ViewGene
Locus Name:
GeneID:
Location:

GeneID:1146
TrivialName: PA14_50100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50100
PAO1 Ortholog Locus:PA1104
Sequence Length:1356
Protein Length:451
Start: 4453910
Stop: 4452555
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04493.1|AE004540_13 (AE004540) flagellum-specific ATP synthase FliI [Pseudomonas aeruginosa PAO1]
Identities = 451/451 (100%), Positives = 451/451 (100%)
Sequence:
ATGCGCCTTGAGCGAACCAGTTTCGCCAGGCGCCTGGAGGGCTACACCGAGGCTGTCTCGCTGCCGGCGCAG
CCGGTGGTCGAGGGCCGCCTGCTGCGCATGGTCGGCCTGACCCTCGAAGCCGAGGGCTTGCAGGCCGCGGTC
GGCAGCCGCTGCAACGTGATCAACGAAAGCGGCTACCACCCGGTGCAGGTGGAGGCCGAAGTGATGGGCTTT
TCCGGTAGCAAGGTGTACCTGATGCCGGTCGGCAGCCTCGCCGGCATCGCGCCCGGCGCGCGGGTCGTGCCG
CTGCCGGACACCGGGCGCCTGCCGATGGGCATGTCGATGCTCGGCCGCGTGCTCGACGGCGCCGGCCGCGCC
CTCGACGGCAAGGGCGGGATGCGCGCCGAAGACTGGGTGCCGATGGACGGCCCGACGATCAACCCGCTCAAG
CGCCACCCGATCAGCGAACCTCTCGACGTCGGCATCCGCTCGATCAATGGCCTGCTCACGGTCGGCCGCGGC
CAGCGCCTCGGCCTGTTCGCCGGTACCGGGGTGGGCAAGTCGGTGCTGCTGGGGATGATGACCCGTTTCACC
AGGGCCGACATCATCGTCGTCGGTCTGATCGGCGAGCGGGGCCGCGAGGTGAAGGAGTTCATCGACGAGATC
CTCGGCGAGGAAGGCCTCAAGCGCTCCGTGGTGGTCGCCTCGCCGGCCGACGACGCGCCGCTGATGCGCCTG
CGTGCCGCGCAATACTGCACGCGGATCGCCGAGTACTTCCGCGACAAGGGCAAGAACGTATTGCTGCTGATG
GACTCGCTGACCCGCTACGCCCAGGCCCAGCGCGAGATCGCCCTGGCCATCGGCGAGCCACCGGCGACCAAG
GGGTATCCGCCATCGGTGTTCGCCAAGCTGCCGAAGCTGGTGGAACGCGCCGGCAATGCCGAAGCCGGTGGC
GGCTCGATCACCGCGTTCTACACCGTGCTCTCCGAGGGCGACGACCAGCAGGACCCGATCGCCGACGCCGCT
CGCGGCGTGCTCGACGGGCACTTCGTATTGTCCCGGCGGTTGGCCGAGGAAGGCCACTATCCGGCCATCGAT
ATCGAAGCTTCGATCAGCCGGGTGATGCCGCAGGTGGTCGAGGCCGAGCACCTGCGCGACGCCCAGCGCTTC
AAGCAGCTCTGGTCGCGCTACCAGCAGAGTCGCGATCTGATCAGCGTCGGTGCCTACGTGGCCGGCGGCGAT
CCCGAGACCGACCTGGCCATCGCTCGCTTCCCGGTCATGCGCCAGTTCCTGCGCCAGGGCCTCGACGAAAGC
GAAAGCCTGGCGGAAAGCCGTGCGCGGCTGGCGAGCCTGCTCGCCGGCGGGCAGGCCTGA
Translation:
MRLERTSFARRLEGYTEAVSLPAQPVVEGRLLRMVGLTLEAEGLQAAVGSRCNVINESGYHPVQVEAEVMGF
SGSKVYLMPVGSLAGIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGRALDGKGGMRAEDWVPMDGPTINPLK
RHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTRADIIVVGLIGERGREVKEFIDEI
LGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATK
GYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAID
IEASISRVMPQVVEAEHLRDAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARFPVMRQFLRQGLDES
ESLAESRARLASLLAGGQA*
AnnotationID:1155GeneID:1146
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 12:12:39
Gene Name:fliI
Confidence Code:2
GeneProduct:flagellum-specific ATP synthase FliI
Cell Localization:()
Synonyms:PA1104
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1157
Secondary Functional Category(ies):Energy metabolism
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly; Oxidative phosphorylation 
Homology:






 
Structural Features:
COG1157, FliI, Flagellar biosynthesis/type III secretory pathway ATPase [Cell 
motility and secretion / Intracellular trafficking and secretion]
             CD-Length = 441 residues,  99.3% aligned
             Score =  603 bits (1556), Expect = 1e-173






   
Genomic Context:
fliFGHI (Ecoli) 






   
Comment:


















    ReferenceID:2295




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19437




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32717




  
Author/Investigator(s):
        Dreyfus G, Williams AW, Kawagishi I, Macnab RM.





  
Title:
        Genetic and biochemical analysis of Salmonella typhimurium FliI, a flagellar protein related to the catalytic subunit of the F0F1 ATPase and to virulence proteins of mammalian and plant pathogens.





  
PubMed:
        93259961


MedLine:
        




    
Source:
J Bacteriol. 1993 May;175(10):3131-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1146
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2044
                           PA1104_tr
                           translation of PA1104
                           451
                           99.99
                           99.99
                           0
                           2272.0
     

     
     
68868
                           gb|AAG04493.1|AE004540_13
                           (AE004540) flagellum-specific ATP synthase FliI [Pseudomonas aeruginosa PAO1]
                           451
                           99.99
                           99.99
                           0
                           2272.0
     

     
     
68869
                           gb|AAN69944.1|AE016633_2
                           (AE016790) flagellum-specific ATP synthase FliI [Pseudomonas putida KT2440]
                           460
                           84.34
                           90.00
                           12
                           1965.0
     

     
     
68870
                           gb|AAO55479.1|
                           (AE016862) flagellum-specific ATP synthase FliI [Pseudomonas syringae pv. tomato str. DC3000]
                           454
                           84.14
                           90.52
                           5
                           1934.0
     

     
     
68871
                           gb|AAN56224.1|AE015760_3
                           (AE015760) flagellum-specific ATP synthase FliI [Shewanella oneidensis MR-1]
                           451
                           63.19
                           74.50
                           6
                           1391.0
     

     






      

          
GC ORFID: 44148How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1104Glimmer Score: 

          
Start: 499998Stop: 501353

          
Length: 1356


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1104 translation of PA1104Homolog Bit Score 879.0

          
Other Homologs:  t_PA1697 (ORF: BLASTX 373.0), psyr_15may02_Scaffold3_revised_gene4880 (ORF: BLASTX 328.0), t_PA1104 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTTGAGCGAACCAGTTTCGCCAGGCGCCTGGAGGGCTACACCGAGGCTGTCTCGCTGCCGGCGCAG 
CCGGTGGTCGAGGGCCGCCTGCTGCGCATGGTCGGCCTGACCCTCGAAGCCGAGGGCTTGCAGGCCGCGGTC 
GGCAGCCGCTGCAACGTGATCAACGAAAGCGGCTACCACCCGGTGCAGGTGGAGGCCGAAGTGATGGGCTTT 
TCCGGTAGCAAGGTGTACCTGATGCCGGTCGGCAGCCTCGCCGGCATCGCGCCCGGCGCGCGGGTCGTGCCG 
CTGCCGGACACCGGGCGCCTGCCGATGGGCATGTCGATGCTCGGCCGCGTGCTCGACGGCGCCGGCCGCGCC 
CTCGACGGCAAGGGCGGGATGCGCGCCGAAGACTGGGTGCCGATGGACGGCCCGACGATCAACCCGCTCAAG 
CGCCACCCGATCAGCGAACCTCTCGACGTCGGCATCCGCTCGATCAATGGCCTGCTCACGGTCGGCCGCGGC 
CAGCGCCTCGGCCTGTTCGCCGGTACCGGGGTGGGCAAGTCGGTGCTGCTGGGGATGATGACCCGTTTCACC 
AGGGCCGACATCATCGTCGTCGGTCTGATCGGCGAGCGGGGCCGCGAGGTGAAGGAGTTCATCGACGAGATC 
CTCGGCGAGGAAGGCCTCAAGCGCTCCGTGGTGGTCGCCTCGCCGGCCGACGACGCGCCGCTGATGCGCCTG 
CGTGCCGCGCAATACTGCACGCGGATCGCCGAGTACTTCCGCGACAAGGGCAAGAACGTATTGCTGCTGATG 
GACTCGCTGACCCGCTACGCCCAGGCCCAGCGCGAGATCGCCCTGGCCATCGGCGAGCCACCGGCGACCAAG 
GGGTATCCGCCATCGGTGTTCGCCAAGCTGCCGAAGCTGGTGGAACGCGCCGGCAATGCCGAAGCCGGTGGC 
GGCTCGATCACCGCGTTCTACACCGTGCTCTCCGAGGGCGACGACCAGCAGGACCCGATCGCCGACGCCGCT 
CGCGGCGTGCTCGACGGGCACTTCGTATTGTCCCGGCGGTTGGCCGAGGAAGGCCACTATCCGGCCATCGAT 
ATCGAAGCTTCGATCAGCCGGGTGATGCCGCAGGTGGTCGAGGCCGAGCACCTGCGCGACGCCCAGCGCTTC 
AAGCAGCTCTGGTCGCGCTACCAGCAGAGTCGCGATCTGATCAGCGTCGGTGCCTACGTGGCCGGCGGCGAT 
CCCGAGACCGACCTGGCCATCGCTCGCTTCCCGGTCATGCGCCAGTTCCTGCGCCAGGGCCTCGACGAAAGC 
GAAAGCCTGGCGGAAAGCCGTGCGCGGCTGGCGAGCCTGCTCGCCGGCGGGCAGGCCTGA