ViewGene
Locus Name:
GeneID:
Location:

GeneID:1122
TrivialName: PA14_32630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32630
PAO1 Ortholog Locus:PA2475
Sequence Length:1335
Protein Length:444
Start: 2833239
Stop: 2834573
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05863.1|AE004675_4 (AE004675) probable cytochrome P450 [Pseudomonas aeruginosa PAO1]
Identities = 438/444 (98%), Positives = 438/444 (98%)
Sequence:
ATGGACGACGCATTCAGCGAGGAAGGCAGCGCGCAGCCGCGCCATGACGCTCAGCGTCCGGCGCTCGCTCCG
CGGAGCGACGGTTTCGACATCCACACCTACCATCCCGACTTCGTCGCCGATCCCTATCCGCTGTTGCGGCTG
ATCCGCTCCCGTGCGCCGGTCTGCCGCGACCAGGCCTCGATCTGGTGGATCAGTCGCTATGCCGATGTCTCG
GCGTGCCTGCGCGACCGCCGTTTCTCCGCCGACCCCGCTCGCCTTGGCGCCGCCGGCGTCCGCCAGGGCGGC
GCCAGCTGGTTCGGCCACCAGCAATTGCAACCGCTGGCGCGCTTCTACGACAACTTCATGCTGTTCAACGAC
GCGCCGCGGCACACCCGCCTGCGCAGGCTGTTCGCTCCGGCCTTCGGCCCCGACGCCGTGCGCCGCTGGGAG
GCGTGCATCGAGGCGCTGGTGGAAGAGCTCCTCGACAGCTTGCTGGAGCGCCGCGAGCCCGATCTGCTCAGG
GACTTCGCCGAACCGCTGACGATCCGGGTGGCCGCCGAGCTGTTCGGCTTTCCCCGCGAAGACACCGGGCAA
CTGCTGCCCTGGGGCCGCGACCTGGCCGCCGGGCTCGATCTCGCCGCCAGCCACGGCGATGCCGGGCAGATC
AACCGCAGCGCGGCCGCCTTCAGCGACTACCTGCAACGCCAGGCGCGCGGCTGGAGCGATGGCTCTTCGCGC
CCGCCGCCCGGCGCAGCGCCGAGCATCCTCGACGGCGCCGCGATGCTGGAGGCCGGACTGGGCCTCGAGGGC
CTGGTGGCGGCCTATGCCATGGTGTTCATGGCCGCGTTCGAAACCACCATCAGCATGGTCGGCAACGCTACG
CTGGCGCTGCTCACCCATCCCGACCAGCTCGATCTGCTGCGGCGGTGCCCGGAGCTGGTGGCGAACGCGGTG
GAGGAACTGCTGCGCTTCGACGGCGCGGTGCGCGGCGGCGTGCGTTGCACCCTGGAGGAGGTGGAGATCGGC
GGCCAGCGGATTCCGCCTGGAGAGAAGGTCTGGCTGAGCTTCCTCGCGGCGAACCGCGACCCGGAGATGTTC
GCCGCCCCCGACCGTCTGCAATTGCAGCGAGCGAACGCCAAGCAGCACGTGGCGTTCGCCCATGGTCCGCAC
TACTGCCTGGGCGCGTACCTGGCCCGGCTCGAATTGCAATGCGCATTGCGCGGCCTGGTGCGTCGCCGTTTC
GCCCTGGCCTCGGAACCGACGGACCTGCGCTGGCGGCGCAGCTCGGTGTTCCGCACCCTGGAGCGCTTGCCG
ATCGTCCCGGAAGGCGACGCTCAGAAGACCTGCGAGTAG
Translation:
MDDAFSEEGSAQPRHDAQRPALAPRSDGFDIHTYHPDFVADPYPLLRLIRSRAPVCRDQASIWWISRYADVS
ACLRDRRFSADPARLGAAGVRQGGASWFGHQQLQPLARFYDNFMLFNDAPRHTRLRRLFAPAFGPDAVRRWE
ACIEALVEELLDSLLERREPDLLRDFAEPLTIRVAAELFGFPREDTGQLLPWGRDLAAGLDLAASHGDAGQI
NRSAAAFSDYLQRQARGWSDGSSRPPPGAAPSILDGAAMLEAGLGLEGLVAAYAMVFMAAFETTISMVGNAT
LALLTHPDQLDLLRRCPELVANAVEELLRFDGAVRGGVRCTLEEVEIGGQRIPPGEKVWLSFLAANRDPEMF
AAPDRLQLQRANAKQHVAFAHGPHYCLGAYLARLELQCALRGLVRRRFALASEPTDLRWRRSSVFRTLERLP
IVPEGDAQKTCE*
AnnotationID:1131GeneID:1122
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 17:05:30
Gene Name:
Confidence Code:3
GeneProduct:probable cytochrome P450
Cell Localization:()
Synonyms:PA2475
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]






   
Genomic Context:






   
Comment:


















    ReferenceID:2247




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19389




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1122
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2017
                           PA2475_tr
                           translation of PA2475
                           444
                           98.64
                           98.64
                           0
                           2287.0
     

     
     
68315
                           gb|AAG05863.1|AE004675_4
                           (AE004675) probable cytochrome P450 [Pseudomonas aeruginosa PAO1]
                           444
                           98.64
                           98.64
                           0
                           2287.0
     

     
     
68317
                           gb|AAP09593.1|
                           (AE017006) Cytochrome P450 [Bacillus cereus ATCC 14579]
                           447
                           18.79
                           26.84
                           229
                           312.0
     

     
     
68316
                           gb|AAG13924.1|AF263245_20
                           (AF263245) C-6 hydroxylase [Micromonospora megalomicea subsp. nigra]
                           446
                           17.04
                           24.43
                           259
                           325.0
     

     






      

          
GC ORFID: 44124How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2475Glimmer Score: 

          
Start: 2120685Stop: 2119351

          
Length: 1335


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2475 translation of PA2475Homolog Bit Score 885.0

          
Other Homologs:  t_PA2475 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGACGCATTCAGCGAGGAAGGCAGCGCGCAGCCGCGCCATGACGCTCAGCGTCCGGCGCTCGCTCCG 
CGGAGCGACGGTTTCGACATCCACACCTACCATCCCGACTTCGTCGCCGATCCCTATCCGCTGTTGCGGCTG 
ATCCGCTCCCGTGCGCCGGTCTGCCGCGACCAGGCCTCGATCTGGTGGATCAGTCGCTATGCCGATGTCTCG 
GCGTGCCTGCGCGACCGCCGTTTCTCCGCCGACCCCGCTCGCCTTGGCGCCGCCGGCGTCCGCCAGGGCGGC 
GCCAGCTGGTTCGGCCACCAGCAATTGCAACCGCTGGCGCGCTTCTACGACAACTTCATGCTGTTCAACGAC 
GCGCCGCGGCACACCCGCCTGCGCAGGCTGTTCGCTCCGGCCTTCGGCCCCGACGCCGTGCGCCGCTGGGAG 
GCGTGCATCGAGGCGCTGGTGGAAGAGCTCCTCGACAGCTTGCTGGAGCGCCGCGAGCCCGATCTGCTCAGG 
GACTTCGCCGAACCGCTGACGATCCGGGTGGCCGCCGAGCTGTTCGGCTTTCCCCGCGAAGACACCGGGCAA 
CTGCTGCCCTGGGGCCGCGACCTGGCCGCCGGGCTCGATCTCGCCGCCAGCCACGGCGATGCCGGGCAGATC 
AACCGCAGCGCGGCCGCCTTCAGCGACTACCTGCAACGCCAGGCGCGCGGCTGGAGCGATGGCTCTTCGCGC 
CCGCCGCCCGGCGCAGCGCCGAGCATCCTCGACGGCGCCGCGATGCTGGAGGCCGGACTGGGCCTCGAGGGC 
CTGGTGGCGGCCTATGCCATGGTGTTCATGGCCGCGTTCGAAACCACCATCAGCATGGTCGGCAACGCTACG 
CTGGCGCTGCTCACCCATCCCGACCAGCTCGATCTGCTGCGGCGGTGCCCGGAGCTGGTGGCGAACGCGGTG 
GAGGAACTGCTGCGCTTCGACGGCGCGGTGCGCGGCGGCGTGCGTTGCACCCTGGAGGAGGTGGAGATCGGC 
GGCCAGCGGATTCCGCCTGGAGAGAAGGTCTGGCTGAGCTTCCTCGCGGCGAACCGCGACCCGGAGATGTTC 
GCCGCCCCCGACCGTCTGCAATTGCAGCGAGCGAACGCCAAGCAGCACGTGGCGTTCGCCCATGGTCCGCAC 
TACTGCCTGGGCGCGTACCTGGCCCGGCTCGAATTGCAATGCGCATTGCGCGGCCTGGTGCGTCGCCGTTTC 
GCCCTGGCCTCGGAACCGACGGACCTGCGCTGGCGGCGCAGCTCGGTGTTCCGCACCCTGGAGCGCTTGCCG 
ATCGTCCCGGAAGGCGACGCTCAGAAGACCTGCGAGTAG