ViewGene

Locus Name:
GeneID:
Location:

GeneID:1125
TrivialName: PA14_21000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21000
PAO1 Ortholog Locus:PA3329
Sequence Length:1329
Protein Length:442
Start: 1808457
Stop: 1807129
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06717.1|AE004755_4 (AE004755) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 438/442 (99%), Positives = 439/442 (99%)
Sequence:
ATGATGGCCGAGATACGACGCCCGCTGTCCGCGGTGGAACGCTGGTACTGGCTCAGCGACCAGTTCTCCGCG
CTGAACGTGATTTCCCGGGTGCGGGTCCATGGCCAGTTGTCCATCGACGACCTGCGCCGCGGCCTCGACGCG
CTGCAGGCGCGGCATCCGCTGCTGCGCGCGCGGATCGAGCACGATGCCGGGTTCGACCCGCGCTGGGTGCCC
TGCGAGCGGCCCATCCCGCTGCGCGAGGTGCGCGGTGGTGGCGAGGAGCAATGGCTGCGGGAAATCAACGAG
CGCGAATTGCCGGAACGCATCGATCCGGACAGCGGGCCACTGATCCGTACCGTGGCGATCACCACCGACGCC
GGTGCCCACGACCTGCTGGTCGTGGTACCGCACATCATCGCCGACGGCACTACCGTGCTGACCCTCGCCGAA
CAATGGCTGGCCCTGGCCGCCGACCCCGCCGCGCAACCCTGGACCGCCAGCGCCCTGCCGCCGGCGGAGGAT
CTGCGTCCGCGCCGCTTCACCGGCGACGAAGGCGCGGCGCGCCTGGCCGAGCAGACCGCCCAGGACGAAGCG
CTGGTCGGCCGCCACCGCCCGGGCCGGATCGAGCCGAGCAACCCGGTGCCGCTGGAAGCGCGGCGTACCCGC
CTGCTGCACCGGGAGCTGGACGGCGCGCAGCTGGAACAGCTGCAACGACGCGCCCGCGAACACGGCACCACG
GTACACGGCGCGCTGACCGCGGCGCTGGCCATCGCCGCCGGCCACGACCACCAGCGCCGCCCGAGCCACATC
GCCATCGGCTCGCCGATCGACTTCCGCGACGAACTGGAGCCGCCGGTGCGCCCCGACGAAGTAGGCACCTAC
GTCGCCACGGTACCGGTGGTGCTGGACATCGCCCGACCGTTCTGGGAGGTCGCCCGCGCGCTCACCGACGAC
CTCGGCGAACGCCGTCGCCAGGGCCATCATTTCAACCTGGTCACCCTGGTCGCCAGCGCTGCGCCGCGCTGC
ATGGCCGACGCGCGGCCATTCATGGCCTTCATGGAAGCCGAAGGGCCGATCAACCTGTGCTCCTCCAACATC
GGTCGCTATCCGTTCCCCGAGCGGATCGGCGCCTTGCGCCTCTCCGACGCGCAGTTCCTCACCGGCATCTCG
GTGAACGGCTACTTCGTGGCCGCCATCAACTCCAGCCATGGCCGGCTGTTCTGGAACTTCACCTATATCGAC
GAAGCGGTCCCCGGCGAACGCGCCGAACGCCTGGCCGAAGATTGCCTGGGCACCCTGCTGTCGGCGATCCAC
GCCCCCCAACGATCCGCCCTCGAGGAGCAATGA
Translation:
MMAEIRRPLSAVERWYWLSDQFSALNVISRVRVHGQLSIDDLRRGLDALQARHPLLRARIEHDAGFDPRWVP
CERPIPLREVRGGGEEQWLREINERELPERIDPDSGPLIRTVAITTDAGAHDLLVVVPHIIADGTTVLTLAE
QWLALAADPAAQPWTASALPPAEDLRPRRFTGDEGAARLAEQTAQDEALVGRHRPGRIEPSNPVPLEARRTR
LLHRELDGAQLEQLQRRAREHGTTVHGALTAALAIAAGHDHQRRPSHIAIGSPIDFRDELEPPVRPDEVGTY
VATVPVVLDIARPFWEVARALTDDLGERRRQGHHFNLVTLVASAAPRCMADARPFMAFMEAEGPINLCSSNI
GRYPFPERIGALRLSDAQFLTGISVNGYFVAAINSSHGRLFWNFTYIDEAVPGERAERLAEDCLGTLLSAIH
APQRSALEEQ*
AnnotationID:1134GeneID:1125
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:47
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3329
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:2253
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19395
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32235
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1125_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1125

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2020 PA3329_tr translation of PA3329 442 99.09 99.32 0 2285.0
68338 gb|AAG06717.1|AE004755_4 (AE004755) hypothetical protein PA3329 [Pseudomonas aeruginosa PAO1] 442 99.09 99.32 0 2285.0
GC ORFID: 44127How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3329Glimmer Score:
Start: 3145475Stop: 3146803
Length: 1329
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3329 translation of PA3329Homolog Bit Score 884.0
Other Homologs: t_PA3329 (ORF: GLIMMER)
GC ORF Sequence
ATGATGGCCGAGATACGACGCCCGCTGTCCGCGGTGGAACGCTGGTACTGGCTCAGCGACCAGTTCTCCGCG
CTGAACGTGATTTCCCGGGTGCGGGTCCATGGCCAGTTGTCCATCGACGACCTGCGCCGCGGCCTCGACGCG
CTGCAGGCGCGGCATCCGCTGCTGCGCGCGCGGATCGAGCACGATGCCGGGTTCGACCCGCGCTGGGTGCCC
TGCGAGCGGCCCATCCCGCTGCGCGAGGTGCGCGGTGGTGGCGAGGAGCAATGGCTGCGGGAAATCAACGAG
CGCGAATTGCCGGAACGCATCGATCCGGACAGCGGGCCACTGATCCGTACCGTGGCGATCACCACCGACGCC
GGTGCCCACGACCTGCTGGTCGTGGTACCGCACATCATCGCCGACGGCACTACCGTGCTGACCCTCGCCGAA
CAATGGCTGGCCCTGGCCGCCGACCCCGCCGCGCAACCCTGGACCGCCAGCGCCCTGCCGCCGGCGGAGGAT
CTGCGTCCGCGCCGCTTCACCGGCGACGAAGGCGCGGCGCGCCTGGCCGAGCAGACCGCCCAGGACGAAGCG
CTGGTCGGCCGCCACCGCCCGGGCCGGATCGAGCCGAGCAACCCGGTGCCGCTGGAAGCGCGGCGTACCCGC
CTGCTGCACCGGGAGCTGGACGGCGCGCAGCTGGAACAGCTGCAACGACGCGCCCGCGAACACGGCACCACG
GTACACGGCGCGCTGACCGCGGCGCTGGCCATCGCCGCCGGCCACGACCACCAGCGCCGCCCGAGCCACATC
GCCATCGGCTCGCCGATCGACTTCCGCGACGAACTGGAGCCGCCGGTGCGCCCCGACGAAGTAGGCACCTAC
GTCGCCACGGTACCGGTGGTGCTGGACATCGCCCGACCGTTCTGGGAGGTCGCCCGCGCGCTCACCGACGAC
CTCGGCGAACGCCGTCGCCAGGGCCATCATTTCAACCTGGTCACCCTGGTCGCCAGCGCTGCGCCGCGCTGC
ATGGCCGACGCGCGGCCATTCATGGCCTTCATGGAAGCCGAAGGGCCGATCAACCTGTGCTCCTCCAACATC
GGTCGCTATCCGTTCCCCGAGCGGATCGGCGCCTTGCGCCTCTCCGACGCGCAGTTCCTCACCGGCATCTCG
GTGAACGGCTACTTCGTGGCCGCCATCAACTCCAGCCATGGCCGGCTGTTCTGGAACTTCACCTATATCGAC
GAAGCGGTCCCCGGCGAACGCGCCGAACGCCTGGCCGAAGATTGCCTGGGCACCCTGCTGTCGGCGATCCAC
GCCCCCCAACGATCCGCCCTCGAGGAGCAATGA