ViewGene
Locus Name:
GeneID:
Location:

GeneID:1135
TrivialName: PA14_06080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06080
PAO1 Ortholog Locus:PA0465
Sequence Length:1359
Protein Length:452
Start: 538283
Stop: 539641
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03854.1|AE004484_6 (AE004484) inner membrane protein CreD [Pseudomonas aeruginosa PAO1]
Identities = 448/452 (99%), Positives = 449/452 (99%)
Sequence:
ATGAACCGCACGCTGGCCTACAAGCTCGGCGCCATCGCCCTACTCATCCTGCTATTGCTGATTCCCCTGTTG
ATGATCGACGGCCTGATCCGCGATCGCCAGGAGGTTCGTGACGGCGTGCTGCAGGATATCGCCCGCAGCTCC
AGCTACAGCCAGCGCCTCACCGGCCCGCTGCTGGTGGTGCCGTACCGCAGGACGGTGCGCGAGTGGGTCACC
GAGGAGAAGACCGAGAAGCGCGTGTTGCAGGAGCGCGAGCAGCGCGGCGAGCTGTACTTCCTGCCCGACCGC
TTCGCCCTCGACGGGCAGATGCGCACCGAGCTGCGCTACCGTGGCATCTACCAGGCGCGCCTGTACCACGTC
GACAACAAGGTTGCCGGCTACTTCCAGGTGCCTGCGCACTATGGCATCGAAGAAGACTTGGAGGACTACCAG
TTCGAAACGCCGTTCCTGGCGATGGGCATCAGCGACATCCGCGGCATCGAGAATGCCCTGCGCCTGTCCCTC
AACGGTGCCAGCGTCGACTTCGAGCCGGGTAGCCGGGTCGGCCTGCTCGGCAGCGGTGTGCACGCACCGCTG
CAAGGCGTCGACGGGCGCCAGGCGCAGCGCCTGGAGTACGCCTTCGACCTGTCGTTGCTCGGCAGCGAGCGG
CTGGACATCGTGCCGGTGGGCCGCGACAGCCAGGTCATCCTGAAGGCCGACTGGCCGCACCCGAGCTTCGGC
GGCGAGTTCCTGCCCAGCGAGCGGGAGATCACCGCCCAGGGCTTCACCGCGCGCTGGCAGACCAGCTTCTTC
GCCACCAACATGGAAGAGGCGCTGCGCAGTTGCGTGGAGGAGCAGCGCTGCGACGGTTTCCAGGCGCGCGCC
TTCGGCGTCGGCCTGGTCGATCCGGTGGACCAGTACCTGAAGGCCGACCGCGCGATCAAGTACGCGCTGCTG
TTCATCACCCTGACCTTCGCCGGCTTCTTCCTCTTCGAGGTGCTCAAGCGCCTGGCGGTACACCCGATCCAG
TACGCGCTGGTCGGCCTGGCGCTGGCGTTCTTCTACCTGCTGCTGCTGTCGCTGGCCGAGCATGTCGGCTTC
GAGCTGGCCTACCTGGTCTCCGCCGGAGCCTGCGTCGGCCTGATCGGCTTCTACCTGTGCTTCGTCCTGCGC
AGCGTGGCCCGAGGACTGGGCTTCAGCGCCGGCCTGGCAGGGCTGTACGGCCTGCTCTACGGCTTGCTGAGC
GCGGAGGACTACGCCTTGCTGATGGGCTCGCTGCTGCTGTTCGCGGTGCTTGCCGCGGTGATGGTGCTGACC
CGCCGCCTGGACTGGTACGGGGTCGGCCGCAAGGACCTCCCGGCGGTGCCCGACAGGGCCTGA
Translation:
MNRTLAYKLGAIALLILLLLIPLLMIDGLIRDRQEVRDGVLQDIARSSSYSQRLTGPLLVVPYRRTVREWVT
EEKTEKRVLQEREQRGELYFLPDRFALDGQMRTELRYRGIYQARLYHVDNKVAGYFQVPAHYGIEEDLEDYQ
FETPFLAMGISDIRGIENALRLSLNGASVDFEPGSRVGLLGSGVHAPLQGVDGRQAQRLEYAFDLSLLGSER
LDIVPVGRDSQVILKADWPHPSFGGEFLPSEREITAQGFTARWQTSFFATNMEEALRSCVEEQRCDGFQARA
FGVGLVDPVDQYLKADRAIKYALLFITLTFAGFFLFEVLKRLAVHPIQYALVGLALAFFYLLLLSLAEHVGF
ELAYLVSAGACVGLIGFYLCFVLRSVARGLGFSAGLAGLYGLLYGLLSAEDYALLMGSLLLFAVLAAVMVLT
RRLDWYGVGRKDLPAVPDRA*
AnnotationID:1144GeneID:1135
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 08:08:05
Gene Name:creD
Confidence Code:2
GeneProduct:inner membrane protein CreD
Cell Localization:()
Synonyms:blrD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06123
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam06123, CreD, Inner membrane protein CreD. 
CD-Length = 432 residues,  99.8% aligned
Score =  562 bits (1451), Expect = 2e-161
Identities = 243/440 (55%), Positives = 306/440 (69%), Gaps = 10/440 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2273




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19415




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33793




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1135_cdd.html


    		




 
URL:

















    ReferenceID:35338




  
Author/Investigator(s):
        Avison MB, Horton RE, Walsh TR, Bennett PM.





  
Title:
        Escherichia coli CreBC is a global regulator of gene expression that responds to growth in minimal media.




  
PubMed:
        11350954


MedLine:
        




    
Source:
J Biol Chem. 2001 Jul 20;276(29):26955-61. Epub 2001 May 11.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11350954









           
Homologs By Global Alignment 

           

       



     
Gene ID:1135
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2032
                           PA0465_tr
                           translation of PA0465
                           452
                           99.11
                           99.33
                           0
                           2280.0
     

     
     
68713
                           gb|AAG03854.1|AE004484_6
                           (AE004484) inner membrane protein CreD [Pseudomonas aeruginosa PAO1]
                           452
                           99.11
                           99.33
                           0
                           2280.0
     

     
     
68714
                           emb|CAC01290.1|
                           (AJ276632) putative inner membrane protein [Aeromonas hydrophila]
                           476
                           42.64
                           58.40
                           51
                           880.0
     

     
     
68715
                           gb|AAM37697.1|
                           (AE011926) inner membrane protein [Xanthomonas axonopodis pv. citri str. 306]
                           473
                           41.22
                           56.87
                           55
                           836.0
     

     
     
68717
                           gb|AAM41964.1|
                           (AE012381) inner membrane protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           470
                           40.85
                           56.17
                           49
                           824.0
     

     






      

          
GC ORFID: 44137How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0465Glimmer Score: 

          
Start: 6339625Stop: 6340983

          
Length: 1359


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0465 translation of PA0465Homolog Bit Score 882.0

          
Other Homologs:  t_PA0465 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCGCACGCTGGCCTACAAGCTCGGCGCCATCGCCCTACTCATCCTGCTATTGCTGATTCCCCTGTTG 
ATGATCGACGGCCTGATCCGCGATCGCCAGGAGGTTCGTGACGGCGTGCTGCAGGATATCGCCCGCAGCTCC 
AGCTACAGCCAGCGCCTCACCGGCCCGCTGCTGGTGGTGCCGTACCGCAGGACGGTGCGCGAGTGGGTCACC 
GAGGAGAAGACCGAGAAGCGCGTGTTGCAGGAGCGCGAGCAGCGCGGCGAGCTGTACTTCCTGCCCGACCGC 
TTCGCCCTCGACGGGCAGATGCGCACCGAGCTGCGCTACCGTGGCATCTACCAGGCGCGCCTGTACCACGTC 
GACAACAAGGTTGCCGGCTACTTCCAGGTGCCTGCGCACTATGGCATCGAAGAAGACTTGGAGGACTACCAG 
TTCGAAACGCCGTTCCTGGCGATGGGCATCAGCGACATCCGCGGCATCGAGAATGCCCTGCGCCTGTCCCTC 
AACGGTGCCAGCGTCGACTTCGAGCCGGGTAGCCGGGTCGGCCTGCTCGGCAGCGGTGTGCACGCACCGCTG 
CAAGGCGTCGACGGGCGCCAGGCGCAGCGCCTGGAGTACGCCTTCGACCTGTCGTTGCTCGGCAGCGAGCGG 
CTGGACATCGTGCCGGTGGGCCGCGACAGCCAGGTCATCCTGAAGGCCGACTGGCCGCACCCGAGCTTCGGC 
GGCGAGTTCCTGCCCAGCGAGCGGGAGATCACCGCCCAGGGCTTCACCGCGCGCTGGCAGACCAGCTTCTTC 
GCCACCAACATGGAAGAGGCGCTGCGCAGTTGCGTGGAGGAGCAGCGCTGCGACGGTTTCCAGGCGCGCGCC 
TTCGGCGTCGGCCTGGTCGATCCGGTGGACCAGTACCTGAAGGCCGACCGCGCGATCAAGTACGCGCTGCTG 
TTCATCACCCTGACCTTCGCCGGCTTCTTCCTCTTCGAGGTGCTCAAGCGCCTGGCGGTACACCCGATCCAG 
TACGCGCTGGTCGGCCTGGCGCTGGCGTTCTTCTACCTGCTGCTGCTGTCGCTGGCCGAGCATGTCGGCTTC 
GAGCTGGCCTACCTGGTCTCCGCCGGAGCCTGCGTCGGCCTGATCGGCTTCTACCTGTGCTTCGTCCTGCGC 
AGCGTGGCCCGAGGACTGGGCTTCAGCGCCGGCCTGGCAGGGCTGTACGGCCTGCTCTACGGCTTGCTGAGC 
GCGGAGGACTACGCCTTGCTGATGGGCTCGCTGCTGCTGTTCGCGGTGCTTGCCGCGGTGATGGTGCTGACC 
CGCCGCCTGGACTGGTACGGGGTCGGCCGCAAGGACCTCCCGGCGGTGCCCGACAGGGCCTGA