ViewGene
Locus Name:
GeneID:
Location:

GeneID:1139
TrivialName: PA14_45240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45240
PAO1 Ortholog Locus:PA1485
Sequence Length:1368
Protein Length:455
Start: 4034069
Stop: 4032702
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04874.1|AE004577_9 (AE004577) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 455/455 (100%), Positives = 455/455 (100%)
Sequence:
ATGAGCTCTTCCCCCGCGCCCGAAAGTGCGCTGAAACCCACCCTGGGCGTGTTCGACGTGGTCGCCATCACC
GTTTCCGCGGTCACTCCCGCCAGTTCCGTCTTCGTCATCGCCCCTTTCGCCATCCAGCAGGCCGGCACCGGC
GCTTTCTGGGCCTTCGCCCTGGCCGGGGTGCTGGCGCTGATGTTCGCCTGGTGCTATGCCGAGCTGGGCAGG
GCGCACAGCACCGCCGGCGGCGAGTATGTCTACGCCAAGCGCGTGTTCGGCGGCTTGGCCGGCTACGCCACC
TTCCTCACGGTGCTGGCGATGCTGCTGTTCATCCCGCCGGTGCTCGCCACCGGCGCGGCGACTTACCTGAAC
GCCGCCCTCGGCACCCACTTCGATGCGCAGACCGTGGCCCTGGCGATCGTTGCCTTCAGCTACCTGCTGGGC
ATCCTCAACATCCGCGTCAACGCCTGGGTCACGGGTACCTGCCTGCTGCTGGAAGTGGCGGCGCTGCTGGTG
ATCGTCGGCCTCGGTTTCGGCCATGCACAGCAACCGGCGAGCGTCCTGCTGCAGCCGCAGGTAGTCGGCGAC
GGCGGGCTGCTGGCGATCGCACCCTGGGCATTGGTGATCGGAGCGGTCGGTACCGCGCTGTTCTCCTACAAC
GGTTTCGGCGGCGCGGTGCTGCTCGCCGAGGACATGAAGGACGGCGGCCACAGCGTGCATCGCGCGGTGCTC
TGGTCGCTGGCGCTGGTGGTGCTGATCGAGATCGTCCCGCTCGCCGCGCTGCTGATCGGCGCGCCGTCGCTT
CCGGCGATGCTCGCCAGCCCCGATCCGATCGGCTACCTGTTGAACAGCCATGGCAACGAGACGCTGTCGCGC
CTGGTCAGCGCGGGAATCTTCCTCTCGGTGTTCAACGCCATCGTCGCCATCGTCATCCAGAGCGCCCGGGTG
ATCTTCAGCAGCGGTCGCGACGCGCTCTGGATGCCGGCGTTGAACCGTGCCTTCACCCGTATCCATCCGCGC
TGGGAATCGCCCTGGCTGGCCACGCTGTTCCTCGCCATTCCCTCGGCGGCGCTGAGCTTCAGCTCCAACCTG
GCCGAACTGACCTCGTTCACCGTGTTGCTGATCGTCATGGTCTACCTGATCGTCGCCCTCTGCGCGTTGTTC
AGCCGGGTGCTGCGGCGCGACCGCGAGCATCCCTACCGGATGCCGCTGTGGCCGCTGCCGGCGCTGCTGGCG
GTGAGCGGGGCGGGATACCTGCTGCTCAACCTGTTCCTGGCGGCCTCGGCCAGGGACGTGATGATCATTGTC
GGACTGCTGGCGGTGTCGGTGATTCTCTACTGCACCTACGGCAAGCTCAGTCCGGCGTTCCAGAAGCTTTGA
Translation:
MSSSPAPESALKPTLGVFDVVAITVSAVTPASSVFVIAPFAIQQAGTGAFWAFALAGVLALMFAWCYAELGR
AHSTAGGEYVYAKRVFGGLAGYATFLTVLAMLLFIPPVLATGAATYLNAALGTHFDAQTVALAIVAFSYLLG
ILNIRVNAWVTGTCLLLEVAALLVIVGLGFGHAQQPASVLLQPQVVGDGGLLAIAPWALVIGAVGTALFSYN
GFGGAVLLAEDMKDGGHSVHRAVLWSLALVVLIEIVPLAALLIGAPSLPAMLASPDPIGYLLNSHGNETLSR
LVSAGIFLSVFNAIVAIVIQSARVIFSSGRDALWMPALNRAFTRIHPRWESPWLATLFLAIPSAALSFSSNL
AELTSFTVLLIVMVYLIVALCALFSRVLRRDREHPYRMPLWPLPALLAVSGAGYLLLNLFLAASARDVMIIV
GLLAVSVILYCTYGKLSPAFQKL*
AnnotationID:1148GeneID:1139
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 18:06:55
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid permease
Cell Localization:()
Synonyms:PA1485
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0531,pfam00324
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAB75313.1| (AL939113) putative amino acid transporter [Streptomyces coelicolor
           A3(2)]
          Length = 476

 Score =  258 bits (660), Expect = 4e-68
 Identities = 154/442 (34%), Positives = 243/442 (54%), Gaps = 10/442 (2%)






 
Structural Features:
COG0531, PotE, Amino acid transporters 
[Amino acid transport and metabolism]
CD-Length = 466 residues,  95.7% aligned
Score =  104 bits (261), Expect = 2e-23
Identities = 118/457 (25%), Positives = 209/457 (45%), Gaps = 24/457 (5%)

pfam00324, AA_permease, Amino acid permease.
CD-Length = 473 residues,  90.9% aligned
Score = 66.5 bits (162), Expect = 6e-12
Identities = 85/432 (19%), Positives = 167/432 (38%), Gaps = 26/432 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2281




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19423




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37346




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1139_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1139
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2036
                           PA1485_tr
                           translation of PA1485
                           455
                           99.99
                           99.99
                           0
                           2273.0
     

     
     
68756
                           gb|AAG04874.1|AE004577_9
                           (AE004577) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           455
                           99.99
                           99.99
                           0
                           2273.0
     

     






      

          
GC ORFID: 44141How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1485Glimmer Score: 

          
Start: 919840Stop: 921207

          
Length: 1368


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1485 translation of PA1485Homolog Bit Score 880.0

          
Other Homologs:  t_PA1485 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCTCTTCCCCCGCGCCCGAAAGTGCGCTGAAACCCACCCTGGGCGTGTTCGACGTGGTCGCCATCACC 
GTTTCCGCGGTCACTCCCGCCAGTTCCGTCTTCGTCATCGCCCCTTTCGCCATCCAGCAGGCCGGCACCGGC 
GCTTTCTGGGCCTTCGCCCTGGCCGGGGTGCTGGCGCTGATGTTCGCCTGGTGCTATGCCGAGCTGGGCAGG 
GCGCACAGCACCGCCGGCGGCGAGTATGTCTACGCCAAGCGCGTGTTCGGCGGCTTGGCCGGCTACGCCACC 
TTCCTCACGGTGCTGGCGATGCTGCTGTTCATCCCGCCGGTGCTCGCCACCGGCGCGGCGACTTACCTGAAC 
GCCGCCCTCGGCACCCACTTCGATGCGCAGACCGTGGCCCTGGCGATCGTTGCCTTCAGCTACCTGCTGGGC 
ATCCTCAACATCCGCGTCAACGCCTGGGTCACGGGTACCTGCCTGCTGCTGGAAGTGGCGGCGCTGCTGGTG 
ATCGTCGGCCTCGGTTTCGGCCATGCACAGCAACCGGCGAGCGTCCTGCTGCAGCCGCAGGTAGTCGGCGAC 
GGCGGGCTGCTGGCGATCGCACCCTGGGCATTGGTGATCGGAGCGGTCGGTACCGCGCTGTTCTCCTACAAC 
GGTTTCGGCGGCGCGGTGCTGCTCGCCGAGGACATGAAGGACGGCGGCCACAGCGTGCATCGCGCGGTGCTC 
TGGTCGCTGGCGCTGGTGGTGCTGATCGAGATCGTCCCGCTCGCCGCGCTGCTGATCGGCGCGCCGTCGCTT 
CCGGCGATGCTCGCCAGCCCCGATCCGATCGGCTACCTGTTGAACAGCCATGGCAACGAGACGCTGTCGCGC 
CTGGTCAGCGCGGGAATCTTCCTCTCGGTGTTCAACGCCATCGTCGCCATCGTCATCCAGAGCGCCCGGGTG 
ATCTTCAGCAGCGGTCGCGACGCGCTCTGGATGCCGGCGTTGAACCGTGCCTTCACCCGTATCCATCCGCGC 
TGGGAATCGCCCTGGCTGGCCACGCTGTTCCTCGCCATTCCCTCGGCGGCGCTGAGCTTCAGCTCCAACCTG 
GCCGAACTGACCTCGTTCACCGTGTTGCTGATCGTCATGGTCTACCTGATCGTCGCCCTCTGCGCGTTGTTC 
AGCCGGGTGCTGCGGCGCGACCGCGAGCATCCCTACCGGATGCCGCTGTGGCCGCTGCCGGCGCTGCTGGCG 
GTGAGCGGGGCGGGATACCTGCTGCTCAACCTGTTCCTGGCGGCCTCGGCCAGGGACGTGATGATCATTGTC 
GGACTGCTGGCGGTGTCGGTGATTCTCTACTGCACCTACGGCAAGCTCAGTCCGGCGTTCCAGAAGCTTTGA