ViewGene

Locus Name:
GeneID:
Location:

GeneID:1130
TrivialName: PA14_60990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60990
PAO1 Ortholog Locus:PA4609
Sequence Length:1362
Protein Length:453
Start: 5441103
Stop: 5439742
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07997.1|AE004875_3 (AE004875) DNA repair protein RadA [Pseudomonas aeruginosa PAO1]
Identities = 453/453 (100%), Positives = 453/453 (100%)
Sequence:
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGT
GCGGATTGCGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGGCGCGGC
GGCTGGGCCGGCCAGCAGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAGATGCCGCGCTTCACG
ACCGGTTCCACCGAACTGGACCGGGTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGC
GATCCCGGCATCGGCAAGTCGACCATTCTCCTGCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTG
TACGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCGATGCGCGCGCGGCGCCTGTCGTTGCCGGAAGACAAG
CTCAAGGTGATGACCGAGACCAGCATCGAGACCATCATCGCCACCGCGCGCCAGGAGCAGCCGCGGGTGATG
GTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGGCGTCGCCCAGGTCCGC
GAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCCACGTGACC
AAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAAGGCGAG
TCAGACGGCCGCCTGCGCCTGCTGCGGGCAGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTC
GGCATGACCGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCG
GTGCCCGGCAGCGTGGTGATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTC
GACACCAGTCACCTGGCGAATCCGCGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTG
GCGGTGCTGCACCGGCACGGCGGTATCCCGACCTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTC
AAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGGCGGTGATGTCCAGCTTGCGCAACCGCCCGCTG
CCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTGCGTCCGGTGCCGAGCGGCCAGGAG
CGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAACGCGCCGAAGGAGGCG
CCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGTGA
Translation:
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGRGGWAGQQANLKTLAEVSVEEMPRFT
TGSTELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDK
LKVMTETSIETIIATARQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVT
KEGALAGPRVLEHMVDTVLYFEGESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEA
VPGSVVMATWEGSRPMLVEVQALVDTSHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGV
KVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEVRPVPSGQERLKEAGKHGFKRAIVPLGNAPKEA
PAGLQVIAVTRLEQALDALFE*
AnnotationID:1139GeneID:1130
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:18
Gene Name:radA
Confidence Code:2
GeneProduct:DNA repair protein RadA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1066
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58086.1| (AE016872) DNA repair protein RadA [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 455

 Score =  814 bits (2102), Expect = 0.0
 Identities = 413/455 (90%), Positives = 435/455 (95%), Gaps = 2/455 (0%)

>dbj|BAB38770.1| (AP002569) probable ATP-dependent protease [Escherichia coli
           O157:H7]
          Length = 460

 Score =  573 bits (1477), Expect = e-163
 Identities = 287/455 (63%), Positives = 358/455 (78%), Gaps = 8/455 (1%)

Structural Features:
COG1066, Sms, Predicted ATP-dependent serine protease 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 456 residues,  99.8% aligned
Score =  666 bits (1719), Expect = 0.0
Identities = 282/457 (61%), Positives = 346/457 (75%), Gaps = 6/457 (1%)
Genomic Context:
Comment:
ReferenceID:2263
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19405
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31615
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1130_cdd.html
URL:
ReferenceID:33285
Author/Investigator(s): Seong KY, Chae SK, Kang HS.
Title: Cloning of an E. coli RecA and yeast RAD51 homolog, radA, an allele of the uvsC in Aspergillus nidulans and its mutator effects.
PubMed: 9163746
MedLine:
Source:
Mol Cells. 1997 Apr 30;7(2):284-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9163746
ReferenceID:33286
Author/Investigator(s): Song Y, Sargentini NJ.
Title: Escherichia coli DNA repair genes radA and sms are the same gene.
PubMed: 8759876
MedLine:
Source:
J Bacteriol. 1996 Aug;178(16):5045-8.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8759876
ReferenceID:33287
Author/Investigator(s): Sargentini NJ, Smith KC.
Title: Quantitation of the involvement of the recA, recB, recC, recF, recJ, recN, lexA, radA, radB, uvrD, and umuC genes in the repair of X-ray-induced DNA double-strand breaks in Escherichia coli.
PubMed: 3526390
MedLine:
Source:
Radiat Res. 1986 Jul;107(1):58-72.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3526390
Homologs By Global Alignment
Gene ID:1130

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2026 PA4609_tr translation of PA4609 453 99.99 99.99 0 2282.0
68388 gb|AAG07997.1|AE004875_3 (AE004875) DNA repair protein RadA [Pseudomonas aeruginosa PAO1] 453 99.99 99.99 0 2282.0
68389 gb|AAB49466.1| (U89384) RadA [Pseudomonas aeruginosa] 453 98.67 99.33 0 2256.0
68390 gb|AAO58086.1| (AE016872) DNA repair protein RadA [Pseudomonas syringae pv. tomato str. DC3000] 455 90.76 95.60 2 2104.0
68391 gb|AAN70217.1|AE016661_3 (AE016791) DNA repair protein RadA [Pseudomonas putida KT2440] 457 90.59 94.74 5 2091.0
GC ORFID: 44132How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4609Glimmer Score:
Start: 4704783Stop: 4703422
Length: 1362
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4609 translation of PA4609Homolog Bit Score 883.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5402 (ORF: BLASTX 813.0), t_PA4609 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGT
GCGGATTGCGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGGCGCGGC
GGCTGGGCCGGCCAGCAGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAGATGCCGCGCTTCACG
ACCGGTTCCACCGAACTGGACCGGGTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGC
GATCCCGGCATCGGCAAGTCGACCATTCTCCTGCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTG
TACGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCGATGCGCGCGCGGCGCCTGTCGTTGCCGGAAGACAAG
CTCAAGGTGATGACCGAGACCAGCATCGAGACCATCATCGCCACCGCGCGCCAGGAGCAGCCGCGGGTGATG
GTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGGCGTCGCCCAGGTCCGC
GAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCCACGTGACC
AAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAAGGCGAG
TCAGACGGCCGCCTGCGCCTGCTGCGGGCAGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTC
GGCATGACCGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCG
GTGCCCGGCAGCGTGGTGATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTC
GACACCAGTCACCTGGCGAATCCGCGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTG
GCGGTGCTGCACCGGCACGGCGGTATCCCGACCTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTC
AAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGGCGGTGATGTCCAGCTTGCGCAACCGCCCGCTG
CCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTGCGTCCGGTGCCGAGCGGCCAGGAG
CGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAACGCGCCGAAGGAGGCG
CCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGTGA