ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1149

TrivialName: PA14_24510

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_24510

PAO1 Ortholog Locus: PA3061

Sequence Length: 1368

Protein Length: 455

Start: 2142437

Stop: 2143804

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06449.1|AE004730_13 (AE004730) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 450/455 (98%), Positives = 453/455 (99%)

Sequence:

ATGTCCGCGCACAAGGATTTCACCCTCGCACCGCGCGCCAGCGGCAGTGTCTCCTGGGTCGAGACGCTGGTC
ATCAGCGCGCTCGCGCTGGGCCTGGGCTGGTGGTTCAGCCCGGACGACCCGCTGCAGGTCAACGCCACCTTT
CCCTGGGTGATCCTCGCGCCCCTGTTGCTGGGCATGCGCTACGGCTTCGTCCGCGGGTTGGCCAGCGCGGCG
CTGCTGGTGGCGGCGCTGTTCGCGTTTCGCGTCCAGGGCGTCGAGGCCTATGCCCAGGTACCGGCGGCCTTC
ATCGTCGGCGTGCTGCTCTGCGCCATGTTGGTGGGCGAGTTCCGCGACATCTGGGAACGCCGCCTGGAGCGC
CTGGAGCTGGCGAACGAGTACCGCCAGTTGCGCCTCGACGAATTCACCCGCGCCCATCACATCCTGCGCATC
TCCCACGATCGCCTGGAGCAGCGGGTCGCCGGCAACGACCAGAGCCTGCGCAGTTCGCTGCTCGGTCTGCGA
CAACTGCTGCGCGAGCTGCCGGGCGATGAGGCACCGCTCGATGCGCTGGCGGAAACCGTGCTGGCGCTGCTG
GCCCAGTACGGTTCGCTGCGCATCGCCGGACTCTACCGGGTACGCCACGACCGCACCCCGGAGCCGCAACCC
TTGGCGACGCTCGGCGAGATGCCGGTGCTGGACGCCGACGACCTGCTGGTGCGCACCTGCCTGGAGCGCGGC
GAACTGGTCAGCGTGCGCCAGGAACTGCTGGAGCGCGGCGAGCAGCGTGCGCACAGCGCGCTGCAGGTGTGC
GTGCCGCTGGTCGACACCGATGGGCGGATCCTCGCCCTGCTGGCGGTGGAGCAGATGCCGTTCTTCGTCTTC
AACGAACGTACCTTCAGCCTGCTGGCGATCCTCGCCGGGCACATCGCCGACTTGCTGCAGAGCGACCGTCGC
GCACTGCAACTGGCCGACATCGACGCCCAGCGCTTCTCCCAGTACCTCAAGCGCTCCCTGCTGGACGCCCGC
GACCATGGATTGCCGGCCTGCCTGTATGCCTTCGAGTTGACCGATGCGCGCTACGGCGAAGAGGTCCAGCGT
CTGCTGGAAGGCAGCCAGCGTGGCCTCGACGTGCAGTTGCGACTGCGCAACGACGAGGGCCGGCGGGTCCTG
CTGGTGTTGTTGCCGCTGACTTCCGCCGAAGGCTCCCAGGGGTATCTGCAGCGCCTGAGGATTCTCTTCGCC
GAACGCTTCGGCCAGGCCCGCGAGCTGGAGTCGCTGGGCGTGCGCATCCGCCAGTACGAACTGGACGCCGGC
AACGATCGCCAGGCGCTGGGACATTTCCTTTTCAACGAGTGCGGCCTGAATGATCAGCAAGTGGCTGTTTAG

Translation:

MSAHKDFTLAPRASGSVSWVETLVISALALGLGWWFSPDDPLQVNATFPWVILAPLLLGMRYGFVRGLASAA
LLVAALFAFRVQGVEAYAQVPAAFIVGVLLCAMLVGEFRDIWERRLERLELANEYRQLRLDEFTRAHHILRI
SHDRLEQRVAGNDQSLRSSLLGLRQLLRELPGDEAPLDALAETVLALLAQYGSLRIAGLYRVRHDRTPEPQP
LATLGEMPVLDADDLLVRTCLERGELVSVRQELLERGEQRAHSALQVCVPLVDTDGRILALLAVEQMPFFVF
NERTFSLLAILAGHIADLLQSDRRALQLADIDAQRFSQYLKRSLLDARDHGLPACLYAFELTDARYGEEVQR
LLEGSQRGLDVQLRLRNDEGRRVLLVLLPLTSAEGSQGYLQRLRILFAERFGQARELESLGVRIRQYELDAG
NDRQALGHFLFNECGLNDQQVAV*

AnnotationID:1158 GeneID:1149

AnnotatorUID: danlee

Modification Date/Time: 2006-02-02 12:12:04

Gene Name: pelD

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA3061

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Part of pelABCDEFG cluster involved in biofilm matrix formation in P. aeruginosa PA14 and ZK2870.

Comment:

ReferenceID:2301

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19443

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1149

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2049 PA3061_tr translation of PA3061 455 98.90 99.56 0 2270.0

69055 gb|AAG06449.1|AE004730_13 (AE004730) hypothetical protein PA3061 [Pseudomonas aeruginosa PAO1] 455 98.90 99.56 0 2270.0

GC ORFID: `44151`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3061`	Glimmer Score:
Start: `2811492`	Stop: `2810125`
Length: `1368`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA3061 translation of PA3061`	Homolog Bit Score `879.0`
Other Homologs: `t_PA3061 (ORF: GLIMMER)`
GC ORF Sequence
ATGTCCGCGCACAAGGATTTCACCCTCGCACCGCGCGCCAGCGGCAGTGTCTCCTGGGTCGAGACGCTGGTC ATCAGCGCGCTCGCGCTGGGCCTGGGCTGGTGGTTCAGCCCGGACGACCCGCTGCAGGTCAACGCCACCTTT CCCTGGGTGATCCTCGCGCCCCTGTTGCTGGGCATGCGCTACGGCTTCGTCCGCGGGTTGGCCAGCGCGGCG CTGCTGGTGGCGGCGCTGTTCGCGTTTCGCGTCCAGGGCGTCGAGGCCTATGCCCAGGTACCGGCGGCCTTC ATCGTCGGCGTGCTGCTCTGCGCCATGTTGGTGGGCGAGTTCCGCGACATCTGGGAACGCCGCCTGGAGCGC CTGGAGCTGGCGAACGAGTACCGCCAGTTGCGCCTCGACGAATTCACCCGCGCCCATCACATCCTGCGCATC TCCCACGATCGCCTGGAGCAGCGGGTCGCCGGCAACGACCAGAGCCTGCGCAGTTCGCTGCTCGGTCTGCGA CAACTGCTGCGCGAGCTGCCGGGCGATGAGGCACCGCTCGATGCGCTGGCGGAAACCGTGCTGGCGCTGCTG GCCCAGTACGGTTCGCTGCGCATCGCCGGACTCTACCGGGTACGCCACGACCGCACCCCGGAGCCGCAACCC TTGGCGACGCTCGGCGAGATGCCGGTGCTGGACGCCGACGACCTGCTGGTGCGCACCTGCCTGGAGCGCGGC GAACTGGTCAGCGTGCGCCAGGAACTGCTGGAGCGCGGCGAGCAGCGTGCGCACAGCGCGCTGCAGGTGTGC GTGCCGCTGGTCGACACCGATGGGCGGATCCTCGCCCTGCTGGCGGTGGAGCAGATGCCGTTCTTCGTCTTC AACGAACGTACCTTCAGCCTGCTGGCGATCCTCGCCGGGCACATCGCCGACTTGCTGCAGAGCGACCGTCGC GCACTGCAACTGGCCGACATCGACGCCCAGCGCTTCTCCCAGTACCTCAAGCGCTCCCTGCTGGACGCCCGC GACCATGGATTGCCGGCCTGCCTGTATGCCTTCGAGTTGACCGATGCGCGCTACGGCGAAGAGGTCCAGCGT CTGCTGGAAGGCAGCCAGCGTGGCCTCGACGTGCAGTTGCGACTGCGCAACGACGAGGGCCGGCGGGTCCTG CTGGTGTTGTTGCCGCTGACTTCCGCCGAAGGCTCCCAGGGGTATCTGCAGCGCCTGAGGATTCTCTTCGCC GAACGCTTCGGCCAGGCCCGCGAGCTGGAGTCGCTGGGCGTGCGCATCCGCCAGTACGAACTGGACGCCGGC AACGATCGCCAGGCGCTGGGACATTTCCTTTTCAACGAGTGCGGCCTGAATGATCAGCAAGTGGCTGTTTAG