ViewGene
Locus Name:
GeneID:
Location:

GeneID:1123
TrivialName: PA14_14230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14230
PAO1 Ortholog Locus:PA3848
Sequence Length:1356
Protein Length:451
Start: 1217167
Stop: 1215812
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07235.1|AE004802_4 (AE004802) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 450/451 (99%), Positives = 451/451 (100%)
Sequence:
ATGAATCGCATCAAGCACCTGCTCAAGGACCTCGCCATCCTGATCCGCGCCAACCTCTGGCTGATCCCGGTG
ATCGCCGCCCTGGTCGCCGCGGTGTTCTATTTCGTCGCCCCGCCGCCGCCGATGAGCGCGACCATGGCCACC
GGCGCCGAGGGCGGCGGCTACGCCGTGTTCGCCGGCAAGCTCCGGGAAAAGCTCAAGGAGCAGGGCTTCGAA
CTGAGGCTGGTGCCCAGCGCCGGCTCGCGCGACAACCTGGAGCGCCTGCTCGGCACCGGCGAGGTCGACATC
GCCCTGGTCCAGAGCGGCCAGGAGCGCCAGCTCGAAGCCGGGCAGGCGCGCCAGTTGCAGACCCTCGGCGCG
GTCTACCAGGAGCCGCTCTGGCTGTTCCACCGCAGCAACGTGCACATCGACCAGCTCAGCGACCTGCTGCAC
CTGCGCCTGGCCATCGGCAGCGACGGCAGCGGCACCCGCGCCGCCACCGAGGCGATCCTGCAGGCCAACGAC
ATCGCCCCGGGACACTATCCGATCACCTGGGAAGCCCGCGGCGGCAACGCGGTGGTCGACGACCTGCTGGCC
GGCAAGCTGGACGCGGCGTTCATCGTCGGCCCGGCGGAGAACCCGGCGATCCAGAAATTGGCCGACAACGAC
CAGCTTCGCCTGGTCAACTTCCGCCGCAGCGCCGCCTACGAGGCGCGCCTGCCGTTCCTCAAGCGGGTCGAG
GTCGGCGAAGGCCTGCTCAACCTGCCGCGCAACGTGCCGGAACGAAACATCAGCACCCTGTCGCCGGTGGCC
ACCCTGGTGATCAACGAGCGCTTCCACCCGGCGCTGATCCCGCTGGTACTGGAAGCCGCGCGCGAGGTGATG
AAGGACGGCAGCCTGCTCGACAAGCCCGGCGCCTTCCCCAGCGCCGAGCCGCGCACCCTGCGCCTGCACGAG
GACGCCGAGCGCTACTACAAGAGCGGCCTGCCGCTGCTGCAGCGCTACCTGCCGTTCCGCATCGCCTCCCTG
GCGGACCGCTACATCATCCTGCTGATCCCGTTCATCGCCATCCTCATCCCGCTGATGAAGTCCATCGGCCCG
CTGTATCGCTGGCGCATCCGCGCGCGCATCTACCGCTGGTACCGCTACATCCGCGACATCGACCGCAAGCTC
GACAGCGGCACCGACGCCGAGCAACTGAGAAGCGAGATCGAGCGGCTGGAGAAACTGGAGAGCGAGCTGAAC
ACCGTGGAGGTGCCGCTCtcctACTACCACGAGCTGTACGAGCTGCACCTGCACCTGAACTTCGTGATCAAG
CGCCTGCACGGTCTGCAGGAACGCCAGGCGACGCAGGCAGAAGCCGGCAACCTCGGGTAA
Translation:
MNRIKHLLKDLAILIRANLWLIPVIAALVAAVFYFVAPPPPMSATMATGAEGGGYAVFAGKLREKLKEQGFE
LRLVPSAGSRDNLERLLGTGEVDIALVQSGQERQLEAGQARQLQTLGAVYQEPLWLFHRSNVHIDQLSDLLH
LRLAIGSDGSGTRAATEAILQANDIAPGHYPITWEARGGNAVVDDLLAGKLDAAFIVGPAENPAIQKLADND
QLRLVNFRRSAAYEARLPFLKRVEVGEGLLNLPRNVPERNISTLSPVATLVINERFHPALIPLVLEAAREVM
KDGSLLDKPGAFPSAEPRTLRLHEDAERYYKSGLPLLQRYLPFRIASLADRYIILLIPFIAILIPLMKSIGP
LYRWRIRARIYRWYRYIRDIDRKLDSGTDAEQLRSEIERLEKLESELNTVEVPLSYYHELYELHLHLNFVIK
RLHGLQERQATQAEAGNLG*
AnnotationID:1132GeneID:1123
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 22:10:35
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic transport protein
Cell Localization:()
Synonyms:PA3848
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2358
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2358, Imp, TRAP-type uncharacterized transport system, 
periplasmic component 
CD-Length = 321 residues, 100.0% aligned
Score =  217 bits (553), Expect = 5e-57
Identities = 94/358 (26%), Positives = 131/358 (36%), Gaps = 47/358 (13%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2249




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19391




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31714




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1123_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1123
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2018
                           PA3848_tr
                           translation of PA3848
                           451
                           99.77
                           99.99
                           0
                           2286.0
     

     
     
68318
                           gb|AAG07235.1|AE004802_4
                           (AE004802) hypothetical protein PA3848 [Pseudomonas aeruginosa PAO1]
                           451
                           99.77
                           99.99
                           0
                           2286.0
     

     






      

          
GC ORFID: 44125How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3848Glimmer Score: 

          
Start: 3736771Stop: 3738126

          
Length: 1356


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3848 translation of PA3848Homolog Bit Score 885.0

          
Other Homologs:  t_PA3848 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCGCATCAAGCACCTGCTCAAGGACCTCGCCATCCTGATCCGCGCCAACCTCTGGCTGATCCCGGTG 
ATCGCCGCCCTGGTCGCCGCGGTGTTCTATTTCGTCGCCCCGCCGCCGCCGATGAGCGCGACCATGGCCACC 
GGCGCCGAGGGCGGCGGCTACGCCGTGTTCGCCGGCAAGCTCCGGGAAAAGCTCAAGGAGCAGGGCTTCGAA 
CTGAGGCTGGTGCCCAGCGCCGGCTCGCGCGACAACCTGGAGCGCCTGCTCGGCACCGGCGAGGTCGACATC 
GCCCTGGTCCAGAGCGGCCAGGAGCGCCAGCTCGAAGCCGGGCAGGCGCGCCAGTTGCAGACCCTCGGCGCG 
GTCTACCAGGAGCCGCTCTGGCTGTTCCACCGCAGCAACGTGCACATCGACCAGCTCAGCGACCTGCTGCAC 
CTGCGCCTGGCCATCGGCAGCGACGGCAGCGGCACCCGCGCCGCCACCGAGGCGATCCTGCAGGCCAACGAC 
ATCGCCCCGGGACACTATCCGATCACCTGGGAAGCCCGCGGCGGCAACGCGGTGGTCGACGACCTGCTGGCC 
GGCAAGCTGGACGCGGCGTTCATCGTCGGCCCGGCGGAGAACCCGGCGATCCAGAAATTGGCCGACAACGAC 
CAGCTTCGCCTGGTCAACTTCCGCCGCAGCGCCGCCTACGAGGCGCGCCTGCCGTTCCTCAAGCGGGTCGAG 
GTCGGCGAAGGCCTGCTCAACCTGCCGCGCAACGTGCCGGAACGAAACATCAGCACCCTGTCGCCGGTGGCC 
ACCCTGGTGATCAACGAGCGCTTCCACCCGGCGCTGATCCCGCTGGTACTGGAAGCCGCGCGCGAGGTGATG 
AAGGACGGCAGCCTGCTCGACAAGCCCGGCGCCTTCCCCAGCGCCGAGCCGCGCACCCTGCGCCTGCACGAG 
GACGCCGAGCGCTACTACAAGAGCGGCCTGCCGCTGCTGCAGCGCTACCTGCCGTTCCGCATCGCCTCCCTG 
GCGGACCGCTACATCATCCTGCTGATCCCGTTCATCGCCATCCTCATCCCGCTGATGAAGTCCATCGGCCCG 
CTGTATCGCTGGCGCATCCGCGCGCGCATCTACCGCTGGTACCGCTACATCCGCGACATCGACCGCAAGCTC 
GACAGCGGCACCGACGCCGAGCAACTGAGAAGCGAGATCGAGCGGCTGGAGAAACTGGAGAGCGAGCTGAAC 
ACCGTGGAGGTGCCGCTCtcctACTACCACGAGCTGTACGAGCTGCACCTGCACCTGAACTTCGTGATCAAG 
CGCCTGCACGGTCTGCAGGAACGCCAGGCGACGCAGGCAGAAGCCGGCAACCTCGGGTAA