ViewGene
Locus Name:
GeneID:
Location:

GeneID:1140
TrivialName: PA14_33810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33810
PAO1 Ortholog Locus:PA2386
Sequence Length:1332
Protein Length:443
Start: 3003534
Stop: 3004865
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05774.1|AE004665_1 (AE004665) L-ornithine N5-oxygenase [Pseudomonas aeruginosa PAO1]
Identities = 443/443 (100%), Positives = 443/443 (100%)
Sequence:
ATGACTCAGGCAACTGCAACCGCCGTGGTTCACGATCTCATCGGTGTCGGCTTCGGCCCTTCCAATATCGCC
CTGGCGATTGCCCTCCAGGAACGGGCCCAGGCGCAGGGCGCCCTGGAAGTGCTGTTCCTGGACAAGCAGGGC
GACTACCGCTGGCACGGCAACACCCTGGTGTCGCAGAGCGAGTTGCAGATCTCCTTCCTCAAGGACCTGGTG
TCCCTGCGCAACCCCACCAGCCCGTATTCCTTCGTCAACTACCTGCACAAGCACGATCGCCTGGTCGACTTC
ATCAACCTGGGCACCTTCTATCCCTGCCGGATGGAGTTCAACGACTACCTGCGCTGGGTCGCCAGCCACTTC
CAGGAGCAGAGCCGCTACGGCGAAGAGGTCCTGCGCATCGAGCCGATGCTGAGCGCCGGCCAGGTCGAGGCG
CTGCGGGTGATCTCGCGCAACGCCGACGGCGAGGAGCTGGTGCGCACCACCCGCGCCCTGGTGGTCAGTCCC
GGCGGCACCCCGCGTATCCCGCAGGTGTTCCGTGCGCTCAAGGGCGACGGCCGGGTGTTCCACCACAGCCAG
TACCTGGAACACATGGCCAAGCAGCCCTGCAGCAGTGGCAAGCCGATGAAGATCGCCATTATCGGCGGCGGG
CAGAGCGCGGCGGAGGCCTTCATCGACCTCAACGACAGCTACCCGTCGGTGCAGGCCGACATGATCCTGCGT
GCCTCGGCGCTCAAGCCGGCGGACGATAGCCCGTTCGTCAACGAAGTGTTCGCGCCGAAGTTCACCGATCTC
ATCTACAGCCGCGAACATGCCGAACGCGAGCGTTTGCTGCGCGAATACCACAACACCAACTATTCGGTGGTG
GATACCGACCTGATCGAGCGCATCTACGGCGTCTTCTACCGCCAGAAAGTCTCCGGCATCCCGCGCCACGCC
TTCCGTTGCATGACCACCGTGGAGCGCGCGACCGCCACCGCCCAGGGCATCGAGCTGGCGTTGCGCGACGCA
GGTAGCGGCGAGCTAAGCGTAGAGACCTACGACGCAGTGATCCTGGCCACCGGCTATGAGCGTCAGTTGCAC
CGCCAACTGCTCGAACCGCTGGCGGAGTACCTCGGCGACCACGAGATCGGCCGCGACTACCGCCTGCAGACC
GACGAGCGCTGCAAGGTGGCGATCTACGCGCAGGGCTTCAGCCAGGCCAGTCATGGCCTCAGCGACACCCTG
CTGTCGGTGCTGCCGGTGCGTGCCGAGGAAATCTCTGGCTCCCTGTACCAGCACCTGAAGCCCGGTACTGCG
GCCCGCGCCCTGCACGAGCACGCCCTGGCCAGCTGA
Translation:
MTQATATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLV
SLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEA
LRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGG
QSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVV
DTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLH
RQLLEPLAEYLGDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQHLKPGTA
ARALHEHALAS*
AnnotationID:1149GeneID:1140
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 07:07:47
Gene Name:pvdA
Confidence Code:1
GeneProduct:L-ornithine N5-oxygenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3486
Secondary Functional Category(ies):adaptation, protection
EC Number:1.13.12.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG27518.1|AF230494_1 (AF230494) L-ornithine N5-hydroxylase [Pseudomonas sp. B10]
          Length = 445

 Score =  671 bits (1730), Expect = 0.0
 Identities = 331/443 (74%), Positives = 379/443 (85%)

>gb|AAN69390.1|AE016575_8 (AE016788) L-ornithine N5-oxygenase [Pseudomonas putida KT2440]
          Length = 444

 Score =  561 bits (1445), Expect = e-159
 Identities = 274/429 (63%), Positives = 334/429 (77%), Gaps = 1/429 (0%)

>gb|AAB94515.1| (AF013993) L-ornithine N(5)-oxygenase [Burkholderia cepacia]
          Length = 444

 Score =  379 bits (972), Expect = e-104
 Identities = 204/401 (50%), Positives = 265/401 (66%), Gaps = 9/401 (2%)






 
Structural Features:
COG3486, IucD, Lysine/ornithine N-monooxygenase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 436 residues,  98.9% aligned
Score =  473 bits (1220), Expect = 1e-134
Identities = 178/449 (39%), Positives = 233/449 (51%), Gaps = 29/449 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2283




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19425




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32936




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1140_cdd.html


    		




 
URL:

















    ReferenceID:34484




  
Author/Investigator(s):
        Visca P, Ciervo A, Orsi N.





  
Title:
        Cloning and nucleotide sequence of the pvdA gene encoding the pyoverdin biosynthetic enzyme L-ornithine N5-oxygenase in Pseudomonas aeruginosa.




  
PubMed:
        8106324


MedLine:
        




    
Source:
J Bacteriol. 1994 Feb;176(4):1128-40.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8106324









           
Homologs By Global Alignment 

           

       



     
Gene ID:1140
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2037
                           PA2386_tr
                           translation of PA2386
                           443
                           99.99
                           99.99
                           0
                           2274.0
     

     
     
68757
                           gb|AAG05774.1|AE004665_1
                           (AE004665) L-ornithine N5-oxygenase [Pseudomonas aeruginosa PAO1]
                           443
                           99.99
                           99.99
                           0
                           2274.0
     

     
     
68758
                           emb|CAA80959.1|
                           (Z25465) L-ornithine N5-oxygenase [Pseudomonas aeruginosa]
                           471
                           83.01
                           83.43
                           73
                           1958.0
     

     
     
68759
                           gb|AAG27518.1|AF230494_1
                           (AF230494) L-ornithine N5-hydroxylase [Pseudomonas sp. B10]
                           445
                           74.38
                           85.16
                           2
                           1730.0
     

     
     
68760
                           gb|AAN69390.1|AE016575_8
                           (AE016788) L-ornithine N5-oxygenase [Pseudomonas putida KT2440]
                           450
                           61.77
                           75.33
                           13
                           1451.0
     

     






      

          
GC ORFID: 44142How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2386Glimmer Score: 

          
Start: 1950382Stop: 1949051

          
Length: 1332


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2386 translation of PA2386Homolog Bit Score 880.0

          
Other Homologs:  t_PA2386 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTCAGGCAACTGCAACCGCCGTGGTTCACGATCTCATCGGTGTCGGCTTCGGCCCTTCCAATATCGCC 
CTGGCGATTGCCCTCCAGGAACGGGCCCAGGCGCAGGGCGCCCTGGAAGTGCTGTTCCTGGACAAGCAGGGC 
GACTACCGCTGGCACGGCAACACCCTGGTGTCGCAGAGCGAGTTGCAGATCTCCTTCCTCAAGGACCTGGTG 
TCCCTGCGCAACCCCACCAGCCCGTATTCCTTCGTCAACTACCTGCACAAGCACGATCGCCTGGTCGACTTC 
ATCAACCTGGGCACCTTCTATCCCTGCCGGATGGAGTTCAACGACTACCTGCGCTGGGTCGCCAGCCACTTC 
CAGGAGCAGAGCCGCTACGGCGAAGAGGTCCTGCGCATCGAGCCGATGCTGAGCGCCGGCCAGGTCGAGGCG 
CTGCGGGTGATCTCGCGCAACGCCGACGGCGAGGAGCTGGTGCGCACCACCCGCGCCCTGGTGGTCAGTCCC 
GGCGGCACCCCGCGTATCCCGCAGGTGTTCCGTGCGCTCAAGGGCGACGGCCGGGTGTTCCACCACAGCCAG 
TACCTGGAACACATGGCCAAGCAGCCCTGCAGCAGTGGCAAGCCGATGAAGATCGCCATTATCGGCGGCGGG 
CAGAGCGCGGCGGAGGCCTTCATCGACCTCAACGACAGCTACCCGTCGGTGCAGGCCGACATGATCCTGCGT 
GCCTCGGCGCTCAAGCCGGCGGACGATAGCCCGTTCGTCAACGAAGTGTTCGCGCCGAAGTTCACCGATCTC 
ATCTACAGCCGCGAACATGCCGAACGCGAGCGTTTGCTGCGCGAATACCACAACACCAACTATTCGGTGGTG 
GATACCGACCTGATCGAGCGCATCTACGGCGTCTTCTACCGCCAGAAAGTCTCCGGCATCCCGCGCCACGCC 
TTCCGTTGCATGACCACCGTGGAGCGCGCGACCGCCACCGCCCAGGGCATCGAGCTGGCGTTGCGCGACGCA 
GGTAGCGGCGAGCTAAGCGTAGAGACCTACGACGCAGTGATCCTGGCCACCGGCTATGAGCGTCAGTTGCAC 
CGCCAACTGCTCGAACCGCTGGCGGAGTACCTCGGCGACCACGAGATCGGCCGCGACTACCGCCTGCAGACC 
GACGAGCGCTGCAAGGTGGCGATCTACGCGCAGGGCTTCAGCCAGGCCAGTCATGGCCTCAGCGACACCCTG 
CTGTCGGTGCTGCCGGTGCGTGCCGAGGAAATCTCTGGCTCCCTGTACCAGCACCTGAAGCCCGGTACTGCG 
GCCCGCGCCCTGCACGAGCACGCCCTGGCCAGCTGA