ViewGene
Locus Name:
GeneID:
Location:

GeneID:1133
TrivialName: PA14_64590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64590
PAO1 Ortholog Locus:PA4887
Sequence Length:1317
Protein Length:438
Start: 5755174
Stop: 5753858
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08272.1|AE004901_14 (AE004901) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 438/438 (100%), Positives = 438/438 (100%)
Sequence:
ATGTTCAGCCCGCTCGTCACCTTTCCCGCGCTCTACACCGCCACCCTGCTCATGCTGGCCGGCTCCGGCCTG
TTCACCACCTACATCGGCCTGCGCCTGACCCAGGAAGGCGCAGGCGACCTGTGGGTCGGCGGGCTGATGGCG
TCCTACTATTTCGGCCTGGTCTGCGGTGGAAAATTCGGACACAAGCTGATCGCCAGCTTCGGCCATATCCGC
TCCTACGTGGCTTGCGCCGGGATTGCCACCGTGACCGTGCTGCTGCATGCCCTGGTCGATCAGCTGGAAGTC
TGGCTGCTGCTGCGCTTCATCACCGGTGCGGTGATGATGAACCAGTACATGGTGATCGAGAGCTGGCTCAAC
GAGCAGGCCGAGAGCCACCAGCGCGGCAAGGTGTTCGCCGGCTACATGGTCGCCGTCGACCTTGGCCTGGTG
CTCGGCCAGGGCCTGCTGGCGCTGAGCCCGACCCTCGACTACAAGCCGTTGCTGCTGGTCGCCATCTGCTTC
GCCTCGTGCCTGATCCCGCTGGCCATGACCCGTCGCGTGCACCCGGCCAAGCTGGTCGCCGCGCCGCTGGAA
GTGCGTTTCTTCTGGCAACGCGTGCCGCAGGCGCTGGGCACCATCTTCATCGCCGGCCTGATGGTCGGCGCC
TTCTACGGCCTGGCGCCGGTCTACGCCAACCGCAACGGCCTGGATGCCTCGCAATCGAGTTTCTTCGTCGGC
ATGTGCATCGTCGCCGGTTTCTGTGCGCAGTGGCCGCTGGGCTGGCTGTCCGACCGCCTCGACCGCAGTTGG
CTGATCCGCGGCAATGCGGTGCTGCTGTGCCTGGCCTCGATCCCGATGTGGGGGCTGGTGACGCTGCCGTAC
TGGCTGCTGCTGGCCAACGGGTTCGTTACCGGCATGCTGCTGTTCACCCTCTACCCGCTGGCGGTGGCGCTG
GCCAACGACCACGTCGAGCAGCCGCGCCGGGTCGCGTTGTCGGCGATGCTGCTGACCACCTACGGGGTCGGC
GCCTGTATCGGCCCGCTGGTGGCCGGCGCGCTGATGCGCCACTTCGGTCCGGGGCTGTTCTACATGCTGGTG
TCCGGCTACGCGGTGCTGCTGGTGTTCTGGGTGCAGCCCAAGCGCGTCACCGGCGAACACCGGGTCGACGAG
GCGCCGCTGCAACACGTGGCGATGCCGGACACGGTCAGCCCGATGGCCGCCACCCTCGACCCGCGCGTCGAG
GAAGTGCCGGAGGAGTTGGTGGTGGAGGCGCCGGCGAATATCGGCCGCTCcgaCGGTGAGCCGGACGCCGGC
GAGAAGCCCGCTCAGTCCTGA
Translation:
MFSPLVTFPALYTATLLMLAGSGLFTTYIGLRLTQEGAGDLWVGGLMASYYFGLVCGGKFGHKLIASFGHIR
SYVACAGIATVTVLLHALVDQLEVWLLLRFITGAVMMNQYMVIESWLNEQAESHQRGKVFAGYMVAVDLGLV
LGQGLLALSPTLDYKPLLLVAICFASCLIPLAMTRRVHPAKLVAAPLEVRFFWQRVPQALGTIFIAGLMVGA
FYGLAPVYANRNGLDASQSSFFVGMCIVAGFCAQWPLGWLSDRLDRSWLIRGNAVLLCLASIPMWGLVTLPY
WLLLANGFVTGMLLFTLYPLAVALANDHVEQPRRVALSAMLLTTYGVGACIGPLVAGALMRHFGPGLFYMLV
SGYAVLLVFWVQPKRVTGEHRVDEAPLQHVAMPDTVSPMAATLDPRVEEVPEELVVEAPANIGRSDGEPDAG
EKPAQS*
AnnotationID:1142GeneID:1133
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 12:12:58
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA4887
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE42993.1| (BX640419) putative membrane transport protein [Bordetella
           pertussis]
          Length = 466

 Score =  485 bits (1249), Expect = e-136
 Identities = 247/455 (54%), Positives = 316/455 (69%), Gaps = 19/455 (4%)

>emb|CAE31833.1| (BX640441) putative membrane transport protein [Bordetella
           bronchiseptica]
          Length = 488

 Score =  484 bits (1246), Expect = e-136
 Identities = 246/455 (54%), Positives = 316/455 (69%), Gaps = 19/455 (4%)

>gb|AAN69976.1|AE016635_12 (AE016790) major facilitator family transporter [Pseudomonas putida
           KT2440]
          Length = 444

 Score =  456 bits (1173), Expect = e-127
 Identities = 233/429 (54%), Positives = 296/429 (68%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2269




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19411




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35169




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1133_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1133
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2029
                           PA4887_tr
                           translation of PA4887
                           438
                           99.99
                           99.99
                           0
                           2279.0
     

     
     
68696
                           gb|AAG08272.1|AE004901_14
                           (AE004901) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           438
                           99.99
                           99.99
                           0
                           2279.0
     

     
     
2030
                           PA3355_tr
                           translation of PA3355
                           448
                           57.14
                           69.41
                           24
                           1270.0
     

     
     
68697
                           gb|AAG06743.1|AE004757_12
                           (AE004757) hypothetical protein PA3355 [Pseudomonas aeruginosa PAO1]
                           448
                           57.14
                           69.41
                           24
                           1270.0
     

     
     
68698
                           emb|CAE42993.1|
                           (BX640419) putative membrane transport protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           466
                           53.00
                           67.81
                           28
                           1263.0
     

     






      

          
GC ORFID: 44135How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4887Glimmer Score: 

          
Start: 5018855Stop: 5017539

          
Length: 1317


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4887 translation of PA4887Homolog Bit Score 882.0

          
Other Homologs:  t_PA3355 (ORF: BLASTX 491.0), t_PA4887 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCAGCCCGCTCGTCACCTTTCCCGCGCTCTACACCGCCACCCTGCTCATGCTGGCCGGCTCCGGCCTG 
TTCACCACCTACATCGGCCTGCGCCTGACCCAGGAAGGCGCAGGCGACCTGTGGGTCGGCGGGCTGATGGCG 
TCCTACTATTTCGGCCTGGTCTGCGGTGGAAAATTCGGACACAAGCTGATCGCCAGCTTCGGCCATATCCGC 
TCCTACGTGGCTTGCGCCGGGATTGCCACCGTGACCGTGCTGCTGCATGCCCTGGTCGATCAGCTGGAAGTC 
TGGCTGCTGCTGCGCTTCATCACCGGTGCGGTGATGATGAACCAGTACATGGTGATCGAGAGCTGGCTCAAC 
GAGCAGGCCGAGAGCCACCAGCGCGGCAAGGTGTTCGCCGGCTACATGGTCGCCGTCGACCTTGGCCTGGTG 
CTCGGCCAGGGCCTGCTGGCGCTGAGCCCGACCCTCGACTACAAGCCGTTGCTGCTGGTCGCCATCTGCTTC 
GCCTCGTGCCTGATCCCGCTGGCCATGACCCGTCGCGTGCACCCGGCCAAGCTGGTCGCCGCGCCGCTGGAA 
GTGCGTTTCTTCTGGCAACGCGTGCCGCAGGCGCTGGGCACCATCTTCATCGCCGGCCTGATGGTCGGCGCC 
TTCTACGGCCTGGCGCCGGTCTACGCCAACCGCAACGGCCTGGATGCCTCGCAATCGAGTTTCTTCGTCGGC 
ATGTGCATCGTCGCCGGTTTCTGTGCGCAGTGGCCGCTGGGCTGGCTGTCCGACCGCCTCGACCGCAGTTGG 
CTGATCCGCGGCAATGCGGTGCTGCTGTGCCTGGCCTCGATCCCGATGTGGGGGCTGGTGACGCTGCCGTAC 
TGGCTGCTGCTGGCCAACGGGTTCGTTACCGGCATGCTGCTGTTCACCCTCTACCCGCTGGCGGTGGCGCTG 
GCCAACGACCACGTCGAGCAGCCGCGCCGGGTCGCGTTGTCGGCGATGCTGCTGACCACCTACGGGGTCGGC 
GCCTGTATCGGCCCGCTGGTGGCCGGCGCGCTGATGCGCCACTTCGGTCCGGGGCTGTTCTACATGCTGGTG 
TCCGGCTACGCGGTGCTGCTGGTGTTCTGGGTGCAGCCCAAGCGCGTCACCGGCGAACACCGGGTCGACGAG 
GCGCCGCTGCAACACGTGGCGATGCCGGACACGGTCAGCCCGATGGCCGCCACCCTCGACCCGCGCGTCGAG 
GAAGTGCCGGAGGAGTTGGTGGTGGAGGCGCCGGCGAATATCGGCCGCTCcgaCGGTGAGCCGGACGCCGGC 
GAGAAGCCCGCTCAGTCCTGA