ViewGene

Locus Name:
GeneID:
Location:

GeneID:1131
TrivialName: PA14_62840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62840
PAO1 Ortholog Locus:PA4749
Sequence Length:1338
Protein Length:445
Start: 5606833
Stop: 5605496
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08135.1|AE004888_10 (AE004888) phosphoglucosamine mutase [Pseudomonas aeruginosa PAO1]
Identities = 445/445 (100%), Positives = 445/445 (100%)
Sequence:
ATGAGCAGAAAATACTTCGGGACTGACGGTATCCGTGGTCGTGTTGGCGAGTTTCCGATTACTCCGGACTTC
GTTCTCAAGCTGGGCTGGGCGGTGGGCATGGCCTTCCGCCGGCAGGGCAACTGCCGGGTCCTGATCGGCAAG
GACACGCGCAGCTCGGGTTACATGTTCGAGTCGGCCTTCGAGGCCGGGCTCTCCGCTTCCGGCGCCGATACC
CTGTTGCTGGGACCGATGCCTACCCCCGGCATCGCCTACCTGACGCGGACTTTCCACGCCGAGGCCGGGGTG
GTGATCAGCGCTTCGCACAATCCCCACGACGACAACGGCATCAAGTTCTTCTCCGGGCAGGGGACCAAGCTG
CCGGACGACGTCGAGCTGATGATCGAGGAACTGCTCGATGCGCCGATGACCGTGGTGGAGTCCGCCCGTCTC
GGCAAGGTTTCGCGGATCAATGACGCGGCGGGGCGCTACATCGAATTCTGCAAGAGCAGCGTGCCGACCAGC
ACCGACTTCAACGGTCTCAAGGTCGTGCTCGACTGCGCCAACGGCGCTACCTACAAGATCGCTCCCAGCGTC
TTCCGGGAACTGGGCGCGGAAGTGACGGTGCTGGCGGCCAGCCCGAATGGCCTGAACATCAACGACAAGTGC
GGCTCCACTCACCTGGATGGCCTGCAGGCTGCGGTGGTCGAGCACCATGCCGACCTCGGCATCGCCTTCGAC
GGCGACGGCGACCGGGTGATGATGGTCGACCATACCGGTGCGGTCGTGGATGGCGACGAACTGCTTTTCCTC
ATCGCGCGCGACCTGCAGGAAAGCGGGCGGCTGCAAGGTGGTGTGGTCGGCACCCTGATGAGCAACCTCGGC
CTGGAGCTGGCTTTGCAGGAACTGCATATCCCGTTCGTGCGGGCGAAGGTCGGCGATCGCTATGTGATGGCC
GAACTGCTGGCTCGGAACTGGATGCTGGGAGGGGAGAATTCGGGGCATATCGTCTGCTGCCAGAACACCACG
ACGGGCGATGCCATCATCGCGGCGCTACAGGTGCTGATGGCGCTCAAGCATCGCGGCCAGACCCTGGCCGAG
GCGCGCCAGGGGATTCGCAAGTGCCCCCAGGTGCTGATCAATGTGCGCTTCAAGGGCGAAAACGATCCGCTC
GAGCACCCCTCGGTGAAGGAGGCCAGCGTCCGCGTCACCGAGCAAATGGGCGGGCGCGGTCGTGTCCTGCTG
CGCAAATCCGGCACGGAGCCGTTGGTCCGGGTGATGGTCGAGGGCGACGAGGAAGCTAGCGTTCGTGCCCAC
GCCGAACAGCTGGCAAAAATTGTTTCTGAGGTATGTGCTTGA
Translation:
MSRKYFGTDGIRGRVGEFPITPDFVLKLGWAVGMAFRRQGNCRVLIGKDTRSSGYMFESAFEAGLSASGADT
LLLGPMPTPGIAYLTRTFHAEAGVVISASHNPHDDNGIKFFSGQGTKLPDDVELMIEELLDAPMTVVESARL
GKVSRINDAAGRYIEFCKSSVPTSTDFNGLKVVLDCANGATYKIAPSVFRELGAEVTVLAASPNGLNINDKC
GSTHLDGLQAAVVEHHADLGIAFDGDGDRVMMVDHTGAVVDGDELLFLIARDLQESGRLQGGVVGTLMSNLG
LELALQELHIPFVRAKVGDRYVMAELLARNWMLGGENSGHIVCCQNTTTGDAIIAALQVLMALKHRGQTLAE
ARQGIRKCPQVLINVRFKGENDPLEHPSVKEASVRVTEQMGGRGRVLLRKSGTEPLVRVMVEGDEEASVRAH
AEQLAKIVSEVCA*
AnnotationID:1140GeneID:1131
AnnotatorUID: diggins
Modification Date/Time: 2005-04-27 07:07:56
Gene Name:glmM
Confidence Code:1
GeneProduct:phosphoglucosamine mutase
Cell Localization:()
Synonyms:mrsA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1109
Secondary Functional Category(ies):central intermediary metabolism
EC Number:5.4.2.10
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70288.1|AE016669_6 (AE016791) phosphoglucosamine mutase [Pseudomonas putida KT2440]
          Length = 446

 Score =  758 bits (1957), Expect = 0.0
 Identities = 371/445 (83%), Positives = 412/445 (92%), Gaps = 1/445 (0%)

>gb|AAO57943.1| (AE016872) phosphoglucosamine mutase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 447

 Score =  729 bits (1882), Expect = 0.0
 Identities = 356/445 (80%), Positives = 403/445 (90%), Gaps = 1/445 (0%)

>dbj|BAB37478.1| (AP002564) putative phosphoglucomutase / phosphomannomutase
           [Escherichia coli O157:H7]
          Length = 445

 Score =  540 bits (1390), Expect = e-153
 Identities = 268/443 (60%), Positives = 330/443 (74%), Gaps = 1/443 (0%)
Structural Features:
COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and metabolism]
CD-Length = 464 residues,  98.5% aligned
Score =  429 bits (1103), Expect = 4e-121
Identities = 207/459 (45%), Positives = 278/459 (60%), Gaps = 17/459 (3%)
Genomic Context:
Comment:
ReferenceID:2265
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19407
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37658
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1131_cdd.html
URL:
ReferenceID:37723
Author/Investigator(s): Tavares IM, Jolly L, Pompeo F, Leitao JH, Fialho AM, Sa-Correia I, Mengin-Lecreulx D.
Title: Identification of the Pseudomonas aeruginosa glmM gene, encoding phosphoglucosamine mutase.
PubMed: 10913078
MedLine:
Source:
J Bacteriol. 2000 Aug;182(16):4453-7.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10913078
Homologs By Global Alignment
Gene ID:1131

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2027 PA4749_tr translation of PA4749 445 99.99 99.99 0 2281.0
68509 gb|AAG08135.1|AE004888_10 (AE004888) phosphoglucosamine mutase [Pseudomonas aeruginosa PAO1] 445 99.99 99.99 0 2281.0
68510 gb|AAN70288.1|AE016669_6 (AE016791) phosphoglucosamine mutase [Pseudomonas putida KT2440] 446 83.18 92.37 1 1959.0
68511 gb|AAO57943.1| (AE016872) phosphoglucosamine mutase [Pseudomonas syringae pv. tomato str. DC3000] 447 79.64 90.15 2 1883.0
68512 gb|AAC45130.1| (U85643) MrsA [Pseudomonas syringae pv. syringae] 447 79.64 89.26 2 1879.0
GC ORFID: 44133How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4749Glimmer Score:
Start: 4870513Stop: 4869176
Length: 1338
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4749 translation of PA4749Homolog Bit Score 883.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5487 (ORF: BLASTX 728.0), t_PA4749 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAGAAAATACTTCGGGACTGACGGTATCCGTGGTCGTGTTGGCGAGTTTCCGATTACTCCGGACTTC
GTTCTCAAGCTGGGCTGGGCGGTGGGCATGGCCTTCCGCCGGCAGGGCAACTGCCGGGTCCTGATCGGCAAG
GACACGCGCAGCTCGGGTTACATGTTCGAGTCGGCCTTCGAGGCCGGGCTCTCCGCTTCCGGCGCCGATACC
CTGTTGCTGGGACCGATGCCTACCCCCGGCATCGCCTACCTGACGCGGACTTTCCACGCCGAGGCCGGGGTG
GTGATCAGCGCTTCGCACAATCCCCACGACGACAACGGCATCAAGTTCTTCTCCGGGCAGGGGACCAAGCTG
CCGGACGACGTCGAGCTGATGATCGAGGAACTGCTCGATGCGCCGATGACCGTGGTGGAGTCCGCCCGTCTC
GGCAAGGTTTCGCGGATCAATGACGCGGCGGGGCGCTACATCGAATTCTGCAAGAGCAGCGTGCCGACCAGC
ACCGACTTCAACGGTCTCAAGGTCGTGCTCGACTGCGCCAACGGCGCTACCTACAAGATCGCTCCCAGCGTC
TTCCGGGAACTGGGCGCGGAAGTGACGGTGCTGGCGGCCAGCCCGAATGGCCTGAACATCAACGACAAGTGC
GGCTCCACTCACCTGGATGGCCTGCAGGCTGCGGTGGTCGAGCACCATGCCGACCTCGGCATCGCCTTCGAC
GGCGACGGCGACCGGGTGATGATGGTCGACCATACCGGTGCGGTCGTGGATGGCGACGAACTGCTTTTCCTC
ATCGCGCGCGACCTGCAGGAAAGCGGGCGGCTGCAAGGTGGTGTGGTCGGCACCCTGATGAGCAACCTCGGC
CTGGAGCTGGCTTTGCAGGAACTGCATATCCCGTTCGTGCGGGCGAAGGTCGGCGATCGCTATGTGATGGCC
GAACTGCTGGCTCGGAACTGGATGCTGGGAGGGGAGAATTCGGGGCATATCGTCTGCTGCCAGAACACCACG
ACGGGCGATGCCATCATCGCGGCGCTACAGGTGCTGATGGCGCTCAAGCATCGCGGCCAGACCCTGGCCGAG
GCGCGCCAGGGGATTCGCAAGTGCCCCCAGGTGCTGATCAATGTGCGCTTCAAGGGCGAAAACGATCCGCTC
GAGCACCCCTCGGTGAAGGAGGCCAGCGTCCGCGTCACCGAGCAAATGGGCGGGCGCGGTCGTGTCCTGCTG
CGCAAATCCGGCACGGAGCCGTTGGTCCGGGTGATGGTCGAGGGCGACGAGGAAGCTAGCGTTCGTGCCCAC
GCCGAACAGCTGGCAAAAATTGTTTCTGAGGTATGTGCTTGA