ViewGene

Locus Name:
GeneID:
Location:

GeneID:1136
TrivialName: PA14_05740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05740
PAO1 Ortholog Locus:PA0439
Sequence Length:1278
Protein Length:425
Start: 508108
Stop: 506831
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03828.1|AE004481_4 (AE004481) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 424/425 (99%), Positives = 424/425 (99%)
Sequence:
GTGATGGCCGACCTGTCTATCGAATTCGCCGGCATCAAGTCGCCCAACCCCTTCTGGCTGGCCTCCGCGCCG
CCCACCGACAAGGCCTACAACGTGGTCCGCGCCTACCAGGCGGGCTGGGGCGGGGTGGTCTGGAAGACCCTC
GGCGAAGACCCCGCGGCGGTCAACGTGTCGTCGCGTTATTCCGCGCACTTCGGACCGAACCGCCAGGTGCAG
GGGATCAACAACATCGAGCTGATCACCGACCGCTCGCTGGAGATCAACCTGCGCGAGATCGCCCAGGTGAAG
AAGGACTGGCCAGACCGCGCGCTGATCGTGTCGCTGATGGTGCCCTGCGTCGAGGAGTCGTGGAAATACATC
CTGCCGCTGGTGGAAGCCACCGGCGCCGACGGTATCGAGCTGAACTTCGGTTGCCCCCACGGCATGCCCGAG
CGCGGCATGGGCGCGGCGGTGGGCCAGGTACCGGAGTACGTGGAGATGGTCACCCGCTGGTGCAAGACCCAC
TGCTCGCTGCCGGTGATCGTCAAGCTCACCCCCAACATCACCGACATCCGCCAGTCGGCGCGCGCCGCCCAT
CGCGGCGGCGCCGACGCGGTGTCGCTGATCAACACCATCAACTCGATCACCAGCGTCGACCTGGAGCGCATG
GTCGCCCTGCCCGTGGTCGGCACCCAGAGCACCCACGGCGGCTACTGCGGCTCGGCGGTGAAGCCGATCGCC
CTGAACATGGTCGCCGAGATCGCCCGCGACCCGCAGACCCGCGGCCTGCCGATCTGTGGCATCGGCGGTATC
GGCAGTTGGCGCGACGCAGCGGAATTCGTCGCGCTCGGCTGCGGCGCGGTGCAGGTATGCACGGCGGCGATG
CTGCACGGCTTCCGTATCGTCGAGGACATGCAGGACGGTCTCGCGCGCTGGATGGACAGCCATGGCTACCAG
CGGCTGTCCGATTTCAGCGGCGGCGCGGTGGGCAATACCACCGACTGGAAGTACCTGGACATCAACTACCAG
GTGATCGCCCGCATCGACCAGGACGCCTGCATCGGTTGCGGCCGCTGCCATATCGCCTGCGAGGACACCTCG
CACCAGGCCATCGCCAGCCTGCCCCGGGCCGACGGTACGCACCGCTACGAAGTGATCGACGCCGAGTGCGTG
GGCTGCAACCTGTGCCAGATCACCTGTCCGGTGGAGAACTGCATCGAAATGGTGCCGCAGGACACCGGCAAG
CCCTATCTCAACTGGACCCAGGATCCGCGCAACCCCTACCGCGAAGCCTCCTGA
Translation:
MMADLSIEFAGIKSPNPFWLASAPPTDKAYNVVRAYQAGWGGVVWKTLGEDPAAVNVSSRYSAHFGPNRQVQ
GINNIELITDRSLEINLREIAQVKKDWPDRALIVSLMVPCVEESWKYILPLVEATGADGIELNFGCPHGMPE
RGMGAAVGQVPEYVEMVTRWCKTHCSLPVIVKLTPNITDIRQSARAAHRGGADAVSLINTINSITSVDLERM
VALPVVGTQSTHGGYCGSAVKPIALNMVAEIARDPQTRGLPICGIGGIGSWRDAAEFVALGCGAVQVCTAAM
LHGFRIVEDMQDGLARWMDSHGYQRLSDFSGGAVGNTTDWKYLDINYQVIARIDQDACIGCGRCHIACEDTS
HQAIASLPRADGTHRYEVIDAECVGCNLCQITCPVENCIEMVPQDTGKPYLNWTQDPRNPYREAS*
AnnotationID:1145GeneID:1136
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 12:12:05
Gene Name:
Confidence Code:3
GeneProduct:putative dihydroorotate dehydrogenase
Cell Localization:()
Synonyms:pydA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0167,pfam01180
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69629.1|AE016596_7 (AE016789) dihydroorotate dehydrogenase family protein [Pseudomonas
           putida KT2440]
          Length = 424

 Score =  806 bits (2081), Expect = 0.0
 Identities = 382/424 (90%), Positives = 403/424 (95%)

>dbj|BAB48969.1| (AP002997) probable oxidoreductase [Mesorhizobium loti]
          Length = 437

 Score =  615 bits (1586), Expect = e-175
 Identities = 301/432 (69%), Positives = 339/432 (78%), Gaps = 15/432 (3%)

>gb|AAN29231.1|AE014340_9 (AE014340) dihydroorotate dehydrogenase family protein [Brucella
           suis 1330]
          Length = 436

 Score =  602 bits (1551), Expect = e-171
 Identities = 298/430 (69%), Positives = 336/430 (78%), Gaps = 13/430 (3%)
Structural Features:
COG0167, PyrD, Dihydroorotate dehydrogenase 
[Nucleotide transport and metabolism]
CD-Length = 310 residues, 100.0% aligned
Score =  301 bits (772), Expect = 1e-82
Identities = 113/322 (35%), Positives = 153/322 (47%), Gaps = 13/322 (4%)

pfam01180, DHO_dh, Dihydroorotate dehydrogenase.
CD-Length = 293 residues,  99.7% aligned
Score =  112 bits (281), Expect = 1e-25
Genomic Context:
Comment:
ReferenceID:14289
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19417
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33761
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1136_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1136

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2033 PA0439_tr translation of PA0439 425 99.76 99.76 0 2280.0
68721 gb|AAG03828.1|AE004481_4 (AE004481) probable oxidoreductase [Pseudomonas aeruginosa PAO1] 425 99.52 99.76 0 2277.0
68722 gb|AAN69629.1|AE016596_7 (AE016789) dihydroorotate dehydrogenase family protein [Pseudomonas putida KT2440] 425 89.88 94.82 1 2081.0
68723 dbj|BAB48969.1| (AP002997) probable oxidoreductase [Mesorhizobium loti] 440 68.40 77.50 18 1601.0
68724 gb|AAN29231.1|AE014340_9 (AE014340) dihydroorotate dehydrogenase family protein [Brucella suis 1330] 439 68.33 77.44 17 1565.0
GC ORFID: 44138How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0439Glimmer Score:
Start: 6309450Stop: 6308173
Length: 1278
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0439 translation of PA0439Homolog Bit Score 882.0
Other Homologs: t_PA0439 (ORF: GLIMMER)
GC ORF Sequence
GTGATGGCCGACCTGTCTATCGAATTCGCCGGCATCAAGTCGCCCAACCCCTTCTGGCTGGCCTCCGCGCCG
CCCACCGACAAGGCCTACAACGTGGTCCGCGCCTACCAGGCGGGCTGGGGCGGGGTGGTCTGGAAGACCCTC
GGCGAAGACCCCGCGGCGGTCAACGTGTCGTCGCGTTATTCCGCGCACTTCGGACCGAACCGCCAGGTGCAG
GGGATCAACAACATCGAGCTGATCACCGACCGCTCGCTGGAGATCAACCTGCGCGAGATCGCCCAGGTGAAG
AAGGACTGGCCAGACCGCGCGCTGATCGTGTCGCTGATGGTGCCCTGCGTCGAGGAGTCGTGGAAATACATC
CTGCCGCTGGTGGAAGCCACCGGCGCCGACGGTATCGAGCTGAACTTCGGTTGCCCCCACGGCATGCCCGAG
CGCGGCATGGGCGCGGCGGTGGGCCAGGTACCGGAGTACGTGGAGATGGTCACCCGCTGGTGCAAGACCCAC
TGCTCGCTGCCGGTGATCGTCAAGCTCACCCCCAACATCACCGACATCCGCCAGTCGGCGCGCGCCGCCCAT
CGCGGCGGCGCCGACGCGGTGTCGCTGATCAACACCATCAACTCGATCACCAGCGTCGACCTGGAGCGCATG
GTCGCCCTGCCCGTGGTCGGCACCCAGAGCACCCACGGCGGCTACTGCGGCTCGGCGGTGAAGCCGATCGCC
CTGAACATGGTCGCCGAGATCGCCCGCGACCCGCAGACCCGCGGCCTGCCGATCTGTGGCATCGGCGGTATC
GGCAGTTGGCGCGACGCAGCGGAATTCGTCGCGCTCGGCTGCGGCGCGGTGCAGGTATGCACGGCGGCGATG
CTGCACGGCTTCCGTATCGTCGAGGACATGCAGGACGGTCTCGCGCGCTGGATGGACAGCCATGGCTACCAG
CGGCTGTCCGATTTCAGCGGCGGCGCGGTGGGCAATACCACCGACTGGAAGTACCTGGACATCAACTACCAG
GTGATCGCCCGCATCGACCAGGACGCCTGCATCGGTTGCGGCCGCTGCCATATCGCCTGCGAGGACACCTCG
CACCAGGCCATCGCCAGCCTGCCCCGGGCCGACGGTACGCACCGCTACGAAGTGATCGACGCCGAGTGCGTG
GGCTGCAACCTGTGCCAGATCACCTGTCCGGTGGAGAACTGCATCGAAATGGTGCCGCAGGACACCGGCAAG
CCCTATCTCAACTGGACCCAGGATCCGCGCAACCCCTACCGCGAAGCCTCCTGA