ViewGene
Locus Name:
GeneID:
Location:

GeneID:113
TrivialName: PA14_52260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52260
PAO1 Ortholog Locus:PA0928
Sequence Length:2778
Protein Length:925
Start: 4635805
Stop: 4638582
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04317.1|AE004527_4 (AE004527) sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
Identities = 925/925 (100%), Positives = 925/925 (100%)
Sequence:
GTGTTCAAGGATCTCGGCATCAAGGGGCGCGTACTGCTGCTCACCCTGCTCCCCACCAGCCTGCTGGCGATG
GTGCTTGGCGGTTACTTCACCTGGGTCCAGCTGTCCGACATGCGCGCCCAGTTGATCGAGCGCGGGCAACTG
ATCGCCGAACAACTGGCGCCGCTGGCCGCCACCGCGCTGGCGCGAAAGGATACCGCCGTGCTCAACCGCATC
GCCAACGAGGCGCTGGACCAACCGGACGTGCGCGCGGTGACCTTCCTCGACGCCCGCCAGGAACGCCTCGCC
CATGCCGGGCCAAGCATGCTCACCGTCGCCCCGGCCGGCGACGCCAGCCATCTGAGCATGTCCACCGAACTG
GACACCACGCACTTCCTGCTACCGGTTCTTGGCCGCCACCACAGCCTGTCCGGCGCCACCGAGCCTGACGAC
GAGCGCGTACTCGGCTGGGTCGAACTGGAACTGTCGCACCACGGGACCCTGCTGCGCGGATATCGCAGCCTG
TTCACCAGCCTCTTGCTGATCGCCGCCGGCCTCGGCGTCACCGCCCTCCTCGCCCTGCGCATGAGCCGCGCG
ATCAACGCGCCGCTGGAACTGATCAGCCAGGGCGTCGCCCAGCTCAAGGAAGGCCGCATGGAAACCCGCCTG
CCACCGATGGGCAGCAACGAGCTGGACGAACTGGCCTCCGGCATCAACCGCATGGCGGAAACGCTGCAGAGC
GCCCAGGAGGAAATGCAGCACAACATCGACCAGGCCACCGAGGACGTACGCCAGAACCTGGAAACCATCGAG
ATCCAGAACATCGAGCTGGACCTGGCGCGCAAGGAGGCCCTGGAGGCGAGCAGGATCAAGTCCGAGTTCCTC
GCCAACATGAGCCACGAGATCCGCACCCCGCTCAACGGCATCCTCGGTTTCACCAACCTGCTGCAGAAGAGC
GAGCTCAGCCCGCGCCAGCAGGACTACCTCACGACCATCCAGAAATCGGCGGAAAGCCTGCTGGGGATCATC
AACGAGATCCTCGACTTCTCGAAGATCGAGGCCGGCAAGCTGGTTCTGGAAAACCTCCCCTTCAATCTCCGC
GACCTGATCCAGGACGCCCTGACCATGCTGGCTCCGGCCGCCCACGAGAAGCAACTGGAACTGGTCAGCCTG
GTCTACCGGGATACCCCGATCCAATTGCAGGGCGACCCGCAGCGGCTGAAGCAGATCCTCACCAACCTGGTC
GGCAACGCCATCAAGTTCACCCAGGGCGGCACCGTCGCCGTACGCGCCATGCTCGAGGACGAAAGCGACGAC
CGCGCGCAGCTGCGGATCAGCGTACAGGACACCGGTATCGGCCTCTCCGAGGAGGACCAGCAAGCCTTGTTC
AAGGCCTTCAGCCAGGCCGACAACTCACTGTCGCGGCAAGCCGGTGGCACCGGCCTGGGCCTGGTGATCTCC
AAGCGCCTGATCGAGCAGATGGGCGGCGAGATCGGCGTCGACAGTACGCCTGGGGAAGGTGCCGAATTCTGG
ATCAGCCTGAGTCTGCCGAAAAGTCGCGACGACAACGAGGAGCCAGGCGCCTCCTGGGCCGCGGGCCAGCGC
GTGGCGCTGCTCGAACCGCAGGAGCTGACGCGCCGCTCGCTGCACCACCAGCTCACCGACTTCGGCCTGGAA
GTGAGCGAATTCGCCGACCTCGACAGCCTCCAGGAAAGCCTGCGCAACCCGCCGCCCGGCCAGTTGCCGATC
AGCCTGGCGGTGCTCGGCGTCTCGGCCGCGATCCATCCGCCGGAAGAGCTGAGCCAGTCGTTCTGGGAATTC
GAACGGCTCGGCTGCAAGACCCTGGTGCTCTGCCCGACCACCGAGCAGGCGCAATACCACGCGACCCTGCCC
GACGAACAGGTCGAGGCCAAGCCCGCCTGCACCCGCAAGCTGCAACGCAAGCTGCAGGAGTTGCTTCAAGTC
CGCCCGACGCGCAGCGACAAGCCCCACGCCATGGTTTCCGGACGGCCGCCACGGCTGCTCTGCGTCGACGAC
AACCCGGCCAACCTGCTGCTGGTGCAGACCCTGCTCAGCGACCTCGGCGCCCAGGTCACCGCGGTGGACAGC
GGCTACGCGGCCCTCGAGGTAGTGCAGCGCGAGCGCTTCGACCTGGTCTTCATGGACGTGCAGATGCCCGGC
ATGGACGGCCGCCAGGCCACCGAGGCGATCCGCCGCTGGGAGGCCGAGCGGGAAGTCAGCCCGGTGCCGGTG
ATCGCGCTCACCGCACATGCGCTTTCCAACGAGAAGCGCGCATTGCTGCAGGCCGGCATGGACGACTACCTG
ACCAAGCCGATCGACGAGCAGCAATTGGCCCAGGTAGTGCTGAAGTGGACGGGACTGAGCCTGGGCCAGTCG
CTGGCCAGCATGAGCCGTGCGCCGCAGCTCGGCCAGTTGAGCGTGCTCGACCCCGAGGAAGGGCTGCGCCTG
GCCGCCGGCAAGGCCGACCTCGCCGCCGACATGCTGGCGATGCTGCTGGCCTCGCTGGCGGCGGACCGCCAG
GCGATTCGCCAGGCCCGCGACAACGACGACCGCACCGCTTTGCTCGAGAGGGTCCACCGGCTGCATGGCGCC
ACCCGCTACTGTGGCGTGCCGCAGTTGCGCGCGGCCTGCCAGACCAGCGAAACCCTGCTCAAGCAGAACGAT
CCGGCGGCGGCCGCGGCCCTGGACGAGCTGGACAAGGCCATCGAGGCCCTGGCCGACACTGCCTCGGCCACC
ACCCACCTGTCTTCCACCAGCCTCGACTCCAGCGAACTCTGA
Translation:
MFKDLGIKGRVLLLTLLPTSLLAMVLGGYFTWVQLSDMRAQLIERGQLIAEQLAPLAATALARKDTAVLNRI
ANEALDQPDVRAVTFLDARQERLAHAGPSMLTVAPAGDASHLSMSTELDTTHFLLPVLGRHHSLSGATEPDD
ERVLGWVELELSHHGTLLRGYRSLFTSLLLIAAGLGVTALLALRMSRAINAPLELISQGVAQLKEGRMETRL
PPMGSNELDELASGINRMAETLQSAQEEMQHNIDQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFL
ANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLR
DLIQDALTMLAPAAHEKQLELVSLVYRDTPIQLQGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDESDD
RAQLRISVQDTGIGLSEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFW
ISLSLPKSRDDNEEPGASWAAGQRVALLEPQELTRRSLHHQLTDFGLEVSEFADLDSLQESLRNPPPGQLPI
SLAVLGVSAAIHPPEELSQSFWEFERLGCKTLVLCPTTEQAQYHATLPDEQVEAKPACTRKLQRKLQELLQV
RPTRSDKPHAMVSGRPPRLLCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQRERFDLVFMDVQMPG
MDGRQATEAIRRWEAEREVSPVPVIALTAHALSNEKRALLQAGMDDYLTKPIDEQQLAQVVLKWTGLSLGQS
LASMSRAPQLGQLSVLDPEEGLRLAAGKADLAADMLAMLLASLAADRQAIRQARDNDDRTALLERVHRLHGA
TRYCGVPQLRAACQTSETLLKQNDPAAAAALDELDKAIEALADTASATTHLSSTSLDSSEL*
AnnotationID:123GeneID:113
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 17:05:15
Gene Name:
Confidence Code:2
GeneProduct:sensor/response regulator hybrid
Cell Localization:()
Synonyms:PA0928, lemA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642, cd00156
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Similar to two component histidine sensor kinase GacS from a number of Pseudomonas spp.






 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase. Score: 173, 9e-44
cd00156, REC, Signal receiver domain; originally thought to be... Score: 109, 2e-24






   
Genomic Context:






   
Comment:


















    ReferenceID:14055




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17371




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:113
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
216
                           PA0928_tr
                           translation of PA0928
                           925
                           99.99
                           99.99
                           0
                           4605.0
     

     
     
15613
                           gb|AAG04317.1|AE004527_4
                           (AE004527) sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
                           925
                           99.89
                           99.99
                           0
                           4602.0
     

     
     
15614
                           gb|AAB86557.1|
                           (AF030352) two component sensor [Pseudomonas aeruginosa]
                           925
                           99.89
                           99.99
                           0
                           4602.0
     

     
     
15615
                           gb|AAG13658.1|AF246292_1
                           (AF246292) sensor kinase GacS [Pseudomonas fluorescens]
                           931
                           69.81
                           81.20
                           20
                           3199.0
     

     
     
15618
                           gb|AAA87840.1|
                           (U30858) putative sensor kinase; regulatory protein for production of antifungal antibiotics [Pseudomonas fluorescens]
                           931
                           69.49
                           81.20
                           20
                           3191.0
     

     






      

          
GC ORFID: 43115How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0928Glimmer Score: 

          
Start: 318102Stop: 315325

          
Length: 2778


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0928 translation of PA0928Homolog Bit Score 1778.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5932 (ORF: BLASTX 1177.0), t_PA0928 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTTCAAGGATCTCGGCATCAAGGGGCGCGTACTGCTGCTCACCCTGCTCCCCACCAGCCTGCTGGCGATG 
GTGCTTGGCGGTTACTTCACCTGGGTCCAGCTGTCCGACATGCGCGCCCAGTTGATCGAGCGCGGGCAACTG 
ATCGCCGAACAACTGGCGCCGCTGGCCGCCACCGCGCTGGCGCGAAAGGATACCGCCGTGCTCAACCGCATC 
GCCAACGAGGCGCTGGACCAACCGGACGTGCGCGCGGTGACCTTCCTCGACGCCCGCCAGGAACGCCTCGCC 
CATGCCGGGCCAAGCATGCTCACCGTCGCCCCGGCCGGCGACGCCAGCCATCTGAGCATGTCCACCGAACTG 
GACACCACGCACTTCCTGCTACCGGTTCTTGGCCGCCACCACAGCCTGTCCGGCGCCACCGAGCCTGACGAC 
GAGCGCGTACTCGGCTGGGTCGAACTGGAACTGTCGCACCACGGGACCCTGCTGCGCGGATATCGCAGCCTG 
TTCACCAGCCTCTTGCTGATCGCCGCCGGCCTCGGCGTCACCGCCCTCCTCGCCCTGCGCATGAGCCGCGCG 
ATCAACGCGCCGCTGGAACTGATCAGCCAGGGCGTCGCCCAGCTCAAGGAAGGCCGCATGGAAACCCGCCTG 
CCACCGATGGGCAGCAACGAGCTGGACGAACTGGCCTCCGGCATCAACCGCATGGCGGAAACGCTGCAGAGC 
GCCCAGGAGGAAATGCAGCACAACATCGACCAGGCCACCGAGGACGTACGCCAGAACCTGGAAACCATCGAG 
ATCCAGAACATCGAGCTGGACCTGGCGCGCAAGGAGGCCCTGGAGGCGAGCAGGATCAAGTCCGAGTTCCTC 
GCCAACATGAGCCACGAGATCCGCACCCCGCTCAACGGCATCCTCGGTTTCACCAACCTGCTGCAGAAGAGC 
GAGCTCAGCCCGCGCCAGCAGGACTACCTCACGACCATCCAGAAATCGGCGGAAAGCCTGCTGGGGATCATC 
AACGAGATCCTCGACTTCTCGAAGATCGAGGCCGGCAAGCTGGTTCTGGAAAACCTCCCCTTCAATCTCCGC 
GACCTGATCCAGGACGCCCTGACCATGCTGGCTCCGGCCGCCCACGAGAAGCAACTGGAACTGGTCAGCCTG 
GTCTACCGGGATACCCCGATCCAATTGCAGGGCGACCCGCAGCGGCTGAAGCAGATCCTCACCAACCTGGTC 
GGCAACGCCATCAAGTTCACCCAGGGCGGCACCGTCGCCGTACGCGCCATGCTCGAGGACGAAAGCGACGAC 
CGCGCGCAGCTGCGGATCAGCGTACAGGACACCGGTATCGGCCTCTCCGAGGAGGACCAGCAAGCCTTGTTC 
AAGGCCTTCAGCCAGGCCGACAACTCACTGTCGCGGCAAGCCGGTGGCACCGGCCTGGGCCTGGTGATCTCC 
AAGCGCCTGATCGAGCAGATGGGCGGCGAGATCGGCGTCGACAGTACGCCTGGGGAAGGTGCCGAATTCTGG 
ATCAGCCTGAGTCTGCCGAAAAGTCGCGACGACAACGAGGAGCCAGGCGCCTCCTGGGCCGCGGGCCAGCGC 
GTGGCGCTGCTCGAACCGCAGGAGCTGACGCGCCGCTCGCTGCACCACCAGCTCACCGACTTCGGCCTGGAA 
GTGAGCGAATTCGCCGACCTCGACAGCCTCCAGGAAAGCCTGCGCAACCCGCCGCCCGGCCAGTTGCCGATC 
AGCCTGGCGGTGCTCGGCGTCTCGGCCGCGATCCATCCGCCGGAAGAGCTGAGCCAGTCGTTCTGGGAATTC 
GAACGGCTCGGCTGCAAGACCCTGGTGCTCTGCCCGACCACCGAGCAGGCGCAATACCACGCGACCCTGCCC 
GACGAACAGGTCGAGGCCAAGCCCGCCTGCACCCGCAAGCTGCAACGCAAGCTGCAGGAGTTGCTTCAAGTC 
CGCCCGACGCGCAGCGACAAGCCCCACGCCATGGTTTCCGGACGGCCGCCACGGCTGCTCTGCGTCGACGAC 
AACCCGGCCAACCTGCTGCTGGTGCAGACCCTGCTCAGCGACCTCGGCGCCCAGGTCACCGCGGTGGACAGC 
GGCTACGCGGCCCTCGAGGTAGTGCAGCGCGAGCGCTTCGACCTGGTCTTCATGGACGTGCAGATGCCCGGC 
ATGGACGGCCGCCAGGCCACCGAGGCGATCCGCCGCTGGGAGGCCGAGCGGGAAGTCAGCCCGGTGCCGGTG 
ATCGCGCTCACCGCACATGCGCTTTCCAACGAGAAGCGCGCATTGCTGCAGGCCGGCATGGACGACTACCTG 
ACCAAGCCGATCGACGAGCAGCAATTGGCCCAGGTAGTGCTGAAGTGGACGGGACTGAGCCTGGGCCAGTCG 
CTGGCCAGCATGAGCCGTGCGCCGCAGCTCGGCCAGTTGAGCGTGCTCGACCCCGAGGAAGGGCTGCGCCTG 
GCCGCCGGCAAGGCCGACCTCGCCGCCGACATGCTGGCGATGCTGCTGGCCTCGCTGGCGGCGGACCGCCAG 
GCGATTCGCCAGGCCCGCGACAACGACGACCGCACCGCTTTGCTCGAGAGGGTCCACCGGCTGCATGGCGCC 
ACCCGCTACTGTGGCGTGCCGCAGTTGCGCGCGGCCTGCCAGACCAGCGAAACCCTGCTCAAGCAGAACGAT 
CCGGCGGCGGCCGCGGCCCTGGACGAGCTGGACAAGGCCATCGAGGCCCTGGCCGACACTGCCTCGGCCACC 
ACCCACCTGTCTTCCACCAGCCTCGACTCCAGCGAACTCTGA