ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1138

TrivialName: PA14_02830

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_02830

PAO1 Ortholog Locus: PA0230

Sequence Length: 1380

Protein Length: 459

Start: 249935

Stop: 251314

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03619.1|AE004461_2 (AE004461) 3-carboxy-cis,cis-muconate cycloisomerase [Pseudomonas aeruginosa PAO1] Identities = 454/459 (98%), Positives = 456/459 (99%)

Sequence:

ATGAGCGACGTACCCGCCAACCAGTTGTTCGATGCCTATTTCACGGCGGCGCCGATGCGCGCGGTGTTCTCC
GACCGCGGCCGCCTGCAAGGCATGCTCGACTTCGAGGCCGCCCTGGCTCGCGCCGAGGCGCGCACCGGGGTG
GTTCCCGCGACGGCGGTGGCGCCGATCGAGTCGGCCTGCCGCGCCGAACTGTACGACCCGCTGGCGCTGGCC
GAGGCGGTCGCCACTGCCGGCAACTCGGCGATCCCGCTGGTCAAGGCGCTGGGCCGCCAGGTGGCGGCTGGC
GACGCCGCGGCCGAGCGCTACGTGCATCTCGGCGCCACCAGCCAGGACGCCATGGACAGCGGCCTGGTGCTG
CAACTGCGCCGCGCGCTGGCCTTGCTCGAGCAGGATCTGCAACGTCTTGCCGAGGTCCTGGCGGACCAGGCC
GAACGGCATGCCGACACGCCGCTGGCCGGGCGCACCTGGTTGCAGCACGCCACCCCGGTGACCCTGGGCATG
AAGCTCGCCGGCCTGCTCGGCGCCTTGACCCGGCACCGCCAGCGCCTGCGCGAGTTGCGCCCGCGCCTGCTG
GTGCTGCAATTCGGCGGCGCCTCGGGGACGCTCGCCGCGCTCGACGAACAGGCCCTGCCGGTGGCCGCGGCG
CTGGCCGAGGAGCTGGGCCTGGCTTTGCCCGAACAACCCTGGCACACCCAGCGTGACCGCCTGGTGGAGTTC
GCCAGCGTGCTCGGCCTGGTGGCCGGTAGCCTCGGCAAGTTCGGTCGCGATGTCAGCCTGCTGATGCAGACC
GAGGCCGGCGAGGTCTTCGAGCCGGCCGGCGCCGGGCGCGGCGGTTCCTCGACCATGCCGCACAAGCGCAAC
CCGGTGAGCAGCGCGGTGCTGATCGCCGCCGCCACCCGTGCGCCGGGGcTGGTCTCGACCCTGTTCGCGGCG
ATGCCGCAGGAACACGAGCGCAGCCTCGGTCTCTGGCACGCCGAGTGGGAAACCCTGCCGGAACTCTGTTGC
CTGGTTTCCGGCGCGCTGCAACAGGCGATCGGCctgCtCGAAGGcctgGAGGTGGACGCCCAGCGGATGCGC
CGCAACctTGGcctGACCCACGGCCTGGTGCTCGCCGAGGCGGTGAGCATCGCCCTGGCCCGTCGTATCGGC
CGCGAAGCCGCGCACCATCTGGTGGAACAGTGCTGCCGCCGCGCCGTCGAGCAGCGCCGCGAGTTGCGCGCG
GTGCTCGGCGAAGAGGCGCGGGTGAGCGCCGAGTTGTCCGGCGACGAACTGGACCGCCTGCTCGATCCCGCC
CATTACCTCGGCCAGGCCCGCGCCTGGGTCGAGCGCGCGCTCGCCGAACACCATGCCCTGGGCTTCGAACCC
CATCCCGCCTGA

Translation:

MSDVPANQLFDAYFTAAPMRAVFSDRGRLQGMLDFEAALARAEARTGVVPATAVAPIESACRAELYDPLALA
EAVATAGNSAIPLVKALGRQVAAGDAAAERYVHLGATSQDAMDSGLVLQLRRALALLEQDLQRLAEVLADQA
ERHADTPLAGRTWLQHATPVTLGMKLAGLLGALTRHRQRLRELRPRLLVLQFGGASGTLAALDEQALPVAAA
LAEELGLALPEQPWHTQRDRLVEFASVLGLVAGSLGKFGRDVSLLMQTEAGEVFEPAGAGRGGSSTMPHKRN
PVSSAVLIAAATRAPGLVSTLFAAMPQEHERSLGLWHAEWETLPELCCLVSGALQQAIGLLEGLEVDAQRMR
RNLGLTHGLVLAEAVSIALARRIGREAAHHLVEQCCRRAVEQRRELRAVLGEEARVSAELSGDELDRLLDPA
HYLGQARAWVERALAEHHALGFEPHPA*

AnnotationID:1147 GeneID:1138

AnnotatorUID: danlee

Modification Date/Time: 2004-02-05 18:06:54

Gene Name: pcaB

Confidence Code: 2

GeneProduct: 3-carboxy-cis,cis-muconate cycloisomerase

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (5) Carbon compound catabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0015

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2279

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17038

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

NCBI - Conserved Domain Search (BLASTP).

Reference Type: Blast (text/plain)

Data: PA0230_CDS.cgi

URL:

ReferenceID:19421

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1138

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2035 PA0230_tr translation of PA0230 459 98.91 99.34 0 2276.0

68736 gb|AAG03619.1|AE004461_2 (AE004461) 3-carboxy-cis,cis-muconate cycloisomerase [Pseudomonas aeruginosa PAO1] 459 98.91 99.34 0 2276.0

68737 gb|AAD39559.1| (AF031417) PcaB-like protein [Pseudomonas putida] 459 77.12 86.71 9 1805.0

68738 gb|AAN67002.1|AE016328_7 (AE016779) 3-carboxy-cis,cis-muconate cycloisomerase [Pseudomonas putida KT2440] 459 77.12 86.49 9 1804.0

68739 gb|AAO55853.1| (AE016864) 3-carboxy-cis,cis-muconate cycloisomerase [Pseudomonas syringae pv. tomato str. DC3000] 459 73.85 85.18 6 1740.0

GC ORFID: `44140`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0230`	Glimmer Score:
Start: `6051276`	Stop: `6052655`
Length: `1380`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0230 translation of PA0230`	Homolog Bit Score `881.0`
Other Homologs: `psyr_15may02_Scaffold1_revised_gene1097 (ORF: BLASTX 666.0), t_PA0230 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCGACGTACCCGCCAACCAGTTGTTCGATGCCTATTTCACGGCGGCGCCGATGCGCGCGGTGTTCTCC GACCGCGGCCGCCTGCAAGGCATGCTCGACTTCGAGGCCGCCCTGGCTCGCGCCGAGGCGCGCACCGGGGTG GTTCCCGCGACGGCGGTGGCGCCGATCGAGTCGGCCTGCCGCGCCGAACTGTACGACCCGCTGGCGCTGGCC GAGGCGGTCGCCACTGCCGGCAACTCGGCGATCCCGCTGGTCAAGGCGCTGGGCCGCCAGGTGGCGGCTGGC GACGCCGCGGCCGAGCGCTACGTGCATCTCGGCGCCACCAGCCAGGACGCCATGGACAGCGGCCTGGTGCTG CAACTGCGCCGCGCGCTGGCCTTGCTCGAGCAGGATCTGCAACGTCTTGCCGAGGTCCTGGCGGACCAGGCC GAACGGCATGCCGACACGCCGCTGGCCGGGCGCACCTGGTTGCAGCACGCCACCCCGGTGACCCTGGGCATG AAGCTCGCCGGCCTGCTCGGCGCCTTGACCCGGCACCGCCAGCGCCTGCGCGAGTTGCGCCCGCGCCTGCTG GTGCTGCAATTCGGCGGCGCCTCGGGGACGCTCGCCGCGCTCGACGAACAGGCCCTGCCGGTGGCCGCGGCG CTGGCCGAGGAGCTGGGCCTGGCTTTGCCCGAACAACCCTGGCACACCCAGCGTGACCGCCTGGTGGAGTTC GCCAGCGTGCTCGGCCTGGTGGCCGGTAGCCTCGGCAAGTTCGGTCGCGATGTCAGCCTGCTGATGCAGACC GAGGCCGGCGAGGTCTTCGAGCCGGCCGGCGCCGGGCGCGGCGGTTCCTCGACCATGCCGCACAAGCGCAAC CCGGTGAGCAGCGCGGTGCTGATCGCCGCCGCCACCCGTGCGCCGGGGcTGGTCTCGACCCTGTTCGCGGCG ATGCCGCAGGAACACGAGCGCAGCCTCGGTCTCTGGCACGCCGAGTGGGAAACCCTGCCGGAACTCTGTTGC CTGGTTTCCGGCGCGCTGCAACAGGCGATCGGCctgCtCGAAGGcctgGAGGTGGACGCCCAGCGGATGCGC CGCAACctTGGcctGACCCACGGCCTGGTGCTCGCCGAGGCGGTGAGCATCGCCCTGGCCCGTCGTATCGGC CGCGAAGCCGCGCACCATCTGGTGGAACAGTGCTGCCGCCGCGCCGTCGAGCAGCGCCGCGAGTTGCGCGCG GTGCTCGGCGAAGAGGCGCGGGTGAGCGCCGAGTTGTCCGGCGACGAACTGGACCGCCTGCTCGATCCCGCC CATTACCTCGGCCAGGCCCGCGCCTGGGTCGAGCGCGCGCTCGCCGAACACCATGCCCTGGGCTTCGAACCC CATCCCGCCTGA