ViewGene

Locus Name:
GeneID:
Location:

GeneID:114
TrivialName: PA14_69070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69070
PAO1 Ortholog Locus:PA5231
Sequence Length:2751
Protein Length:916
Start: 6162045
Stop: 6159295
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08616.1|AE004935_13 (AE004935) probable ATP-binding/permease fusion ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 910/916 (99%), Positives = 911/916 (99%)
Sequence:
ATGACCGCTGGCGGGAGCGGCGTGGCGAGCCTCCGGGGCGTTTCGCTGTGCTACGGCGAGACGCGCGCGGTG
GACGACGTCAGCCTGGAGATCCCGGCCAACCGCATGGTCGGCCTGATCGGTCCGGACGGGGTCGGCAAGTCC
AGCCTGCTGGCGCTGCTGGCCGGCGCACGGAAGATGCAGGATGGCGAGATCCGCGTGCTCGATGGCGACATG
CGCGACCGCCGCCACCGCCGGGCGGTCTGCCCGCGCATCGCCTACATGCCCCAGGGGCTGGGCAAGAACCTC
TACCCGACGCTCTCGGTGTTCGAGAACGTCGACTTCTTCGGTCGGCTGTTCGGCCACGACAAGGCCGAGCGC
GAGCGGCGCATCGCCGATCTGCTGCAAAGCACCGGATTGGCGCCGTTCGCCGAGCGTCCTGCGGGCAAGCTG
TCCGGCGGCATGAAGCAGAAGCTCGGGCTGTGCTGCGCGCTGATCCACGATCCCGACCTGCTGATCCTCGAC
GAGCCGACCACCGGCGTCGACCCGCTGTCGCGCAACCAGTTCTGGGAGCTGATCGGCCGTATCCGCGCGGGC
CGCGAAGGCATGAGCGTGCTGGTCGCCACCGCCTACATGGAGGAAGCCGAGCGCTTCGACTGGCTGGTGGCG
ATGGACGATGGAAAGGTCCTGGCCACCGGTACGCCGCAGGAGTTGCGCGAGCGTACCGGGACGCAGAGCCTC
GAGTCGGCGTTCATCGCCCTGCTGCCGGAAAGCAAGCGCGCCGGCCACCATCGATTGGTGATCCCGCCGCGA
CCGCAGAGCGAAGGCGCGCCGCGGATCGCCATCGAGGCCGAGGGCCTGACCTGTCGTTTCGGCGACTTCGTC
GCGGTCGATCACGTCAGCTTCCGTATCGAGCGTGGGGAAATCTTCGGCTTCCTCGGCTCCAACGGCTGCGGC
AAGTCCACCACCATGAAGATGCTCACCGGCCTGCTGCCGGCCAGCGAAGGCACGTGCGCGCTGTTCGGCCAG
GCGGTGGACGCCAGCGACATGGCGACCCGTCGCCGGGTCGGTTACATGTCCCAGGCCTTCTCCCTGTATGCC
GAGCTGAGCGTGCGGCAGAACCTGGTGCTGCACGCCCGGCTGTTCCACCTGCCGGCGGATGGCATCCCGGCA
CGGGTCGGCGAAATGCTCCGGCGCTTCGACCTGGAGAAGGTGGCCGACGAACTGCCCGACGACCTGCCGCTG
GGCATTCGCCAGCGCCTGTCGCTGGCGGTGGCGGTGATCCACAAGCCGGAGATCCTGATCCTCGACGAGCCC
ACCTCGGGGGTCGATCCGGTGGCTCGCGACGGCTTCTGGGAACTGATGGTCGAGCTGTCGCGCCGCGACGGG
GTGACCATCTTCATTTCCACCCACTTCATGAACGAGGCCCAGCGCTGCGATCGCATCTCGCTGATGCATGCC
GGCAAGGTACTGGCCAGCGATACTCCCGATGAGCTGGTGCGCCAGCGCGGCCTGCCGACCCTGGAGGCGACC
TTCATCGCGTACCTGGAAGAAGCCGCCGGCGCCGCCGCGCCAGCGCAACCGGCCGAGGCGCCGGCCGTCGCG
GAGCAGCCCGGCGATGGCCAGGGGCGCCAGGCGCAACGCGAACGCTTCAGCCCCCTGCGGCTGTTCAGTTAT
GCGCGCCGCGAAGCCATGGAACTGCGCCGCGACCCGATCCGCCTGACCCTGGCCCTGCTCGGCACCGCGCTG
CTGATGTTCATCATCGGCTACGGCATCAACATGGACGTCGAGGACCTCTCCTGGGCGGTCCTCGACCGTGAC
CAGACCACCACCAGCCAGGCCTATGCGCTGAACATCGCCGGCTCGCGCTATTTCGTCGAACATGCGCCGATC
ACCGACCCGGACGACCTCGACCGGCGCCTGCGCAGCGGCGAGCTGAGCCTGGCGGTGGAGATCCCGCCGAAC
TTCGGGCGCGATCTCAAGCGTGGCTCCGATCCGGCCATCGGCGTGTGGATCGACGGAGCGATGCCGACCCGT
GCCAACACCGTGCTCGGCTACGTGCAGGGCCTGCACACCAGCTACCTGGCGGACCTCTCGCGGCAGGTGGGT
GGGGCCGAGGCCAGCGCGGCGGCCAGCACCGAGGTGCGCTATCGCTACAACCCCGACGTGGAAAGCCTGAAG
GCGATGGTGCCGGCGGTGATCCCGCTGCTGCTGATCATGATCCCGGCCATGCTCACCGCCCTCGGCGTGGTG
CGCGAAAAGGAACTGGGCTCGATCACCAACCTCTATGTCACCCCGGTGACGCGCCTGGAGTTCCTGGTCGGC
AAGCAGTTGCCTTACGTCGCCATGGGCATGATCAACTTCCTGCTGATGCTGGTCCTGGCCATCGTGGTATTT
CGCGTGCCGCTCAAGGGCAGCTTCCTGGCGTTGACCATCGGCGCTTTCCTCTATGTGGTCACCAGCACCGGC
CTCGGGCTGTTCCTCTCGACGTTCATGCGCAGCCAGATCGCCGCTGTATTCGGCGTGGCGATCGCCACCATG
ATCCCGGCGATCCAGTTCTCCGGGCTGATCCACCCGGTGTCCTCGCTGGAAGGTGCGGCGGCCTGGATCGGC
AAGCTCTATCCGACCTCGCATTTCCTGGTGGTCAGCCGCGGCGCCTTTTCCAAATCGCTGGGCCTGCCCGAT
CTCTGGGCCTACTACCTGCCGCTTGCCGCTTCCATCGTGGTGCTGACCCTGCTCAGCGTGGCCTGCCTGAAG
AAGCAGGAGGACTGA
Translation:
MTAGGSGVASLRGVSLCYGETRAVDDVSLEIPANRMVGLIGPDGVGKSSLLALLAGARKMQDGEIRVLDGDM
RDRRHRRAVCPRIAYMPQGLGKNLYPTLSVFENVDFFGRLFGHDKAERERRIADLLQSTGLAPFAERPAGKL
SGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRNQFWELIGRIRAGREGMSVLVATAYMEEAERFDWLVA
MDDGKVLATGTPQELRERTGTQSLESAFIALLPESKRAGHHRLVIPPRPQSEGAPRIAIEAEGLTCRFGDFV
AVDHVSFRIERGEIFGFLGSNGCGKSTTMKMLTGLLPASEGTCALFGQAVDASDMATRRRVGYMSQAFSLYA
ELSVRQNLVLHARLFHLPADGIPARVGEMLRRFDLEKVADELPDDLPLGIRQRLSLAVAVIHKPEILILDEP
TSGVDPVARDGFWELMVELSRRDGVTIFISTHFMNEAQRCDRISLMHAGKVLASDTPDELVRQRGLPTLEAT
FIAYLEEAAGAAAPAQPAEAPAVAEQPGDGQGRQAQRERFSPLRLFSYARREAMELRRDPIRLTLALLGTAL
LMFIIGYGINMDVEDLSWAVLDRDQTTTSQAYALNIAGSRYFVEHAPITDPDDLDRRLRSGELSLAVEIPPN
FGRDLKRGSDPAIGVWIDGAMPTRANTVLGYVQGLHTSYLADLSRQVGGAEASAAASTEVRYRYNPDVESLK
AMVPAVIPLLLIMIPAMLTALGVVREKELGSITNLYVTPVTRLEFLVGKQLPYVAMGMINFLLMLVLAIVVF
RVPLKGSFLALTIGAFLYVVTSTGLGLFLSTFMRSQIAAVFGVAIATMIPAIQFSGLIHPVSSLEGAAAWIG
KLYPTSHFLVVSRGAFSKSLGLPDLWAYYLPLAASIVVLTLLSVACLKKQED*
AnnotationID:124GeneID:114
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:17
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding/permease fusion ABC transporter
Cell Localization:()
Synonyms:yhiH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1131,COG1123,COG1129,COG3845,cd00267
Secondary Functional Category(ies):defense mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO71408.1| (AE016847) hypothetical ABC transporter ATP-binding protein
           [Salmonella enterica subsp. enterica serovar Typhi Ty2]
          Length = 913

 Score = 1235 bits (3195), Expect = 0.0
 Identities = 626/911 (68%), Positives = 749/911 (82%), Gaps = 13/911 (1%)

>gb|AAN82722.1|AE016768_140 (AE016768) Hypothetical ABC transporter ATP-binding protein yhiH
           [Escherichia coli CFT073]
          Length = 911

 Score = 1228 bits (3176), Expect = 0.0
 Identities = 629/909 (69%), Positives = 743/909 (81%), Gaps = 11/909 (1%)

>gb|AAP19221.1| (AE016992) putative ATP-binding component of a transport system
           [Shigella flexneri 2a str. 2457T]
          Length = 911

 Score = 1225 bits (3169), Expect = 0.0
 Identities = 628/909 (69%), Positives = 742/909 (81%), Gaps = 11/909 (1%)
Structural Features:
COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
CD-Length = 293 residues,  88.1% aligned
Score =  256 bits (656), Expect = 6e-69
Identities = 111/258 (43%), Positives = 155/258 (60%), Gaps = 2/258 (0%)

COG1123, ATPase components of various ABC-type transport systems, 
contain duplicated ATPase.
CD-Length = 539 residues,  92.4% aligned
Score =  250 bits (639), Expect = 7e-67
Identities = 145/500 (29%), Positives = 234/500 (46%), Gaps = 28/500 (5%)

COG1129, MglA, ABC-type sugar transport system, ATPase component 
[Carbohydrate transport and metabolism]
CD-Length = 500 residues,  98.4% aligned
Score =  219 bits (560), Expect = 1e-57
Identities = 141/513 (27%), Positives = 232/513 (45%), Gaps = 38/513 (7%)

COG3845, ABC-type uncharacterized transport systems, ATPase components.
CD-Length = 501 residues,  97.6% aligned
Score =  185 bits (471), Expect = 2e-47
Identities = 139/510 (27%), Positives = 232/510 (45%), Gaps = 44/510 (8%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues, 100.0% aligned
Score =  171 bits (435), Expect = 3e-43
Identities = 70/218 (32%), Positives = 116/218 (53%), Gaps = 4/218 (1%)
Genomic Context:
Comment:
ReferenceID:231
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17373
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34870
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:114_cdd.html
URL:
Homologs By Global Alignment
Gene ID:114

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
219 PA5231_tr translation of PA5231 916 99.34 99.45 0 4599.0
15722 gb|AAG08616.1|AE004935_13 (AE004935) probable ATP-binding/permease fusion ABC transporter [Pseudomonas aeruginosa PAO1] 916 99.34 99.45 0 4599.0
15726 gb|AAN82722.1|AE016768_140 (AE016768) Hypothetical ABC transporter ATP-binding protein yhiH [Escherichia coli CFT073] 921 68.51 80.89 15 3178.0
15728 gb|AAP19221.1| (AE016992) putative ATP-binding component of a transport system [Shigella flexneri 2a str. 2457T] 921 68.40 80.78 15 3171.0
15729 gb|AAN44961.1|AE015358_3 (AE015358) putative ATP-binding component of a transport system, fragment 1 [Shigella flexneri 2a str. 301] 921 68.40 80.78 15 3171.0
GC ORFID: 43116How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5231Glimmer Score:
Start: 5425732Stop: 5422982
Length: 2751
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5231 translation of PA5231Homolog Bit Score 1776.0
Other Homologs: t_PA5231 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGCTGGCGGGAGCGGCGTGGCGAGCCTCCGGGGCGTTTCGCTGTGCTACGGCGAGACGCGCGCGGTG
GACGACGTCAGCCTGGAGATCCCGGCCAACCGCATGGTCGGCCTGATCGGTCCGGACGGGGTCGGCAAGTCC
AGCCTGCTGGCGCTGCTGGCCGGCGCACGGAAGATGCAGGATGGCGAGATCCGCGTGCTCGATGGCGACATG
CGCGACCGCCGCCACCGCCGGGCGGTCTGCCCGCGCATCGCCTACATGCCCCAGGGGCTGGGCAAGAACCTC
TACCCGACGCTCTCGGTGTTCGAGAACGTCGACTTCTTCGGTCGGCTGTTCGGCCACGACAAGGCCGAGCGC
GAGCGGCGCATCGCCGATCTGCTGCAAAGCACCGGATTGGCGCCGTTCGCCGAGCGTCCTGCGGGCAAGCTG
TCCGGCGGCATGAAGCAGAAGCTCGGGCTGTGCTGCGCGCTGATCCACGATCCCGACCTGCTGATCCTCGAC
GAGCCGACCACCGGCGTCGACCCGCTGTCGCGCAACCAGTTCTGGGAGCTGATCGGCCGTATCCGCGCGGGC
CGCGAAGGCATGAGCGTGCTGGTCGCCACCGCCTACATGGAGGAAGCCGAGCGCTTCGACTGGCTGGTGGCG
ATGGACGATGGAAAGGTCCTGGCCACCGGTACGCCGCAGGAGTTGCGCGAGCGTACCGGGACGCAGAGCCTC
GAGTCGGCGTTCATCGCCCTGCTGCCGGAAAGCAAGCGCGCCGGCCACCATCGATTGGTGATCCCGCCGCGA
CCGCAGAGCGAAGGCGCGCCGCGGATCGCCATCGAGGCCGAGGGCCTGACCTGTCGTTTCGGCGACTTCGTC
GCGGTCGATCACGTCAGCTTCCGTATCGAGCGTGGGGAAATCTTCGGCTTCCTCGGCTCCAACGGCTGCGGC
AAGTCCACCACCATGAAGATGCTCACCGGCCTGCTGCCGGCCAGCGAAGGCACGTGCGCGCTGTTCGGCCAG
GCGGTGGACGCCAGCGACATGGCGACCCGTCGCCGGGTCGGTTACATGTCCCAGGCCTTCTCCCTGTATGCC
GAGCTGAGCGTGCGGCAGAACCTGGTGCTGCACGCCCGGCTGTTCCACCTGCCGGCGGATGGCATCCCGGCA
CGGGTCGGCGAAATGCTCCGGCGCTTCGACCTGGAGAAGGTGGCCGACGAACTGCCCGACGACCTGCCGCTG
GGCATTCGCCAGCGCCTGTCGCTGGCGGTGGCGGTGATCCACAAGCCGGAGATCCTGATCCTCGACGAGCCC
ACCTCGGGGGTCGATCCGGTGGCTCGCGACGGCTTCTGGGAACTGATGGTCGAGCTGTCGCGCCGCGACGGG
GTGACCATCTTCATTTCCACCCACTTCATGAACGAGGCCCAGCGCTGCGATCGCATCTCGCTGATGCATGCC
GGCAAGGTACTGGCCAGCGATACTCCCGATGAGCTGGTGCGCCAGCGCGGCCTGCCGACCCTGGAGGCGACC
TTCATCGCGTACCTGGAAGAAGCCGCCGGCGCCGCCGCGCCAGCGCAACCGGCCGAGGCGCCGGCCGTCGCG
GAGCAGCCCGGCGATGGCCAGGGGCGCCAGGCGCAACGCGAACGCTTCAGCCCCCTGCGGCTGTTCAGTTAT
GCGCGCCGCGAAGCCATGGAACTGCGCCGCGACCCGATCCGCCTGACCCTGGCCCTGCTCGGCACCGCGCTG
CTGATGTTCATCATCGGCTACGGCATCAACATGGACGTCGAGGACCTCTCCTGGGCGGTCCTCGACCGTGAC
CAGACCACCACCAGCCAGGCCTATGCGCTGAACATCGCCGGCTCGCGCTATTTCGTCGAACATGCGCCGATC
ACCGACCCGGACGACCTCGACCGGCGCCTGCGCAGCGGCGAGCTGAGCCTGGCGGTGGAGATCCCGCCGAAC
TTCGGGCGCGATCTCAAGCGTGGCTCCGATCCGGCCATCGGCGTGTGGATCGACGGAGCGATGCCGACCCGT
GCCAACACCGTGCTCGGCTACGTGCAGGGCCTGCACACCAGCTACCTGGCGGACCTCTCGCGGCAGGTGGGT
GGGGCCGAGGCCAGCGCGGCGGCCAGCACCGAGGTGCGCTATCGCTACAACCCCGACGTGGAAAGCCTGAAG
GCGATGGTGCCGGCGGTGATCCCGCTGCTGCTGATCATGATCCCGGCCATGCTCACCGCCCTCGGCGTGGTG
CGCGAAAAGGAACTGGGCTCGATCACCAACCTCTATGTCACCCCGGTGACGCGCCTGGAGTTCCTGGTCGGC
AAGCAGTTGCCTTACGTCGCCATGGGCATGATCAACTTCCTGCTGATGCTGGTCCTGGCCATCGTGGTATTT
CGCGTGCCGCTCAAGGGCAGCTTCCTGGCGTTGACCATCGGCGCTTTCCTCTATGTGGTCACCAGCACCGGC
CTCGGGCTGTTCCTCTCGACGTTCATGCGCAGCCAGATCGCCGCTGTATTCGGCGTGGCGATCGCCACCATG
ATCCCGGCGATCCAGTTCTCCGGGCTGATCCACCCGGTGTCCTCGCTGGAAGGTGCGGCGGCCTGGATCGGC
AAGCTCTATCCGACCTCGCATTTCCTGGTGGTCAGCCGCGGCGCCTTTTCCAAATCGCTGGGCCTGCCCGAT
CTCTGGGCCTACTACCTGCCGCTTGCCGCTTCCATCGTGGTGCTGACCCTGCTCAGCGTGGCCTGCCTGAAG
AAGCAGGAGGACTGA