ViewGene
Locus Name:
GeneID:
Location:

GeneID:1121
TrivialName: PA14_49420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49420
PAO1 Ortholog Locus:PA1158
Sequence Length:1359
Protein Length:452
Start: 4392918
Stop: 4391560
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04547.1|AE004546_2 (AE004546) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 451/452 (99%), Positives = 451/452 (99%)
Sequence:
ATGGATGGACGCAGCCGCGCGCGTCTGATGAACGGCCAGGTGCTGGTGAAGCAGACCGCCGAGCACGCCGTC
ACCGTCTATACCCAGGCCAGCGCCGCCGAGAACCTGGTGCTCAGCGGCGAGGTGCAGCAGGTCAGCGAGCAA
CTGGCGCGGGCCACGGTTTACCTGCTGATGGACGAACTGGTGCGCTACCCGGCCAGCGAACAGCCTTACCAC
CTGGCGCGGATCGTCCGCGACAAGCGCTTCGGCTTCCCGGTGCATCTGCTCCAGGTCAAGGAGCTGGACCTC
GACGACGACCAGCGCCGGCGGGTGGTGGAGGGCGACACGGTGATGGCGCTGGGCAAGGACGGCGACTCGATC
CGCATCTTCGCCGGCATCCTCGACACGCCCTGGGTGCTGGAGCTGGGCCCGCTGTTCCAGATGAACCTCTAT
CCGCCGCAGCTGCTGTTGCTGCTCGGCGCGCTGTGCCTGAGCTTCATCGGCCTGATCACCTACCTGCTGGTG
CGTCGTCTGGAGCAGCGCCTGCGCAGCCTGGAGGCGGCCGCCACGCGGATCGCCCGCGGCAGTCTGGATACC
CGCGTCGAGGTGCGCGGCGGCGACTCGGTGGGACGCCTGGGCGCGGCCTTCAACCATATGGCCGAGCACATC
CACCGGCTGCTGACGGTGCAGCGCGAGATGGTTCGCGCGGTGTCCCACGAGCTGCGCACGCCGGTGGCGCGG
TTGCGCTTCGGCCTGGAGATGATCGAGACCGCCGAGACCGACGGCGCCCGCCTGAAGTACCTGGAGGGCATG
GACAACGATATCCAGGACCTCGACAAGCTGGTCGACGAGATGCTCACCTACGCGCGCTTGGAACAGGGCTCG
CCGCCGCTGACCTACCAGCGCCTGGAGCTGGGCGTGCTGGTGCGCCAGGTGGTGGAGGAGATCGCTCCGCTG
CGCCGCGAGGTGCTGGTCAGTTGCGAGGAGGGCGCGCTGGTGCCTGAGGAGCTGGGCAGTTGGATCGAGGCC
GAGCCGCGCTACCTGCATCGGGCCTTGCAGAACCTGCTGACCAATGCGCTGCGGCATGCCGATCGTCGGGTC
AGGATCAGCTACCGGGTCAGCCTGGAGCGTTGCCGGGTGGATGTCGAGGACGACGGGCCGGGGGTGCCGGAG
GCGCAATGGGAGCGGCTCTTTACGCCATTCCTACGCCTGGACGACAGCCGGACCCGTGCTTCCGGCGGGCAT
GGCCTGGGACTGTCCATCGTCCGGCGGATCGTCTACTGGCATGGCGGCCGGGCCTCCATCGGCCGCAGCGAG
ACTCTGGGCGGTGCCTGCTTCACCCTGGCCTGGCCGCGCAAGGCAGGTCTGCGCGACCGCTGA
Translation:
MDGRSRARLMNGQVLVKQTAEHAVTVYTQASAAENLVLSGEVQQVSEQLARATVYLLMDELVRYPASEQPYH
LARIVRDKRFGFPVHLLQVKELDLDDDQRRRVVEGDTVMALGKDGDSIRIFAGILDTPWVLELGPLFQMNLY
PPQLLLLLGALCLSFIGLITYLLVRRLEQRLRSLEAAATRIARGSLDTRVEVRGGDSVGRLGAAFNHMAEHI
HRLLTVQREMVRAVSHELRTPVARLRFGLEMIETAETDGARLKYLEGMDNDIQDLDKLVDEMLTYARLEQGS
PPLTYQRLELGVLVRQVVEEIAPLRREVLVSCEEGALVPEELGSWIEAEPRYLHRALQNLLTNALRHADRRV
RISYRVSLERCRVDVEDDGPGVPEAQWERLFTPFLRLDDSRTRASGGHGLGLSIVRRIVYWHGGRASIGRSE
TLGGACFTLAWPRKAGLRDR*
AnnotationID:1130GeneID:1121
AnnotatorUID: danlee
Modification Date/Time: 2004-09-14 16:04:48
Gene Name:
Confidence Code:3
GeneProduct:probable two-component sensor
Cell Localization:()
Synonyms:PA1158
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
similar to known or putative sensor histidine kinases






 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
             CD-Length = 336 residues,  91.4% aligned
             Score =  140 bits (353), Expect = 2e-34






   
Genomic Context:
Upstream gene is presumed transcriptional regulator controlled by this sensor. 






   
Comment:


















    ReferenceID:2245




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19387




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1121
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2016
                           PA1158_tr
                           translation of PA1158
                           452
                           99.77
                           99.77
                           0
                           2288.0
     

     
     
68312
                           gb|AAG04547.1|AE004546_2
                           (AE004546) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           452
                           99.77
                           99.77
                           0
                           2288.0
     

     
     
68313
                           gb|AAO55193.1|
                           (AE016861) sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           466
                           62.87
                           76.82
                           16
                           1529.0
     

     
     
68314
                           gb|AAN66806.1|AE016309_8
                           (AE016778) sensor histidine kinase [Pseudomonas putida KT2440]
                           543
                           54.88
                           67.21
                           99
                           1523.0
     

     






      

          
GC ORFID: 44123How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1158Glimmer Score: 

          
Start: 560990Stop: 562348

          
Length: 1359


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1158 translation of PA1158Homolog Bit Score 885.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6431 (ORF: BLASTX 692.0), t_PA1158 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATGGACGCAGCCGCGCGCGTCTGATGAACGGCCAGGTGCTGGTGAAGCAGACCGCCGAGCACGCCGTC 
ACCGTCTATACCCAGGCCAGCGCCGCCGAGAACCTGGTGCTCAGCGGCGAGGTGCAGCAGGTCAGCGAGCAA 
CTGGCGCGGGCCACGGTTTACCTGCTGATGGACGAACTGGTGCGCTACCCGGCCAGCGAACAGCCTTACCAC 
CTGGCGCGGATCGTCCGCGACAAGCGCTTCGGCTTCCCGGTGCATCTGCTCCAGGTCAAGGAGCTGGACCTC 
GACGACGACCAGCGCCGGCGGGTGGTGGAGGGCGACACGGTGATGGCGCTGGGCAAGGACGGCGACTCGATC 
CGCATCTTCGCCGGCATCCTCGACACGCCCTGGGTGCTGGAGCTGGGCCCGCTGTTCCAGATGAACCTCTAT 
CCGCCGCAGCTGCTGTTGCTGCTCGGCGCGCTGTGCCTGAGCTTCATCGGCCTGATCACCTACCTGCTGGTG 
CGTCGTCTGGAGCAGCGCCTGCGCAGCCTGGAGGCGGCCGCCACGCGGATCGCCCGCGGCAGTCTGGATACC 
CGCGTCGAGGTGCGCGGCGGCGACTCGGTGGGACGCCTGGGCGCGGCCTTCAACCATATGGCCGAGCACATC 
CACCGGCTGCTGACGGTGCAGCGCGAGATGGTTCGCGCGGTGTCCCACGAGCTGCGCACGCCGGTGGCGCGG 
TTGCGCTTCGGCCTGGAGATGATCGAGACCGCCGAGACCGACGGCGCCCGCCTGAAGTACCTGGAGGGCATG 
GACAACGATATCCAGGACCTCGACAAGCTGGTCGACGAGATGCTCACCTACGCGCGCTTGGAACAGGGCTCG 
CCGCCGCTGACCTACCAGCGCCTGGAGCTGGGCGTGCTGGTGCGCCAGGTGGTGGAGGAGATCGCTCCGCTG 
CGCCGCGAGGTGCTGGTCAGTTGCGAGGAGGGCGCGCTGGTGCCTGAGGAGCTGGGCAGTTGGATCGAGGCC 
GAGCCGCGCTACCTGCATCGGGCCTTGCAGAACCTGCTGACCAATGCGCTGCGGCATGCCGATCGTCGGGTC 
AGGATCAGCTACCGGGTCAGCCTGGAGCGTTGCCGGGTGGATGTCGAGGACGACGGGCCGGGGGTGCCGGAG 
GCGCAATGGGAGCGGCTCTTTACGCCATTCCTACGCCTGGACGACAGCCGGACCCGTGCTTCCGGCGGGCAT 
GGCCTGGGACTGTCCATCGTCCGGCGGATCGTCTACTGGCATGGCGGCCGGGCCTCCATCGGCCGCAGCGAG 
ACTCTGGGCGGTGCCTGCTTCACCCTGGCCTGGCCGCGCAAGGCAGGTCTGCGCGACCGCTGA