ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1143

TrivialName: PA14_56170

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_56170

PAO1 Ortholog Locus: PA4323

Sequence Length: 1332

Protein Length: 443

Start: 5015756

Stop: 5017087

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07711.1|AE004848_10 (AE004848) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 440/443 (99%), Positives = 440/443 (99%)

Sequence:

ATGAAGCCATCGCGCGCCCTGCTGGCGCTGTTCGCCGTGCTCCTGCTGCTGGCCATCGGCCTGGGCAGCCTG
TCGGCGCTCGGCCAGCGGTTGCCTGCGCAACTGCATACATTCTGGTGGGCGGCGCTCGCCGCGCTGCTCCTG
CTCGGCCTGCTGGACGCCCTGTGGGCACGCCGCCAGCCGGTGCCGAAGCTGAGCCGCCAGCTCAGCGGCAAC
CTGCCGCTGGGGCGCTGGAGCGAAGTGCGCCTGCATCTGCAGCACACCTATCGGCGTCCGGTTCGCCTGACC
CTGTTCGATCACCTGCCGGCCGGTATGGATTTCGAGTACCTGCCGCAGGAGGTCGAACTGCGCCCGGGCGAA
AGCACCGAGGTCGGCTACCGGGTGCGGCCGCTCAACCGCGGTCACTTCGTGTTTCCCCGCTGCGAGCTGGAA
CTGCCCAGCCCGCTGCGCCTGTGGCGGCAGCGCCGCTACCTGGAAGCACGTGGCGAGACCCGCGTCTACCCG
GACTTCGCCCGCCTCTACGGCGCCGAACTGATGGCGGTCGACCACTGGCTCAACCAGATCGGCGTACGCGGC
GGCCAGCGCCGCGGCCTCGGCCTGGAGTTCCACCAGTTGCGCGAATTCCGCGACGGCGACACCCTGCGCCAG
ATCGACTGGAAGGCCACCGCTCGCAAACGCACGCCGATCGCCCGCGAATACCAGGACGAACGCGACCAGCAG
ATCCTCTTCCTGCTCGACTGCGGCCGCCGCATGCGTAGCCAGGACGGCGACCTGTCGCACTTCGACCATGCC
CTCAACGCCAGCCTGCTGCTGGCCTACGTGGCCCTGCGCCAGGGCGATGCGGTGGGCGCCATGACCTTCGCC
GGCGACGACCGCCGGCACCTCCCGCCGGGCAAGGGCAGCGCCCAGCTCGGCGCGCTGCTCAACACCGTCTAC
GACCTGCAGACCAGCCAGCGTCCCGCCGACTTCCCGGAAGCCGTGCAGGCGGTGCTGTCCCGCCAGCGGCGG
CGGGCCCTGGTGATCCTGGTAACCAACCTGCGCGACGAGGACGACGAAGAACTGCTCGGCGCGGTGAAACGC
CTGGGCCGCCAGCACCGGGTGCTGGTCGCCAGCCTGCGCGAGGAAGTGCTCGACACCCTGCGCCAGGAGCCG
GTCGCCCGCTACGAGCAGGCGCTCGCCTACACCGGCACCATCGACTACCTGAATGCGCGCAACGGCCTCCAC
GAGAAGCTCGCGGCCCACGGCGTGCCAGTGCTCGATGCGCGTCCCAGCGAACTCGGGCCGGAGCTGATCAGC
CGCTACCTGGGCTGGAAGCGCGCCGGCGTGCTTTGA

Translation:

MKPSRALLALFAVLLLLAIGLGSLSALGQRLPAQLHTFWWAALAALLLLGLLDALWARRQPVPKLSRQLSGN
LPLGRWSEVRLHLQHTYRRPVRLTLFDHLPAGMDFEYLPQEVELRPGESTEVGYRVRPLNRGHFVFPRCELE
LPSPLRLWRQRRYLEARGETRVYPDFARLYGAELMAVDHWLNQIGVRGGQRRGLGLEFHQLREFRDGDTLRQ
IDWKATARKRTPIAREYQDERDQQILFLLDCGRRMRSQDGDLSHFDHALNASLLLAYVALRQGDAVGAMTFA
GDDRRHLPPGKGSAQLGALLNTVYDLQTSQRPADFPEAVQAVLSRQRRRALVILVTNLRDEDDEELLGAVKR
LGRQHRVLVASLREEVLDTLRQEPVARYEQALAYTGTIDYLNARNGLHEKLAAHGVPVLDARPSELGPELIS
RYLGWKRAGVL*

AnnotationID:1152 GeneID:1143

AnnotatorUID: diggins

Modification Date/Time: 2005-04-04 13:01:27

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA4323

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2289

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19431

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36667

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1143_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1143

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2040 PA4323_tr translation of PA4323 443 99.32 99.32 0 2273.0

68810 gb|AAG07711.1|AE004848_10 (AE004848) hypothetical protein PA4323 [Pseudomonas aeruginosa PAO1] 443 99.32 99.32 0 2273.0

68811 gb|AAO57785.1| (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 447 61.07 78.29 4 1467.0

GC ORFID: `44145`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4323`	Glimmer Score:
Start: `4279432`	Stop: `4280763`
Length: `1332`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4323 translation of PA4323`	Homolog Bit Score `880.0`
Other Homologs: `psyr_15may02_Scaffold12_revised_gene1951 (ORF: BLASTX 568.0), t_PA4323 (ORF: GLIMMER)`
GC ORF Sequence
ATGAAGCCATCGCGCGCCCTGCTGGCGCTGTTCGCCGTGCTCCTGCTGCTGGCCATCGGCCTGGGCAGCCTG TCGGCGCTCGGCCAGCGGTTGCCTGCGCAACTGCATACATTCTGGTGGGCGGCGCTCGCCGCGCTGCTCCTG CTCGGCCTGCTGGACGCCCTGTGGGCACGCCGCCAGCCGGTGCCGAAGCTGAGCCGCCAGCTCAGCGGCAAC CTGCCGCTGGGGCGCTGGAGCGAAGTGCGCCTGCATCTGCAGCACACCTATCGGCGTCCGGTTCGCCTGACC CTGTTCGATCACCTGCCGGCCGGTATGGATTTCGAGTACCTGCCGCAGGAGGTCGAACTGCGCCCGGGCGAA AGCACCGAGGTCGGCTACCGGGTGCGGCCGCTCAACCGCGGTCACTTCGTGTTTCCCCGCTGCGAGCTGGAA CTGCCCAGCCCGCTGCGCCTGTGGCGGCAGCGCCGCTACCTGGAAGCACGTGGCGAGACCCGCGTCTACCCG GACTTCGCCCGCCTCTACGGCGCCGAACTGATGGCGGTCGACCACTGGCTCAACCAGATCGGCGTACGCGGC GGCCAGCGCCGCGGCCTCGGCCTGGAGTTCCACCAGTTGCGCGAATTCCGCGACGGCGACACCCTGCGCCAG ATCGACTGGAAGGCCACCGCTCGCAAACGCACGCCGATCGCCCGCGAATACCAGGACGAACGCGACCAGCAG ATCCTCTTCCTGCTCGACTGCGGCCGCCGCATGCGTAGCCAGGACGGCGACCTGTCGCACTTCGACCATGCC CTCAACGCCAGCCTGCTGCTGGCCTACGTGGCCCTGCGCCAGGGCGATGCGGTGGGCGCCATGACCTTCGCC GGCGACGACCGCCGGCACCTCCCGCCGGGCAAGGGCAGCGCCCAGCTCGGCGCGCTGCTCAACACCGTCTAC GACCTGCAGACCAGCCAGCGTCCCGCCGACTTCCCGGAAGCCGTGCAGGCGGTGCTGTCCCGCCAGCGGCGG CGGGCCCTGGTGATCCTGGTAACCAACCTGCGCGACGAGGACGACGAAGAACTGCTCGGCGCGGTGAAACGC CTGGGCCGCCAGCACCGGGTGCTGGTCGCCAGCCTGCGCGAGGAAGTGCTCGACACCCTGCGCCAGGAGCCG GTCGCCCGCTACGAGCAGGCGCTCGCCTACACCGGCACCATCGACTACCTGAATGCGCGCAACGGCCTCCAC GAGAAGCTCGCGGCCCACGGCGTGCCAGTGCTCGATGCGCGTCCCAGCGAACTCGGGCCGGAGCTGATCAGC CGCTACCTGGGCTGGAAGCGCGCCGGCGTGCTTTGA