ViewGene
Locus Name:
GeneID:
Location:

GeneID:1126
TrivialName: PA14_52240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52240
PAO1 Ortholog Locus:PA0930
Sequence Length:1338
Protein Length:445
Start: 4634900
Stop: 4633563
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04319.1|AE004527_6 (AE004527) two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 441/445 (99%), Positives = 444/445 (99%)
Sequence:
ATGCCCAACCGCCATTCGCTGTTCTGGCGCCTGGCCCTGGTGCTGGTGGCGTTCTTCCTGCTATCGGTATGG
CTGTCCTGGACCTGGGGACGTAGTGCCGAACTGAAGGGTTACTACCTGTCCGCCGAAGCCCGCTCCGCCTTG
GCGGATTATGCGCGGCGAGCCGAGCGTGCCTGGCTCGACGATGGCCGCGAGGGCATCGACCGTTGGCTGGCC
GAGCCGCGCCAGCAGGCGCTGGACTGGGTGGTCGTGCTCGACGGACGGCTGCAATCGCTGGGCAGTCGTCCG
CTCACCACGGAGGAAGCCGAGCGCCTGACTTTCCTGCGGGGCGTCGACTGGCCGATGAGTTCCCGCTCGCTG
TCGCGGCCATTCATCAACCTGCGCTTCCCCGAACATCCGGAGCAAGGCAGGGTGGTCCTGCGTCTTCCCGCC
GAGTTCGTCCCTCCCGGCTTGTCGCCGGCCAAGCGCCTGGTCACCCACGGCCTGGTGCCGGCCGGGCTGGCC
CTGCTGCTGGGAGTGTTGCTGTATCGGCGCTGGGTAGTGCCGCTGGGACGCCTGCGAGCGCAGGCCAATGCC
CTGCGCGGCAACGACCTGACGGCGCGTACGCAGGCAGAGATCAGCCGGCGCAGCGACGAGCTGGGCGATCTG
GGGCGGGCGTTCGACCATATGGCCGAGCGACTCGACGAGCACATGGTGTTGCAGCGCCAACTGCTCCGCGAT
CTCTCCCACGAGCTGCGCACGCCGCTGGCGCGCCTGCAGGTGGCGGCAGAGGGCACGCTGTCCGCGCAGCTC
CTGCGCGAGCGCCTGGAGCAGGAGGTACAGGGCATGCAGCAACTGGTGGACAACACCCTGGAGCTGGCCTGG
ATGGACACCGAACGCCCGGTATTGGCGCTGGAGGACATTTCCATCCCGGCGTTATGGGACCTGCTGGTGGAG
AACGCACGCTTCGAAAGCGGCTGGGCCGCCGAGCGGTTCCGCAGCGATCTGCCCGAGGATTGTGTCGTGCGT
GGCAACCTCAATGCACTTGCCCAGGCCCTGGAGAACCTGCTGCGCAACGCCATCCGGCATTCGCCGGAGGGC
GGCGTGATCCGCCTGCATGGTCGGCGCGAAGGAAGTTGCTGGTGGCTTTGCCTGGAAGACCAGGGCGAGGGT
GTGGCCGAGCACCAGTTGGAGACCATCTTCCGCCCGTTCACCCGACTGTCTTCGGCACGTACCGGCAAGGGC
TTCGGCCTGGGACTGAGCATTGCCCGTCGCGCCGTGGTGCTCCAGGGCGGCCGCCTATGGGCGGAAGCCGCC
GATCCGGGGCTGCGCCTGTGCCTGGTGCTGCCTTCTGCCTAG
Translation:
MPNRHSLFWRLALVLVAFFLLSVWLSWTWGRSAELKGYYLSAEARSALADYARRAERAWLDDGREGIDRWLA
EPRQQALDWVVVLDGRLQSLGSRPLTTEEAERLTFLRGVDWPMSSRSLSRPFINLRFPEHPEQGRVVLRLPA
EFVPPGLSPAKRLVTHGLVPAGLALLLGVLLYRRWVVPLGRLRAQANALRGNDLTARTQAEISRRSDELGDL
GRAFDHMAERLDEHMVLQRQLLRDLSHELRTPLARLQVAAEGTLSAQLLRERLEQEVQGMQQLVDNTLELAW
MDTERPVLALEDISIPALWDLLVENARFESGWAAERFRSDLPEDCVVRGNLNALAQALENLLRNAIRHSPEG
GVIRLHGRREGSCWWLCLEDQGEGVAEHQLETIFRPFTRLSSARTGKGFGLGLSIARRAVVLQGGRLWAEAA
DPGLRLCLVLPSA*
AnnotationID:1135GeneID:1126
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 17:05:50
Gene Name:
Confidence Code:2
GeneProduct:two-component sensor
Cell Localization:()
Synonyms:PA0930, pirS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:histidine protein kinase
Functional Category Confidence Code:5
COGs:COG0642
Secondary Functional Category(ies):Transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Two-component System
Homology:






 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase. Score: 125, 9e-30






   
Genomic Context:
pirRSA (Pseudomonas aeruginosa) 






   
Comment:


















    ReferenceID:2255




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19397




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1126
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2021
                           PA0930_tr
                           translation of PA0930
                           445
                           99.10
                           99.77
                           0
                           2281.0
     

     
     
68339
                           gb|AAG04319.1|AE004527_6
                           (AE004527) two-component sensor [Pseudomonas aeruginosa PAO1]
                           445
                           99.10
                           99.77
                           0
                           2281.0
     

     
     
68340
                           gb|AAC06223.1|
                           (AF051692) histidine protein kinase [Pseudomonas aeruginosa]
                           459
                           93.46
                           94.55
                           15
                           2186.0
     

     
     
68341
                           gb|AAN67273.1|AE016353_13
                           (AE016780) sensor histidine kinase [Pseudomonas putida KT2440]
                           458
                           53.71
                           67.46
                           13
                           1214.0
     

     
     
68342
                           gb|AAN66160.1|AE016244_1
                           (AE016776) sensor protein PfeS [Pseudomonas putida KT2440]
                           446
                           53.13
                           68.60
                           5
                           1184.0
     

     






      

          
GC ORFID: 44128How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0930Glimmer Score: 

          
Start: 319007Stop: 320344

          
Length: 1338


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0930 translation of PA0930Homolog Bit Score 883.0

          
Other Homologs:  t_PA2687 (ORF: BLASTX 448.0), t_PA0930 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAACCGCCATTCGCTGTTCTGGCGCCTGGCCCTGGTGCTGGTGGCGTTCTTCCTGCTATCGGTATGG 
CTGTCCTGGACCTGGGGACGTAGTGCCGAACTGAAGGGTTACTACCTGTCCGCCGAAGCCCGCTCCGCCTTG 
GCGGATTATGCGCGGCGAGCCGAGCGTGCCTGGCTCGACGATGGCCGCGAGGGCATCGACCGTTGGCTGGCC 
GAGCCGCGCCAGCAGGCGCTGGACTGGGTGGTCGTGCTCGACGGACGGCTGCAATCGCTGGGCAGTCGTCCG 
CTCACCACGGAGGAAGCCGAGCGCCTGACTTTCCTGCGGGGCGTCGACTGGCCGATGAGTTCCCGCTCGCTG 
TCGCGGCCATTCATCAACCTGCGCTTCCCCGAACATCCGGAGCAAGGCAGGGTGGTCCTGCGTCTTCCCGCC 
GAGTTCGTCCCTCCCGGCTTGTCGCCGGCCAAGCGCCTGGTCACCCACGGCCTGGTGCCGGCCGGGCTGGCC 
CTGCTGCTGGGAGTGTTGCTGTATCGGCGCTGGGTAGTGCCGCTGGGACGCCTGCGAGCGCAGGCCAATGCC 
CTGCGCGGCAACGACCTGACGGCGCGTACGCAGGCAGAGATCAGCCGGCGCAGCGACGAGCTGGGCGATCTG 
GGGCGGGCGTTCGACCATATGGCCGAGCGACTCGACGAGCACATGGTGTTGCAGCGCCAACTGCTCCGCGAT 
CTCTCCCACGAGCTGCGCACGCCGCTGGCGCGCCTGCAGGTGGCGGCAGAGGGCACGCTGTCCGCGCAGCTC 
CTGCGCGAGCGCCTGGAGCAGGAGGTACAGGGCATGCAGCAACTGGTGGACAACACCCTGGAGCTGGCCTGG 
ATGGACACCGAACGCCCGGTATTGGCGCTGGAGGACATTTCCATCCCGGCGTTATGGGACCTGCTGGTGGAG 
AACGCACGCTTCGAAAGCGGCTGGGCCGCCGAGCGGTTCCGCAGCGATCTGCCCGAGGATTGTGTCGTGCGT 
GGCAACCTCAATGCACTTGCCCAGGCCCTGGAGAACCTGCTGCGCAACGCCATCCGGCATTCGCCGGAGGGC 
GGCGTGATCCGCCTGCATGGTCGGCGCGAAGGAAGTTGCTGGTGGCTTTGCCTGGAAGACCAGGGCGAGGGT 
GTGGCCGAGCACCAGTTGGAGACCATCTTCCGCCCGTTCACCCGACTGTCTTCGGCACGTACCGGCAAGGGC 
TTCGGCCTGGGACTGAGCATTGCCCGTCGCGCCGTGGTGCTCCAGGGCGGCCGCCTATGGGCGGAAGCCGCC 
GATCCGGGGCTGCGCCTGTGCCTGGTGCTGCCTTCTGCCTAG