
CACCCGCTCAACCTGGTCCTCGGCGAAGCCGCCGCTGCCCAGTCGCTGGGCGTCCGCCTGTTCGAGCGCTCG
CCGGTGACGCGCATCGACTACGGCACGGAAGTCCAGGTGCATACCGCCGCCGGCAAGGTGCGGGCGAAGACC
CTGGTGCTGGGCTGCAACGCCTACATGAACGACCTCAACCCGCTGCTCGGCGGCAAGGTACTGCCGGCCGGC
AGCTACGTGATCGCCACCGAACCGCTGGACGAGCAACTGGCCCGCCAACTGCTGCCGCAGAACATGGCAGTG
TGCGACCAGCGCGTGGCCCTCGACTACTACCGGCTCTCCGCCGACAACCGCCTGCTGTTCGGTGGCGCCTGC
CATTATTCCGGCCGCGACCCCAGCGACATCGCCGCCTACATGCGGCCGAAGATGCTGGAGGTATTCCCGCAA
CTGGCGAACGTCCGCATCGACTACCAATGGGGCGGCATGATCGGCATCGGTGCCAATCGCCTGCCACAGATC
GGCCGCCTGCCGGGGCAGCCCAACGTGTACTTCGCCCAGGCCTATTCCGGACACGGGGTGAACGCCACGCAC
CTCGCCGGGCAGTTGCTCGCCGAAGCCATCGGCGGCCAGCAGAGCGACGGCTTCGACCTGTTCGCCAAGGTG
CCGCACATCACCTTCCCCGGCGGCAAGCTGCTGCGCTCGCCACTGCTGGCGCTGGGCATGGCCTGGTACCGG
CTGAAGGAAAAACTCGGTAGCTGA |
Translation:
MNARVHQPVHTAQHAPSYYAATLNRRIECPPLAGEEQADVCVVGGGFSGVNTALELAQRGFSVVLLEAHRIG
WGASGRNGGQLIRGVGHDVEQFLPVIGADGVKALKLMGLEAVEIVRRRVEQYAIDCDLRWGYCDLANKPGDY
QGFREDMEELQALGYRHEMRLVPAAEMRSVVGSDRYVGGLVDMGSGHLHPLNLVLGEAAAAQSLGVRLFERS
PVTRIDYGTEVQVHTAAGKVRAKTLVLGCNAYMNDLNPLLGGKVLPAGSYVIATEPLDEQLARQLLPQNMAV
CDQRVALDYYRLSADNRLLFGGACHYSGRDPSDIAAYMRPKMLEVFPQLANVRIDYQWGGMIGIGANRLPQI
GRLPGQPNVYFAQAYSGHGVNATHLAGQLLAEAIGGQQSDGFDLFAKVPHITFPGGKLLRSPLLALGMAWYR
LKEKLGS* |
AnnotationID:1159 | GeneID:1150 |
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Modification Date/Time: |
2005-03-16 13:01:59 |
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GeneProduct: | putative Glycine/D-amino acid oxidase |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (2) Amino acid biosynthesis and metabolism |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN70838.1|AE016728_7 (AE016793) oxidoreductase, putative [Pseudomonas putida KT2440]
Length = 430
Score = 681 bits (1758), Expect = 0.0
Identities = 332/427 (77%), Positives = 373/427 (87%)
>gb|AAC45300.1| (U38543) oxidoreductase [Escherichia coli]
Length = 426
Score = 373 bits (957), Expect = e-102
Identities = 197/427 (46%), Positives = 267/427 (62%), Gaps = 5/427 (1%) |
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Structural Features: | COG0665, DadA, Glycine/D-amino acid oxidases (deaminating)
[Amino acid transport and metabolism]
CD-Length = 387 residues, 100.0% aligned
Score = 214 bits (544), Expect = 2e-56
Identities = 119/398 (29%), Positives = 164/398 (41%), Gaps = 23/398 (5%) |
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Homologs By Global Alignment |
Gene ID:1150 |
Identity: |
0% |
10% |
20% |
30% |
40% |
50% |
60% |
70% |
80% |
90% |
100% |
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HomologID |
Accession |
Description |
Length |
PctIdentity |
PctSimilarity |
Gaps |
Score |
2050 |
PA5309_tr |
translation of PA5309 |
439 |
98.63 |
99.31 |
0 |
2271.0 |
69056 |
gb|AAG08694.1|AE004943_10 |
(AE004943) probable oxidoreductase [Pseudomonas aeruginosa PAO1] |
439 |
98.63 |
99.31 |
0 |
2271.0 |
69058 |
gb|AAN70838.1|AE016728_7 |
(AE016793) oxidoreductase, putative [Pseudomonas putida KT2440] |
439 |
75.62 |
84.96 |
9 |
1753.0 |
69057 |
gb|AAO53652.1| |
(AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] |
439 |
74.94 |
85.87 |
2 |
1755.0 |
69059 |
gb|AAN68754.1|AE016507_5 |
(AE016785) oxidoreductase, putative [Pseudomonas putida KT2440] |
439 |
65.83 |
77.44 |
8 |
1553.0 |
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GC ORFID: 44152 | How Found: BLASTX |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: t_PA5309 | Glimmer Score: |
Start: 5514725 | Stop: 5516044 |
Length: 1320 | |
Start Codon: ATG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: t_PA5309 translation of PA5309 | Homolog Bit Score 879.0 |
Other Homologs: psyr_15may02_Scaffold2_revised_gene3925 (ORF: BLASTX 686.0), t_PA2776 (ORF: BLASTX 395.0), t_PA1565 (ORF: BLASTX 343.0), t_PA2317 (ORF: BLASTX 338.0), psyr_15may02_Scaffold1_revised_gene140 (ORF: BLASTX 178.0), t_PA5309 (ORF: GLIMMER) |
GC ORF Sequence |
ATGAACGCCCGCGTTCACCAGCCGGTGCATACCGCCCAACACGCCCCCTCCTACTACGCCGCCACGCTCAAC CGACGCATCGAGTGCCCTCCCCTGGCCGGCGAAGAACAGGCCGACGTGTGCGTCGTCGGCGGCGGCTTCTCG GGAGTGAACACGGCGTTGGAACTGGCCCAGCGCGGCTTCTCCGTGGTCCTGCTGGAAGCGCACCGGATCGGC TGGGGCGCCAGTGGGCGCAATGGCGGCCAGTTGATCCGCGGCGTCGGCCATGACGTCGAGCAGTTCCTCCCG GTGATCGGCGCCGACGGCGTGAAGGCACTCAAGCTGATGGGCCTGGAGGCGGTGGAGATCGTCCGTCGCCGG GTCGAGCAATACGCCATCGACTGCGATCTGCGCTGGGGCTACTGCGACCTGGCGAACAAGCCCGGCGACTAC CAGGGCTTCCGCGAGGACATGGAGGAACTCCAGGCCCTCGGCTATCGCCACGAGATGCGCCTGGTGCCGGCC GCGGAGATGCGCAGCGTGGTCGGCTCCGATCGCTACGTCGGCGGCCTGGTGGACATGGGCTCCGGCCACCTG CACCCGCTCAACCTGGTCCTCGGCGAAGCCGCCGCTGCCCAGTCGCTGGGCGTCCGCCTGTTCGAGCGCTCG CCGGTGACGCGCATCGACTACGGCACGGAAGTCCAGGTGCATACCGCCGCCGGCAAGGTGCGGGCGAAGACC CTGGTGCTGGGCTGCAACGCCTACATGAACGACCTCAACCCGCTGCTCGGCGGCAAGGTACTGCCGGCCGGC AGCTACGTGATCGCCACCGAACCGCTGGACGAGCAACTGGCCCGCCAACTGCTGCCGCAGAACATGGCAGTG TGCGACCAGCGCGTGGCCCTCGACTACTACCGGCTCTCCGCCGACAACCGCCTGCTGTTCGGTGGCGCCTGC CATTATTCCGGCCGCGACCCCAGCGACATCGCCGCCTACATGCGGCCGAAGATGCTGGAGGTATTCCCGCAA CTGGCGAACGTCCGCATCGACTACCAATGGGGCGGCATGATCGGCATCGGTGCCAATCGCCTGCCACAGATC GGCCGCCTGCCGGGGCAGCCCAACGTGTACTTCGCCCAGGCCTATTCCGGACACGGGGTGAACGCCACGCAC CTCGCCGGGCAGTTGCTCGCCGAAGCCATCGGCGGCCAGCAGAGCGACGGCTTCGACCTGTTCGCCAAGGTG CCGCACATCACCTTCCCCGGCGGCAAGCTGCTGCGCTCGCCACTGCTGGCGCTGGGCATGGCCTGGTACCGG CTGAAGGAAAAACTCGGTAGCTGA |
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