ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1148

TrivialName: PA14_34100

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_34100

PAO1 Ortholog Locus: PA2363

Sequence Length: 1332

Protein Length: 443

Start: 3030453

Stop: 3031784

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05751.1|AE004662_6 (AE004662) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 437/443 (98%), Positives = 440/443 (99%)

Sequence:

ATGAGTGTTCTGCCTGACGCGGTGTGCTGGCACGAAGGGATGCAACTGCTTCCCCAGCATTTCCAGTTGCAG
GGATTGCGTGCCGAGGCGCTGGCGGCGCGCACCGGACAGGCCTGCAACCCTTGGTTCTGGGGCGTGACCGCC
CTGGAACTGGACCCCTCGGCGTTGTGCGCCGGCCAAGTGCGGATCCTGCACCTCGAAGCGATCCTGCCCGAC
GGCCTGCCGGTGAGCGTGCAGGCTGGTGTCGACGCACCGCTGGAGTTCGACCTGGAGACTGCGCTGGCGGCC
GCCGAAGGGCCGCTGCTGAACGTCCACCTGGCGGTCAGTCCGCTGTGGCGGGCGGGTCAGTTGCTGCCGCTG
AAGGGCCGTCTGCAATCGCGGGTCGGCGCGCCGCTGCCGGACCTGGCCAGCGGCGAGCACCCCGAGCCGATC
ACCGTCTGGCGAGCGTCGCTGCGGCTGGTCGGCGACGACGGCAAGGCCGACTCCGTGTGCCTGCCGTTGCTG
CGCGTGGCGAAGGAGGGCGGCGCCTATGTCAGCCTGCCCTACGTCCCGCCGACGCCATTGGTGCTGCCGGAG
TCGCCCCTGGGCAGGCGCGTGCAGTCGCTCTGCGCGCGGGCCCGGGAGAAGGCGCTGTTCCTCGGCGGGCGC
CTGCGCCTGGCGCAGCAGGCGGGCAACCAGGACGACGCGGTGGAAGTCCGTCGCCAGCTCGCCGCGCTCTGG
ACCCGCCTGCCGGAGGTGGAAGGCCTGCTGGCAAGCCGCGCGGCCTCGCCGCTGGCCCTGCACGGCAGCCTG
CTGGGCCTGGCCGGGGCCTGGGCGGCGCTCGATCCGCTGGCCGGCGTGCCGGCCTTCGAAGCGCTCGACTTC
CTCGACCTGCGGCGTGGCTACGAGCCGCTGCTGGACTGGCTGGAGCGCGCCATCGAGTCGATCCGCGCGGGC
TACCGCTGCCTGCCGTTCGAGCAGGAGGAACAGGTATTTTCCGTGCGCCTGCCCGATCCGGCGCCGCGTCAG
CGCCTGGTGGTCGGCCTGCGGATGCCCGCCGGCGCCGGCGAACAAGCGGCGGCTGACTGGCTGGAGCGCGCC
ATCGTCGCCTCCGACCCGCACCTGCCGTTGCTCGCCCGGCAACGCATGAGCGGGCTGGCGCGGCAGCCGATG
AATCGCCAGGAACAGGTGGCCTACAGCGTCGGCGACGACACCCGTTTGTTCGTCGTGCAGGGCGTCGGCGAC
TGGTTCGATGCCGGCCAGCCGCTGCGCATCGTCGCGCCGGTCAGCGGGGTCGCCAGCAGTCCCTGGCAGATC
GTGCTGTTCGTCGCCGACGGCAGCGACAACACCTAG

Translation:

MSVLPDAVCWHEGMQLLPQHFQLQGLRAEALAARTGQACNPWFWGVTALELDPSALCAGQVRILHLEAILPD
GLPVSVQAGVDAPLEFDLETALAAAEGPLLNVHLAVSPLWRAGQLLPLKGRLQSRVGAPLPDLASGEHPEPI
TVWRASLRLVGDDGKADSVCLPLLRVAKEGGAYVSLPYVPPTPLVLPESPLGRRVQSLCARAREKALFLGGR
LRLAQQAGNQDDAVEVRRQLAALWTRLPEVEGLLASRAASPLALHGSLLGLAGAWAALDPLAGVPAFEALDF
LDLRRGYEPLLDWLERAIESIRAGYRCLPFEQEEQVFSVRLPDPAPRQRLVVGLRMPAGAGEQAAADWLERA
IVASDPHLPLLARQRMSGLARQPMNRQEQVAYSVGDDTRLFVVQGVGDWFDAGQPLRIVAPVSGVASSPWQI
VLFVADGSDNT*

AnnotationID:1157 GeneID:1148

AnnotatorUID: diggins

Modification Date/Time: 2005-03-04 16:04:34

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA2363

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2299

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19441

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32909

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1148_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1148

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2048 PA2363_tr translation of PA2363 443 98.64 99.32 0 2271.0

69054 gb|AAG05751.1|AE004662_6 (AE004662) hypothetical protein PA2363 [Pseudomonas aeruginosa PAO1] 443 98.64 99.32 0 2271.0

GC ORFID: `44150`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2363`	Glimmer Score:
Start: `1923463`	Stop: `1922132`
Length: `1332`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA2363 translation of PA2363`	Homolog Bit Score `879.0`
Other Homologs: `t_PA2363 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGTGTTCTGCCTGACGCGGTGTGCTGGCACGAAGGGATGCAACTGCTTCCCCAGCATTTCCAGTTGCAG GGATTGCGTGCCGAGGCGCTGGCGGCGCGCACCGGACAGGCCTGCAACCCTTGGTTCTGGGGCGTGACCGCC CTGGAACTGGACCCCTCGGCGTTGTGCGCCGGCCAAGTGCGGATCCTGCACCTCGAAGCGATCCTGCCCGAC GGCCTGCCGGTGAGCGTGCAGGCTGGTGTCGACGCACCGCTGGAGTTCGACCTGGAGACTGCGCTGGCGGCC GCCGAAGGGCCGCTGCTGAACGTCCACCTGGCGGTCAGTCCGCTGTGGCGGGCGGGTCAGTTGCTGCCGCTG AAGGGCCGTCTGCAATCGCGGGTCGGCGCGCCGCTGCCGGACCTGGCCAGCGGCGAGCACCCCGAGCCGATC ACCGTCTGGCGAGCGTCGCTGCGGCTGGTCGGCGACGACGGCAAGGCCGACTCCGTGTGCCTGCCGTTGCTG CGCGTGGCGAAGGAGGGCGGCGCCTATGTCAGCCTGCCCTACGTCCCGCCGACGCCATTGGTGCTGCCGGAG TCGCCCCTGGGCAGGCGCGTGCAGTCGCTCTGCGCGCGGGCCCGGGAGAAGGCGCTGTTCCTCGGCGGGCGC CTGCGCCTGGCGCAGCAGGCGGGCAACCAGGACGACGCGGTGGAAGTCCGTCGCCAGCTCGCCGCGCTCTGG ACCCGCCTGCCGGAGGTGGAAGGCCTGCTGGCAAGCCGCGCGGCCTCGCCGCTGGCCCTGCACGGCAGCCTG CTGGGCCTGGCCGGGGCCTGGGCGGCGCTCGATCCGCTGGCCGGCGTGCCGGCCTTCGAAGCGCTCGACTTC CTCGACCTGCGGCGTGGCTACGAGCCGCTGCTGGACTGGCTGGAGCGCGCCATCGAGTCGATCCGCGCGGGC TACCGCTGCCTGCCGTTCGAGCAGGAGGAACAGGTATTTTCCGTGCGCCTGCCCGATCCGGCGCCGCGTCAG CGCCTGGTGGTCGGCCTGCGGATGCCCGCCGGCGCCGGCGAACAAGCGGCGGCTGACTGGCTGGAGCGCGCC ATCGTCGCCTCCGACCCGCACCTGCCGTTGCTCGCCCGGCAACGCATGAGCGGGCTGGCGCGGCAGCCGATG AATCGCCAGGAACAGGTGGCCTACAGCGTCGGCGACGACACCCGTTTGTTCGTCGTGCAGGGCGTCGGCGAC TGGTTCGATGCCGGCCAGCCGCTGCGCATCGTCGCGCCGGTCAGCGGGGTCGCCAGCAGTCCCTGGCAGATC GTGCTGTTCGTCGCCGACGGCAGCGACAACACCTAG