ViewGene

Locus Name:
GeneID:
Location:

GeneID:1134
TrivialName: PA14_70770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70770
PAO1 Ortholog Locus:PA5362
Sequence Length:1341
Protein Length:446
Start: 6301894
Stop: 6303234
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08747.1|AE004948_3 (AE004948) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 445/446 (99%), Positives = 445/446 (99%)
Sequence:
ATGGACCCTTCTCCTAGTACCAGCATCGCCACCTATTTCGCCGATGCCGGCCTGATCCTCTTTGCGCTTTTC
CTCGTCCTGCTCAACGGCTTCTTCGTCGCCGCCGAGTTCGCCATGGTCAAGCTCCGCGCCACCCGCGTGGAA
ACCATCGCCAAGCAGCACGGCTGGCGCGGCGCCATCCTGCGCAAGGTACACAACCAGCTGGACGCCTACCTG
TCCGCCTGCCAGTTGGGCATCACCCTGGCCTCCCTGGGCCTGGGCTGGGTCGGCGAGCCGGCCTTCGCCGAA
CTCCTGGAACCGCTGCTGGCGATGATCGGCGTGCATTCCGACGAACTGATCCGCGGGATCTCCTTCTTCACC
GCGTTCTTCATCATTTCCTACCTGCACATCGTGGTCGGCGAGCTGGCGCCCAAGTCCTGGGCGATCCGCAAG
CCGGAACTGCTGTCGCTGTGGACGGCGGTGCCGCTGTACCTCTTCTACTGGCTGATGTACCCGGCGATCTGG
CTGCTCAACGCCAGCGCCAACGCCATCCTCAAGATCGCCGGCCAGGGCGAGCCCGGCCCGCACCACGAGCAT
CACTACAGCCGCGACGAACTGAAGCTGATTCTCCACTCCAGCCGCGCCCAGGACCCCAGCGACCAGGGCATG
CGCGTGCTGGCCTCGGCGGTGGAGCTGGGCGAGCTGGAGGTGGTCGACTGGGCCAACTCCCGCGAAGACCTG
GTCTACCTCGAGCACGACGCGCCGCTGGCGGACATCCTCGCGGTGATCCGCCGCCACAAGTACAGCCGCTAC
CCGGTCTGGGACAGCCACAAGGGCGAGTTCATCGGCCTGCTGCACATCAAGGACCTGCTGCTGGCACTGTCC
GCCCTGGACAGCCTGCCGGAGACCTTCGACCTCGACGAACTGGTGCGCCCGCTGGAGATCGTCACCAAGCAC
ACCCCGCTGTCGCGCCTGCTGGAGCAGTTCCGCAAGGGCGGCGCGCACTTCGCCGTGGTGGAAGAGGCCGAT
CACAAGGTGGTCGGCTTCCTGACCATGGAGGACGTGCTGGAAGTGCTGGTCGGCGACATCCAGGACGAACAC
CGCAAGACCGAGCGCGGCATCCTCGCCTACCAGCCGGGCAAGCTGCTGGTGCGCGGCGACACACCGCTGTTC
AAGCTCGAGCGCCTGCTCGGCATCGACCTCGATCATGTCGAGGCGGACACTCTCGCCGGGCTGGTCTACGAC
ACCCTGAAGCGGGTGCCGGAGGAAGAGGAAGTCCTCGACACCGAGGGCCTGCGGATCATCGTGAAGAAGATG
CGCGGTCCGAAGATCGTCCTGGCCAAGGTGGTCAAGCTCGACTGA
Translation:
MDPSPSTSIATYFADAGLILFALFLVLLNGFFVAAEFAMVKLRATRVETIAKQHGWRGAILRKVHNQLDAYL
SACQLGITLASLGLGWVGEPAFAELLEPLLAMIGVHSDELIRGISFFTAFFIISYLHIVVGELAPKSWAIRK
PELLSLWTAVPLYLFYWLMYPAIWLLNASANAILKIAGQGEPGPHHEHHYSRDELKLILHSSRAQDPSDQGM
RVLASAVELGELEVVDWANSREDLVYLEHDAPLADILAVIRRHKYSRYPVWDSHKGEFIGLLHIKDLLLALS
ALDSLPETFDLDELVRPLEIVTKHTPLSRLLEQFRKGGAHFAVVEEADHKVVGFLTMEDVLEVLVGDIQDEH
RKTERGILAYQPGKLLVRGDTPLFKLERLLGIDLDHVEADTLAGLVYDTLKRVPEEEEVLDTEGLRIIVKKM
RGPKIVLAKVVKLD*
AnnotationID:1143GeneID:1134
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 07:07:20
Gene Name:
Confidence Code:3
GeneProduct:putative metal ion transporter
Cell Localization:()
Synonyms:PA5362
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1253,COG4536,pfam01595
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58898.1| (AE016875) transporter, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 446

 Score =  753 bits (1944), Expect = 0.0
 Identities = 369/446 (82%), Positives = 416/446 (93%)

>gb|AAN70887.1|AE016732_12 (AE016794) metal ion transporter, putative [Pseudomonas putida
           KT2440]
          Length = 446

 Score =  746 bits (1925), Expect = 0.0
 Identities = 365/446 (81%), Positives = 409/446 (91%)

Structural Features:
COG1253, TlyC, Hemolysins and related proteins containing CBS domains
CD-Length = 429 residues,  97.9% aligned
Score =  345 bits (886), Expect = 6e-96
Identities = 175/433 (40%), Positives = 246/433 (56%), Gaps = 15/433 (3%)


COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB 
[Inorganic ion transport and metabolism]

pfam01595, DUF21, Domain of unknown function DUF21.

Genomic Context:
Comment:
ReferenceID:2271
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19413
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34736
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1134_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1134

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2031 PA5362_tr translation of PA5362 446 99.77 99.77 0 2278.0
68707 gb|AAG08747.1|AE004948_3 (AE004948) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 446 99.77 99.77 0 2278.0
68708 gb|AAO58898.1| (AE016875) transporter, putative [Pseudomonas syringae pv. tomato str. DC3000] 446 82.73 93.27 0 1944.0
68709 gb|AAN70887.1|AE016732_12 (AE016794) metal ion transporter, putative [Pseudomonas putida KT2440] 446 81.83 91.70 0 1925.0
68712 gb|AAM75363.1|AF521648_3 (AF521648) hemolysin-like protein [Pseudomonas syringae] 449 49.44 55.90 165 1036.0
GC ORFID: 44136How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5362Glimmer Score:
Start: 5565583Stop: 5566923
Length: 1341
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5362 translation of PA5362Homolog Bit Score 882.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene2899 (ORF: BLASTX 755.0), t_PA5362 (ORF: GLIMMER)
GC ORF Sequence
ATGGACCCTTCTCCTAGTACCAGCATCGCCACCTATTTCGCCGATGCCGGCCTGATCCTCTTTGCGCTTTTC
CTCGTCCTGCTCAACGGCTTCTTCGTCGCCGCCGAGTTCGCCATGGTCAAGCTCCGCGCCACCCGCGTGGAA
ACCATCGCCAAGCAGCACGGCTGGCGCGGCGCCATCCTGCGCAAGGTACACAACCAGCTGGACGCCTACCTG
TCCGCCTGCCAGTTGGGCATCACCCTGGCCTCCCTGGGCCTGGGCTGGGTCGGCGAGCCGGCCTTCGCCGAA
CTCCTGGAACCGCTGCTGGCGATGATCGGCGTGCATTCCGACGAACTGATCCGCGGGATCTCCTTCTTCACC
GCGTTCTTCATCATTTCCTACCTGCACATCGTGGTCGGCGAGCTGGCGCCCAAGTCCTGGGCGATCCGCAAG
CCGGAACTGCTGTCGCTGTGGACGGCGGTGCCGCTGTACCTCTTCTACTGGCTGATGTACCCGGCGATCTGG
CTGCTCAACGCCAGCGCCAACGCCATCCTCAAGATCGCCGGCCAGGGCGAGCCCGGCCCGCACCACGAGCAT
CACTACAGCCGCGACGAACTGAAGCTGATTCTCCACTCCAGCCGCGCCCAGGACCCCAGCGACCAGGGCATG
CGCGTGCTGGCCTCGGCGGTGGAGCTGGGCGAGCTGGAGGTGGTCGACTGGGCCAACTCCCGCGAAGACCTG
GTCTACCTCGAGCACGACGCGCCGCTGGCGGACATCCTCGCGGTGATCCGCCGCCACAAGTACAGCCGCTAC
CCGGTCTGGGACAGCCACAAGGGCGAGTTCATCGGCCTGCTGCACATCAAGGACCTGCTGCTGGCACTGTCC
GCCCTGGACAGCCTGCCGGAGACCTTCGACCTCGACGAACTGGTGCGCCCGCTGGAGATCGTCACCAAGCAC
ACCCCGCTGTCGCGCCTGCTGGAGCAGTTCCGCAAGGGCGGCGCGCACTTCGCCGTGGTGGAAGAGGCCGAT
CACAAGGTGGTCGGCTTCCTGACCATGGAGGACGTGCTGGAAGTGCTGGTCGGCGACATCCAGGACGAACAC
CGCAAGACCGAGCGCGGCATCCTCGCCTACCAGCCGGGCAAGCTGCTGGTGCGCGGCGACACACCGCTGTTC
AAGCTCGAGCGCCTGCTCGGCATCGACCTCGATCATGTCGAGGCGGACACTCTCGCCGGGCTGGTCTACGAC
ACCCTGAAGCGGGTGCCGGAGGAAGAGGAAGTCCTCGACACCGAGGGCCTGCGGATCATCGTGAAGAAGATG
CGCGGTCCGAAGATCGTCCTGGCCAAGGTGGTCAAGCTCGACTGA