ViewGene
Locus Name:
GeneID:
Location:

GeneID:1132
TrivialName: PA14_35330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35330
PAO1 Ortholog Locus:PA2262
Sequence Length:1308
Protein Length:435
Start: 3142237
Stop: 3140930
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05650.1|AE004652_3 (AE004652) probable 2-ketogluconate transporter [Pseudomonas aeruginosa PAO1]
Identities = 435/435 (100%), Positives = 435/435 (100%)
Sequence:
ATGACCATGCCTCGCCTCGCCAGCAGCCGCTGGTGGTACATCATGCCGATCGTTTTCGTCACCTACAGCCTG
GCCTACCTGGACCGCGCCAACTACGGCTTCGCCGCCGCCTCCGGGATGGCCGACGACCTGCGGATCACTCCC
GGGCTGTCCTCGCTGCTGGGCGCGCTGTTCTTCCTCGGTTACTTCTTCTTCCAGGTGCCGGGGGCGATCTAC
GCGGAAAAGCGCAGCGTCAAGAAGCTGATCTTCGTCAGCCTGATCCTCTGGGGCGGGCTGGCCACCCTGACC
GGGATGGTCGCCAACGTCTACCTGCTGATCGGCATCCGCTTCCTCCTCGGCGTGGTCGAGGCGGCGGTGATG
CCAGCGATGCTGGTCTACCTCTGCCACTGGTTCACCCGCGCCGAGCGCTCGCGGGCGAACACCTTCCTGATC
CTCGGCAACCCGGTGACCATCCTCTGGATGTCGGTGGTCTCCGGCTACCTGGTGGAGCATTTCAGCTGGCGC
TGGATGTTCATCATCGAAGGCCTGCCGGCGGTGATCTGGGCCTTCATCTGGTGGCGCCTGGTGGATGACCGC
CCGCGCCAGGCCGCCTGGCTGAGCGGCTCGGAAAAACGCGACCTGGAAGACGCCCTGGCCGCCGAGCAGCAG
GGCATCAAGCCAGTGAAGAACTACCGCGAGGCGTTCCGTTCGCCAAAGGTCATCGTCCTCTCGCTGCAGTAT
TTCTGCTGGAGCATCGGCGTCTACGGCTTCGTCCTCTGGCTGCCGTCGATCCTCAAGCACGGCGCCAACATC
GACATCATCGAAGCCGGCTGGCTGTCGGCGCTGCCCTACCTGGCGGCGGTGATCGCCATGCTCGGAGTGTCC
TGGGCCTCGGACCGGTTGCAGAAACGCAAGCGTTTCGTCTGGCCGCCGCTGCTCATCGCGTCCATCGCCTTC
TACGGTTCCTACGCCCTCGGCAGCGAGCACTTCTGGCTGTCCTACGCCCTGCTGGTGCTGGCCGGGGCCTGC
ATGTACGCGCCCTACGGACCGTTCTTCGCCATCGTCCCGGAAGTCCTCCCGGCCAACGTCGCCGGCGGCGCC
ATGGCGCTGATCAACAGCATGGGCGCGCTGGGCTCGTTCTCCGGCTCCTGGCTGGTCGGCTACCTGAACGGC
ATCACCGGCGGGCCCGGGGCTTCCTATCTGTTCATGAGCGGAGCGCTGCTGCTGTCGGTGCTGCTCACCGTG
TTCCTCAACCCGCACGCCGACAAGCGCGAGCCCGATGCCGCTCGCGCGCACGCCTCGCGGCGGGCGGCGCCG
GCCCACCCCTGA
Translation:
MTMPRLASSRWWYIMPIVFVTYSLAYLDRANYGFAAASGMADDLRITPGLSSLLGALFFLGYFFFQVPGAIY
AEKRSVKKLIFVSLILWGGLATLTGMVANVYLLIGIRFLLGVVEAAVMPAMLVYLCHWFTRAERSRANTFLI
LGNPVTILWMSVVSGYLVEHFSWRWMFIIEGLPAVIWAFIWWRLVDDRPRQAAWLSGSEKRDLEDALAAEQQ
GIKPVKNYREAFRSPKVIVLSLQYFCWSIGVYGFVLWLPSILKHGANIDIIEAGWLSALPYLAAVIAMLGVS
WASDRLQKRKRFVWPPLLIASIAFYGSYALGSEHFWLSYALLVLAGACMYAPYGPFFAIVPEVLPANVAGGA
MALINSMGALGSFSGSWLVGYLNGITGGPGASYLFMSGALLLSVLLTVFLNPHADKREPDAARAHASRRAAP
AHP*
AnnotationID:1141GeneID:1132
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 07:07:06
Gene Name:
Confidence Code:3
GeneProduct:putative 2-ketogluconate transporter
Cell Localization:()
Synonyms:kguT
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2271,COG2814,pfam00083
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68981.1|AE016530_4 (AE016786) 2-ketogluconate transporter, putative [Pseudomonas
           putida KT2440]
          Length = 430

 Score =  746 bits (1925), Expect = 0.0
 Identities = 359/411 (87%), Positives = 383/411 (93%)

>gb|AAK69524.1|AF282849_5 (AF282849) integral membrane protein [Klebsiella oxytoca]
          Length = 439

 Score =  280 bits (717), Expect = 1e-74
 Identities = 162/435 (37%), Positives = 246/435 (56%), Gaps = 8/435 (1%)

>gb|AAM85221.1|AE013768_10 (AE013768) putative sugar transporter [Yersinia pestis KIM]
          Length = 451

 Score =  245 bits (626), Expect = 3e-64
 Identities = 138/427 (32%), Positives = 231/427 (54%), Gaps = 7/427 (1%)








 
Structural Features:
COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]
CD-Length = 448 residues,  92.9% aligned
Score =  134 bits (340), Expect = 1e-32
Identities = 93/419 (22%), Positives = 163/419 (38%), Gaps = 15/419 (3%)

COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
CD-Length = 394 residues,  89.6% aligned
Score = 66.4 bits (162), Expect = 7e-12
Identities = 70/378 (18%), Positives = 133/378 (35%), Gaps = 25/378 (6%)

pfam00083, Sugar_tr, Sugar (and other) transporter.
CD-Length = 448 residues,  86.8% aligned
Score = 68.4 bits (167), Expect = 2e-12
Identities = 81/392 (20%), Positives = 149/392 (38%), Gaps = 31/392 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2267




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19409




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32517




  
Author/Investigator(s):
        





  
Title:
        CD




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1132_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1132
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2028
                           PA2262_tr
                           translation of PA2262
                           435
                           99.99
                           99.99
                           0
                           2279.0
     

     
     
68693
                           gb|AAG05650.1|AE004652_3
                           (AE004652) probable 2-ketogluconate transporter [Pseudomonas aeruginosa PAO1]
                           435
                           99.99
                           99.99
                           0
                           2279.0
     

     
     
68694
                           gb|AAK37649.1|
                           (AF012100) KguT [Pseudomonas aeruginosa]
                           435
                           99.99
                           99.99
                           0
                           2279.0
     

     
     
68695
                           gb|AAN68981.1|AE016530_4
                           (AE016786) 2-ketogluconate transporter, putative [Pseudomonas putida KT2440]
                           436
                           83.71
                           89.44
                           7
                           1923.0
     

     






      

          
GC ORFID: 44134How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2262Glimmer Score: 

          
Start: 1811679Stop: 1812986

          
Length: 1308


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2262 translation of PA2262Homolog Bit Score 882.0

          
Other Homologs:  t_PA2262 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCATGCCTCGCCTCGCCAGCAGCCGCTGGTGGTACATCATGCCGATCGTTTTCGTCACCTACAGCCTG 
GCCTACCTGGACCGCGCCAACTACGGCTTCGCCGCCGCCTCCGGGATGGCCGACGACCTGCGGATCACTCCC 
GGGCTGTCCTCGCTGCTGGGCGCGCTGTTCTTCCTCGGTTACTTCTTCTTCCAGGTGCCGGGGGCGATCTAC 
GCGGAAAAGCGCAGCGTCAAGAAGCTGATCTTCGTCAGCCTGATCCTCTGGGGCGGGCTGGCCACCCTGACC 
GGGATGGTCGCCAACGTCTACCTGCTGATCGGCATCCGCTTCCTCCTCGGCGTGGTCGAGGCGGCGGTGATG 
CCAGCGATGCTGGTCTACCTCTGCCACTGGTTCACCCGCGCCGAGCGCTCGCGGGCGAACACCTTCCTGATC 
CTCGGCAACCCGGTGACCATCCTCTGGATGTCGGTGGTCTCCGGCTACCTGGTGGAGCATTTCAGCTGGCGC 
TGGATGTTCATCATCGAAGGCCTGCCGGCGGTGATCTGGGCCTTCATCTGGTGGCGCCTGGTGGATGACCGC 
CCGCGCCAGGCCGCCTGGCTGAGCGGCTCGGAAAAACGCGACCTGGAAGACGCCCTGGCCGCCGAGCAGCAG 
GGCATCAAGCCAGTGAAGAACTACCGCGAGGCGTTCCGTTCGCCAAAGGTCATCGTCCTCTCGCTGCAGTAT 
TTCTGCTGGAGCATCGGCGTCTACGGCTTCGTCCTCTGGCTGCCGTCGATCCTCAAGCACGGCGCCAACATC 
GACATCATCGAAGCCGGCTGGCTGTCGGCGCTGCCCTACCTGGCGGCGGTGATCGCCATGCTCGGAGTGTCC 
TGGGCCTCGGACCGGTTGCAGAAACGCAAGCGTTTCGTCTGGCCGCCGCTGCTCATCGCGTCCATCGCCTTC 
TACGGTTCCTACGCCCTCGGCAGCGAGCACTTCTGGCTGTCCTACGCCCTGCTGGTGCTGGCCGGGGCCTGC 
ATGTACGCGCCCTACGGACCGTTCTTCGCCATCGTCCCGGAAGTCCTCCCGGCCAACGTCGCCGGCGGCGCC 
ATGGCGCTGATCAACAGCATGGGCGCGCTGGGCTCGTTCTCCGGCTCCTGGCTGGTCGGCTACCTGAACGGC 
ATCACCGGCGGGCCCGGGGCTTCCTATCTGTTCATGAGCGGAGCGCTGCTGCTGTCGGTGCTGCTCACCGTG 
TTCCTCAACCCGCACGCCGACAAGCGCGAGCCCGATGCCGCTCGCGCGCACGCCTCGCGGCGGGCGGCGCCG 
GCCCACCCCTGA