ViewGene
Locus Name:
GeneID:
Location:

GeneID:1128
TrivialName: PA14_31730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31730
PAO1 Ortholog Locus:PA2539
Sequence Length:1314
Protein Length:437
Start: 2759882
Stop: 2761195
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05927.1|AE004681_9 (AE004681) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 432/437 (98%), Positives = 432/437 (98%)
Sequence:
GTGCTCTGGCTGCTGTTCCTCGGCCCGTTCTTCTTCGCCAGCTATGGCCTGGCCAACTGGTTGACCAGCCAG
CGCGGCGACGTCGGCAGCCTGGTCTTCGACTGGGAACGCGGGATGCCGCTGTGGCCCTGGACCATCCTGCCG
TACTGGTCGATCGACCTGCTCTACGGCCTGTCGCTGTTGTTGCCGCGGGACAAGCGCGAGCTGGACACCCAC
TGCCTGCGCCTGCTCAGCGCCCAGGTGCTGTCGGTGACCTGCTTCCTGCTGTTCCCCCTGCGCTTCACCTTC
GAACGGCCGGAACTGGGCGGCGTGTTCGGCTGGCTGTTCGACGTGTTGATGGGGTTCGACAAACCGTACAAC
CAGGCACCGTCGCTGCACATCGCCCTGCTGGTAGTGCTCTGGGTCTGCTACGCGCGCTACGCCAGCGGCGCC
TGGCGCTGGCTGCTGCATGGCTGGTTCGCGCTGATCGGGCTGTCGGTGCTGACCACCTGGCAGCACCATTTC
ATCGACGTGCCCACCGGCGCGCTGGCCGGTTGGCTGTGCGTCTGGCTGTGGCCGCAGGCGCAGCCCGCGCCG
TTCGCCCGCGCCAGCCTGAGCCGCGACCGGCAACGGCGGCGGCTGGCTGCTCGCTACGGCCTCGGCGCGCTG
GCCTGCGCCGCCGTCGCCTTTGCCGTCGGCGGTGCGGCGTTGTGGCTGTGCTGGCCGGCGCTGGCGCTGGCG
CTGGTGGCGCTGAACTACCTGCTGTTCGGCGCCGCCGGCTTCCAGAAGGGCAGCACTGGCCGCCTGAGCGCC
GCCGTGCGCTGGCTGCTGGCGCCATATCTGCTTGGCGCGTGGATCAACGCCTGGCTCTGGACCCGTCGCCGG
CCGCAGCCGGACGAGGTGCTGCCGGGCCTCTGGCTGGGGCGCCTGCCGTCGTCCGCGGAACTGGCCGACGGC
CGCTTCCGCGCATTGCTCGACGCTACCGCCGAACTTTCCTGCGAGCCGCAGGGGCTGGCCTATCGCAGCCTG
CCGTTGCTCGACCTGGTCGCGCCGGACGTCGAGGACTGCCGGCGCGCCGCCGCGCTGATCGACGAACTGCTG
GCGCAAGGGCCGCTGCTGGTGGCCTGTGCCCTGGGCTATTCGCGCAGCGCCACGCTGGTTGCCGCCTGGCTG
CTGCTCAGCGGCCGCGCGGCGGACGTCGAGTCGGCCGTGGCGGTGTTACGCCGGGCGCGACCGCAAGTGCTG
CTGGGCGAGGCCCAGCGGCGGACCCTCGCGGCGTTGAGCGGGAGCGTGCCGGAGCCATCGGCGGAACTGGGC
GAGGTGCGCCATGCCTGA
Translation:
MLWLLFLGPFFFASYGLANWLTSQRGDVGSLVFDWERGMPLWPWTILPYWSIDLLYGLSLLLPRDKRELDTH
CLRLLSAQVLSVTCFLLFPLRFTFERPELGGVFGWLFDVLMGFDKPYNQAPSLHIALLVVLWVCYARYASGA
WRWLLHGWFALIGLSVLTTWQHHFIDVPTGALAGWLCVWLWPQAQPAPFARASLSRDRQRRRLAARYGLGAL
ACAAVAFAVGGAALWLCWPALALALVALNYLLFGAAGFQKGSTGRLSAAVRWLLAPYLLGAWINAWLWTRRR
PQPDEVLPGLWLGRLPSSAELADGRFRALLDATAELSCEPQGLAYRSLPLLDLVAPDVEDCRRAAALIDELL
AQGPLLVACALGYSRSATLVAAWLLLSGRAADVESAVAVLRRARPQVLLGEAQRRTLAALSGSVPEPSAELG
EVRHA*
AnnotationID:1137GeneID:1128
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 21:09:20
Gene Name:
Confidence Code:3
GeneProduct:putative dual specificity phosphatase
Cell Localization:()
Synonyms:PA2539
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2453,pfam00782
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58957.1| (AE016876) dual specificity phosphatase, catalytic domain protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 451

 Score =  571 bits (1471), Expect = e-162
 Identities = 273/421 (64%), Positives = 321/421 (76%), Gaps = 5/421 (1%)

>gb|AAM84697.1|AE013714_13 (AE013714) putative enzyme [Yersinia pestis KIM]
          Length = 439

 Score =  326 bits (835), Expect = 2e-88
 Identities = 190/432 (43%), Positives = 255/432 (59%), Gaps = 27/432 (6%)








 
Structural Features:
COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
CD-Length = 180 residues, 100.0% aligned
Score =  104 bits (259), Expect = 3e-23
Identities = 40/180 (22%), Positives = 60/180 (33%), Gaps = 2/180 (1%)

pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
CD-Length = 139 residues,  95.0% aligned
Score = 66.0 bits (161), Expect = 9e-12
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Ser/Thr and Tyr protein phosphatases. 








   
Genomic Context:






   
Comment:


















    ReferenceID:14287




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19401




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33098




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1128_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1128
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2024
                           PA2539_tr
                           translation of PA2539
                           437
                           98.85
                           98.85
                           0
                           2282.0
     

     
     
68362
                           gb|AAG05927.1|AE004681_9
                           (AE004681) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           437
                           98.62
                           98.85
                           0
                           2279.0
     

     
     
68363
                           gb|AAO58957.1|
                           (AE016876) dual specificity phosphatase, catalytic domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           461
                           59.86
                           70.71
                           34
                           1471.0
     

     
     
68364
                           gb|AAM35405.1|
                           (AE011678) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           454
                           57.48
                           67.84
                           26
                           1359.0
     

     
     
68365
                           gb|AAM39817.1|
                           (AE012147) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           448
                           56.25
                           66.74
                           15
                           1281.0
     

     






      

          
GC ORFID: 44130How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2539Glimmer Score: 

          
Start: 2194044Stop: 2192731

          
Length: 1314


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2539 translation of PA2539Homolog Bit Score 883.0

          
Other Homologs:  t_PA2539 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCTCTGGCTGCTGTTCCTCGGCCCGTTCTTCTTCGCCAGCTATGGCCTGGCCAACTGGTTGACCAGCCAG 
CGCGGCGACGTCGGCAGCCTGGTCTTCGACTGGGAACGCGGGATGCCGCTGTGGCCCTGGACCATCCTGCCG 
TACTGGTCGATCGACCTGCTCTACGGCCTGTCGCTGTTGTTGCCGCGGGACAAGCGCGAGCTGGACACCCAC 
TGCCTGCGCCTGCTCAGCGCCCAGGTGCTGTCGGTGACCTGCTTCCTGCTGTTCCCCCTGCGCTTCACCTTC 
GAACGGCCGGAACTGGGCGGCGTGTTCGGCTGGCTGTTCGACGTGTTGATGGGGTTCGACAAACCGTACAAC 
CAGGCACCGTCGCTGCACATCGCCCTGCTGGTAGTGCTCTGGGTCTGCTACGCGCGCTACGCCAGCGGCGCC 
TGGCGCTGGCTGCTGCATGGCTGGTTCGCGCTGATCGGGCTGTCGGTGCTGACCACCTGGCAGCACCATTTC 
ATCGACGTGCCCACCGGCGCGCTGGCCGGTTGGCTGTGCGTCTGGCTGTGGCCGCAGGCGCAGCCCGCGCCG 
TTCGCCCGCGCCAGCCTGAGCCGCGACCGGCAACGGCGGCGGCTGGCTGCTCGCTACGGCCTCGGCGCGCTG 
GCCTGCGCCGCCGTCGCCTTTGCCGTCGGCGGTGCGGCGTTGTGGCTGTGCTGGCCGGCGCTGGCGCTGGCG 
CTGGTGGCGCTGAACTACCTGCTGTTCGGCGCCGCCGGCTTCCAGAAGGGCAGCACTGGCCGCCTGAGCGCC 
GCCGTGCGCTGGCTGCTGGCGCCATATCTGCTTGGCGCGTGGATCAACGCCTGGCTCTGGACCCGTCGCCGG 
CCGCAGCCGGACGAGGTGCTGCCGGGCCTCTGGCTGGGGCGCCTGCCGTCGTCCGCGGAACTGGCCGACGGC 
CGCTTCCGCGCATTGCTCGACGCTACCGCCGAACTTTCCTGCGAGCCGCAGGGGCTGGCCTATCGCAGCCTG 
CCGTTGCTCGACCTGGTCGCGCCGGACGTCGAGGACTGCCGGCGCGCCGCCGCGCTGATCGACGAACTGCTG 
GCGCAAGGGCCGCTGCTGGTGGCCTGTGCCCTGGGCTATTCGCGCAGCGCCACGCTGGTTGCCGCCTGGCTG 
CTGCTCAGCGGCCGCGCGGCGGACGTCGAGTCGGCCGTGGCGGTGTTACGCCGGGCGCGACCGCAAGTGCTG 
CTGGGCGAGGCCCAGCGGCGGACCCTCGCGGCGTTGAGCGGGAGCGTGCCGGAGCCATCGGCGGAACTGGGC 
GAGGTGCGCCATGCCTGA