ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1141

TrivialName: PA14_24560

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_24560

PAO1 Ortholog Locus: PA3058

Sequence Length: 1371

Protein Length: 456

Start: 2146293

Stop: 2147663

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06446.1|AE004730_10 (AE004730) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 455/456 (99%), Positives = 455/456 (99%)

Sequence:

ATGGCCGGCATCGGCTTCGAACTGCGGAAGATCCTTTCCCGCGATTCCTATACGGCGACCCTGCGGGCCTAT
CTCTACGCCGGGCTGATCAGCTCCGGTCCCTGGGTGCTGTCGATCGTCAGCGTGATGCTGATCGGCGTGCTG
AGCCTCGGCGTGGTGGTGCCGGACGTGCTGGTCCGGCAGTTCCTGATCACGGTGACCTACCTGATGGCGCTG
TCGCTGATCTTCACCGGGGGACTGCAACTGTTCTTCACCCGCTTCATTTCCGATCGCCTGTTCGAGCGCAAG
CACGAGGCGATCCTGCCCAACCTGGTGGGTGTGCTGTTGCTGGTGACGTTGGCGGCGGGCCTGCTCTCGGCG
ATATTGCTGGCGACCCTGTTCGATGAGCCGTTCGCCTACCGCCTGCTGGTGATGGCCAACTTCGTGGTGCTC
TGCAACCTGTGGCTGGTGATCATCTTCCTGTCGGGAATGAAGGCCTACAAACGCATCCTGCTGGTGATGTTC
ATCGGCTACGCGCTGATGGTCGCCTGTGCCTACCTGCTGCGTTTCATGCAGATGGACGGCCTGCTGCTGGCA
TTGCTGATCGGCCACGCCAGCCTGCTGTTCGTCTTCCTCTACGACATCCTCCGCGAGTACCCGGCCAGGCGC
ATGGTGGCCTTCGACTTCCTCGACCGCCGGCAGGTCTTCGTCAGCCTGCTGCTGACCGGCCTCTGCTACAAC
CTGGGCATCTGGATCGACAAGTTCATCTTCTGGTTCAACCCATCCACCTCGGACCTGGTGATCGGCCCGCTG
CGCGCCTCGATCCTCTACGACCTGCCGATCTTCCTCGCCTACCTGTCGATCATTCCCGGCATGGCGGTGTTC
CTGGTGCGCATCGAGACCGACTTCGCCGAGTGGTACGAGCGGGTCTACGAGGCGATCCGCGGCGGCGAGACC
CTGCAGCACATCGGCCTGCTCAAGGAGCAGATGATCCTCGCCATCCGCCAGGGCCTGCTGGAAATCTGCAAG
GTGCAGGGGCTGGCGGTGGTCCTGCTGTTCCTGCTGGCGCCGCAACTGCTCGGCTGGCTGGGAATTTCCCGC
TACTACCTGCCGCTGTTCTACATCGACCTGATCGGGGTGAGCATCCAGGTAGTGTTCATGGCCTTGCTCAAC
GTCTTCTTCTACCTGGACAAGCGCCGCATCGTCCTCGAACTCTGCGTGCTGTTCGTGATCGTCAACGGCGTC
CTGACCTTCGTCAGCCTGCTGCTCGGGCCGAGCTTCTTCGGCTACGGCTTCACCCTGTCGCTGCTGGTCTGC
GTGCTGGTCGGGCTGTACCGCCTGACCACCGCGCTGGACGACCTGGAGTACGAGACCTTCATGCTCAATCGC
TGA

Translation:

MAGIGFELRKILSRDSYTATLRAYLYAGLISSGPWVLSIVSVMLIGVLSLGVVVPDVLVRQFLITVTYLMAL
SLIFTGGLQLFFTRFISDRLFERKHEAILPNLVGVLLLVTLAAGLLSAILLATLFDEPFAYRLLVMANFVVL
CNLWLVIIFLSGMKAYKRILLVMFIGYALMVACAYLLRFMQMDGLLLALLIGHASLLFVFLYDILREYPARR
MVAFDFLDRRQVFVSLLLTGLCYNLGIWIDKFIFWFNPSTSDLVIGPLRASILYDLPIFLAYLSIIPGMAVF
LVRIETDFAEWYERVYEAIRGGETLQHIGLLKEQMILAIRQGLLEICKVQGLAVVLLFLLAPQLLGWLGISR
YYLPLFYIDLIGVSIQVVFMALLNVFFYLDKRRIVLELCVLFVIVNGVLTFVSLLLGPSFFGYGFTLSLLVC
VLVGLYRLTTALDDLEYETFMLNR*

AnnotationID:1150 GeneID:1141

AnnotatorUID: danlee

Modification Date/Time: 2006-02-02 12:12:45

Gene Name: pelG

Confidence Code: 4

GeneProduct: PelG

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Required for the production of a glucose-rich matrix component involved in the structure of the mature biofilm 
in P. aeruginosa strains PA14 and ZK2870.

Homology:

Structural Features:

Genomic Context:

Part of a gene cluster pelA to pelG
PA3064 to PA3058

Comment:

ReferenceID:2285

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17090

Author/Investigator(s): Lisa Friedman and Roberto Kolter

Title: Genes involved in matrix formation in Pseudomonas aeruginosa PA14 biofilms

PubMed: 14731271

MedLine:

Source:

 Mol Microbiol. 2004 Feb;51(3):675-90.

Reference Type:

Data:

URL:

ReferenceID:19427

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1141

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2038 PA3058_tr translation of PA3058 456 99.78 99.78 0 2275.0

68762 gb|AAG06446.1|AE004730_10 (AE004730) hypothetical protein PA3058 [Pseudomonas aeruginosa PAO1] 456 99.78 99.78 0 2275.0

68763 emb|CAD15977.1| (AL646069) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 457 53.82 72.21 2 1280.0

GC ORFID: `44143`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3058`	Glimmer Score:
Start: `2807636`	Stop: `2806266`
Length: `1371`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3058 translation of PA3058`	Homolog Bit Score `880.0`
Other Homologs: `t_PA3058 (ORF: GLIMMER)`
GC ORF Sequence
ATGGCCGGCATCGGCTTCGAACTGCGGAAGATCCTTTCCCGCGATTCCTATACGGCGACCCTGCGGGCCTAT CTCTACGCCGGGCTGATCAGCTCCGGTCCCTGGGTGCTGTCGATCGTCAGCGTGATGCTGATCGGCGTGCTG AGCCTCGGCGTGGTGGTGCCGGACGTGCTGGTCCGGCAGTTCCTGATCACGGTGACCTACCTGATGGCGCTG TCGCTGATCTTCACCGGGGGACTGCAACTGTTCTTCACCCGCTTCATTTCCGATCGCCTGTTCGAGCGCAAG CACGAGGCGATCCTGCCCAACCTGGTGGGTGTGCTGTTGCTGGTGACGTTGGCGGCGGGCCTGCTCTCGGCG ATATTGCTGGCGACCCTGTTCGATGAGCCGTTCGCCTACCGCCTGCTGGTGATGGCCAACTTCGTGGTGCTC TGCAACCTGTGGCTGGTGATCATCTTCCTGTCGGGAATGAAGGCCTACAAACGCATCCTGCTGGTGATGTTC ATCGGCTACGCGCTGATGGTCGCCTGTGCCTACCTGCTGCGTTTCATGCAGATGGACGGCCTGCTGCTGGCA TTGCTGATCGGCCACGCCAGCCTGCTGTTCGTCTTCCTCTACGACATCCTCCGCGAGTACCCGGCCAGGCGC ATGGTGGCCTTCGACTTCCTCGACCGCCGGCAGGTCTTCGTCAGCCTGCTGCTGACCGGCCTCTGCTACAAC CTGGGCATCTGGATCGACAAGTTCATCTTCTGGTTCAACCCATCCACCTCGGACCTGGTGATCGGCCCGCTG CGCGCCTCGATCCTCTACGACCTGCCGATCTTCCTCGCCTACCTGTCGATCATTCCCGGCATGGCGGTGTTC CTGGTGCGCATCGAGACCGACTTCGCCGAGTGGTACGAGCGGGTCTACGAGGCGATCCGCGGCGGCGAGACC CTGCAGCACATCGGCCTGCTCAAGGAGCAGATGATCCTCGCCATCCGCCAGGGCCTGCTGGAAATCTGCAAG GTGCAGGGGCTGGCGGTGGTCCTGCTGTTCCTGCTGGCGCCGCAACTGCTCGGCTGGCTGGGAATTTCCCGC TACTACCTGCCGCTGTTCTACATCGACCTGATCGGGGTGAGCATCCAGGTAGTGTTCATGGCCTTGCTCAAC GTCTTCTTCTACCTGGACAAGCGCCGCATCGTCCTCGAACTCTGCGTGCTGTTCGTGATCGTCAACGGCGTC CTGACCTTCGTCAGCCTGCTGCTCGGGCCGAGCTTCTTCGGCTACGGCTTCACCCTGTCGCTGCTGGTCTGC GTGCTGGTCGGGCTGTACCGCCTGACCACCGCGCTGGACGACCTGGAGTACGAGACCTTCATGCTCAATCGC TGA