ViewGene
Locus Name:
GeneID:
Location:

GeneID:1127
TrivialName: PA14_38580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38580
PAO1 Ortholog Locus:PA2004
Sequence Length:1392
Protein Length:463
Start: 3441918
Stop: 3443309
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05392.1|AE004626_11 (AE004626) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 461/463 (99%), Positives = 461/463 (99%)
Sequence:
ATGAGCGTGATCATCGCCCTTGCCGCCCTGGGCCTGCTGATGCTGGCCGCCTACCGGGGCTACAGCGTCATC
CTGTTCGCCCCCCTCGCCGCCCTCGGCGCCGTCCTGCTCACCGATCCCAGCGCGGTCGCGCCGACCTTCACC
GGGGTGTTCATGGAGAAGATGGTCGGTTTCATCAAGCTCTACTTCCCGGTTTTCCTGCTTGGCGCGGTGTTC
GGCAAGCTGATCGAGCTGGCCGGCTTCTCCCGCTCCATCGTCGCGGCGGCGATCCGCCTGCTCGGCACCCGC
CAGGCGATGCTGGTGATCGTACTGGTCTGCGCGCTGCTCACCTACGGCGGCGTCTCGCTGTTCGTGGTGGTG
TTCGCGGTCTACCCGTTCGCCGCGGAGATGTTCCGCCAGAGCGACATCCCCAAGCGGTTGATTCCGGCGACC
ATCGCCCTCGGCGCGTTTTCCTTCACCATGGACGCGCTGCCCGGCACCCCGCAGATCCAGAACATCATCCCC
TCGACCTTCTTCGGCACCCACGCCTGGGCCGCGCCCTGGCTCGGCACCCTCGGCGCGCTGTTCGTCTTCGCC
GTGGGCATGCTCTACCTGCGACGCCAGGCGAACAAGGCGCGGCGCAACGGCGAAGGCTACGGCAGCGACCTG
CGCAACGAGCCGGAGACCGCCGATGACCTGCGCCTGCCGAATCCCTGGCTGGCGCTCTCGCCGCTGGTGCTG
GTCGGGGTCGCCAACCTGCTGTTCACCCACTGGATCCCGCAATGGTACGGCCAGGTCCATACCCTGCAACTG
GCCGGCATGGCCACGCCGTTGCAGACCGAGGTCGGCAAGCTCACCGCGATCTGGGCAGTGCAGGCGGCCCTG
CTGCTGGGCATCCTGCTGGTGCTGGCGAGCGGCTTCGCGGCGATCCGCAGCCGCCTCGCCGAAGGCACCCGC
AGCGCGGTGGCCGGCTCGCTGCTGGCGGCGATGAACACCGCCTCGGAATACGGCTTCGGTGCGGTGATCGCC
TCGCTGCCGGGCTTCCTGGTGCTGGCCGACGCGCTCAAGAGCATTCCCAATCCGCTGGTCAACGAAGCGATC
ACCGTCACCCTGCTGGCCGGCATCACCGGTTCCGCGTCGGGCGGCATGAGCATCGCCCTGGCGGCGATGTCC
GATACCTTCATCGCCGCCGCCAACGCCGCGCAGATCCCCCTGGAAGTCCTCCACCGGGTCGCCGCCATGGCC
AGCGGCGGGATGGATACCCTGCCGCACAACGGCGCGGTGATCACCCTCCTGGCGGTCACCGGCCTGACCCAT
CGGGAGGCGTACAAGGACATTTTCGGCATTACCCTGATcaagaCCCTGGCGGTGTTCTTCGTCATCGGACTG
TTCTACCCCaCCGGCCTGGTCTGA
Translation:
MSVIIALAALGLLMLAAYRGYSVILFAPLAALGAVLLTDPSAVAPTFTGVFMEKMVGFIKLYFPVFLLGAVF
GKLIELAGFSRSIVAAAIRLLGTRQAMLVIVLVCALLTYGGVSLFVVVFAVYPFAAEMFRQSDIPKRLIPAT
IALGAFSFTMDALPGTPQIQNIIPSTFFGTHAWAAPWLGTLGALFVFAVGMLYLRRQANKARRNGEGYGSDL
RNEPETADDLRLPNPWLALSPLVLVGVANLLFTHWIPQWYGQVHTLQLAGMATPLQTEVGKLTAIWAVQAAL
LLGILLVLASGFAAIRSRLAEGTRSAVAGSLLAAMNTASEYGFGAVIASLPGFLVLADALKSIPNPLVNEAI
TVTLLAGITGSASGGMSIALAAMSDTFIAAANAAQIPLEVLHRVAAMASGGMDTLPHNGAVITLLAVTGLTH
REAYKDIFGITLIKTLAVFFVIGLFYPTGLV*
AnnotationID:1136GeneID:1127
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 18:06:56
Gene Name:
Confidence Code:3
GeneProduct:putative H+/gluconate symporter
Cell Localization:()
Synonyms:PA2004
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative D-beta-hydroxybutyrate permease
Functional Category Confidence Code:5
COGs:COG2610
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68682.1|AE016497_7 (AE016785) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 463

 Score =  792 bits (2045), Expect = 0.0
 Identities = 407/463 (87%), Positives = 432/463 (93%)

>emb|CAD16225.1| (AL646070) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia
           solanacearum]
          Length = 466

 Score =  677 bits (1748), Expect = 0.0
 Identities = 345/466 (74%), Positives = 399/466 (85%), Gaps = 3/466 (0%)

>gb|AAP09141.1| (AE017005) D-beta-hydroxybutyrate permease [Bacillus cereus ATCC
           14579]
          Length = 479

 Score =  508 bits (1307), Expect = e-143
 Identities = 262/478 (54%), Positives = 340/478 (71%), Gaps = 16/478 (3%)








 
Structural Features:
COG2610, GntT, H+/gluconate symporter and related permeases 
[Carbohydrate transport and metabolism / Amino acid transport and metabolism]
CD-Length = 442 residues,  98.2% aligned
Score =  251 bits (643), Expect = 1e-67
Identities = 106/457 (23%), Positives = 165/457 (36%), Gaps = 25/457 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2257




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19399




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32723




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1127_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1127
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2023
                           PA2004_tr
                           translation of PA2004
                           463
                           99.56
                           99.56
                           0
                           2281.0
     

     
     
68346
                           gb|AAG05392.1|AE004626_11
                           (AE004626) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           463
                           99.56
                           99.56
                           0
                           2281.0
     

     
     
68347
                           gb|AAN68682.1|AE016497_7
                           (AE016785) membrane protein, putative [Pseudomonas putida KT2440]
                           463
                           87.90
                           93.30
                           0
                           2045.0
     

     
     
68348
                           emb|CAD16225.1|
                           (AL646070) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           466
                           74.03
                           85.62
                           3
                           1751.0
     

     
     
68349
                           emb|CAB15926.2|
                           (Z99123) yxjC [Bacillus subtilis subsp. subtilis str. 168]
                           472
                           58.05
                           74.15
                           9
                           1368.0
     

     






      

          
GC ORFID: 44129How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2004Glimmer Score: 

          
Start: 1511993Stop: 1510602

          
Length: 1392


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2004 translation of PA2004Homolog Bit Score 883.0

          
Other Homologs:  t_PA2004 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGTGATCATCGCCCTTGCCGCCCTGGGCCTGCTGATGCTGGCCGCCTACCGGGGCTACAGCGTCATC 
CTGTTCGCCCCCCTCGCCGCCCTCGGCGCCGTCCTGCTCACCGATCCCAGCGCGGTCGCGCCGACCTTCACC 
GGGGTGTTCATGGAGAAGATGGTCGGTTTCATCAAGCTCTACTTCCCGGTTTTCCTGCTTGGCGCGGTGTTC 
GGCAAGCTGATCGAGCTGGCCGGCTTCTCCCGCTCCATCGTCGCGGCGGCGATCCGCCTGCTCGGCACCCGC 
CAGGCGATGCTGGTGATCGTACTGGTCTGCGCGCTGCTCACCTACGGCGGCGTCTCGCTGTTCGTGGTGGTG 
TTCGCGGTCTACCCGTTCGCCGCGGAGATGTTCCGCCAGAGCGACATCCCCAAGCGGTTGATTCCGGCGACC 
ATCGCCCTCGGCGCGTTTTCCTTCACCATGGACGCGCTGCCCGGCACCCCGCAGATCCAGAACATCATCCCC 
TCGACCTTCTTCGGCACCCACGCCTGGGCCGCGCCCTGGCTCGGCACCCTCGGCGCGCTGTTCGTCTTCGCC 
GTGGGCATGCTCTACCTGCGACGCCAGGCGAACAAGGCGCGGCGCAACGGCGAAGGCTACGGCAGCGACCTG 
CGCAACGAGCCGGAGACCGCCGATGACCTGCGCCTGCCGAATCCCTGGCTGGCGCTCTCGCCGCTGGTGCTG 
GTCGGGGTCGCCAACCTGCTGTTCACCCACTGGATCCCGCAATGGTACGGCCAGGTCCATACCCTGCAACTG 
GCCGGCATGGCCACGCCGTTGCAGACCGAGGTCGGCAAGCTCACCGCGATCTGGGCAGTGCAGGCGGCCCTG 
CTGCTGGGCATCCTGCTGGTGCTGGCGAGCGGCTTCGCGGCGATCCGCAGCCGCCTCGCCGAAGGCACCCGC 
AGCGCGGTGGCCGGCTCGCTGCTGGCGGCGATGAACACCGCCTCGGAATACGGCTTCGGTGCGGTGATCGCC 
TCGCTGCCGGGCTTCCTGGTGCTGGCCGACGCGCTCAAGAGCATTCCCAATCCGCTGGTCAACGAAGCGATC 
ACCGTCACCCTGCTGGCCGGCATCACCGGTTCCGCGTCGGGCGGCATGAGCATCGCCCTGGCGGCGATGTCC 
GATACCTTCATCGCCGCCGCCAACGCCGCGCAGATCCCCCTGGAAGTCCTCCACCGGGTCGCCGCCATGGCC 
AGCGGCGGGATGGATACCCTGCCGCACAACGGCGCGGTGATCACCCTCCTGGCGGTCACCGGCCTGACCCAT 
CGGGAGGCGTACAAGGACATTTTCGGCATTACCCTGATcaagaCCCTGGCGGTGTTCTTCGTCATCGGACTG 
TTCTACCCCaCCGGCCTGGTCTGA