ViewGene

Locus Name:
GeneID:
Location:

GeneID: 112

TrivialName: PA14_41800

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_41800

PAO1 Ortholog Locus: PA1760

Sequence Length: 2724

Protein Length: 907

Start: 3733149

Stop: 3730426

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05149.1|AE004601_14 (AE004601) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Identities = 905/907 (99%), Positives = 905/907 (99%)

Sequence:

ATGGGCCATCGCGACGGGGTTCCCGCCAGCACCATTCCGCTGTTGCAGACCAAGCTGTTCCCGCCAAGCGCC
GGAGGGCTGCCGCTGCTGCCCCGCCAGGCGCTGATCGACCGCCTGTACGAGGCCCGCGGGCGACGCGCGATG
GTGCTCAGCGCGCCGGCCGGCTTCGGCAAGAGCACCATCCTCTGCCAGTTGCGCCTGCGCCTGCTGGAGCAG
GGCGCGGCGGTGGCATGGCTGTCCTGCGACGAGACCGACAGCGAACCGCAGCGTCTGATCCAGTACCTGCTG
GCGAGCATCCAGCGAGTGGTCCCGGCATTCGGCGGCAATACCGCCAATCTGCTCGGCACCGACGTCGCGGTG
CCGCTGGAGGGTATCCTGGATGCCTTCCTCGCCGACCTGCGTCGCCTGGAAGGCCCCTTGTACCTGTTCCTC
GACGATTTCCACCGCATCCGCCACGCCGCCTTGCCGCATGGGGTTCGCTACCTGATCGAGAACCTGCCCGAT
CACGTGCGGGTGGTGGCCTCGACCCGCTTCCGCCCGCGCTTCCTGGTCGACGAGCCGACCCTCAAGCCCTGG
ACCTTCTGCCTGAGCGCGGAAGACCTGCGACTTTCGCGCGAGGAGAGCGATGCGTTTCTCCTCGATCTCAAG
GGGCTGGAGCTGGGCGAGCGTGAGCTGAAGCTGCTGTTCAAGCGCACCGAAGGCTGGATCACGGCGTTGCAC
CTGGCGGCCCTGGCCCTCAGTCGCAATACCGACCGGGAAGGTTTCCTCCGCGGGCTCTCCGGGACCGAACGG
AACATCGCCGACTACCTGGCGGAAGACGTGCTGGCCAGCCTGCCCGCCGACCTGCAGCTGTTCCTCGACCAG
ACCTCGGTGCTCGACGAGTTCAATGCGGAACTGTGCAATGCGCTGACCGGACGTCGCGACGGCCTGGACATG
CTCATGCGCCTGCAGAACGAGCAGTTGTTCGTCATCGCCCTGGACGACCAGCGCGAATGGTTCCGCTACCAC
CATCTGTTCGCCGAGTTCCTCCAGGGGCGGCTGTCCCGGCATGCCGATCCGACCCCGTTGCTGCATGCGGCG
GCGCGCTGGTGCGAGGGGCGCGACCTGGCCGACCGGGCGATCAAGTACGCCCTTCGCGCCCGCGACTACCTG
TTCGCCGCCGAGTTGCTGGAGCGCCAGGGCGCGCGCCTGATCGCCGGTAACCGGGTGTACGGCATCCTCGGC
ATGCTCAACGGCATTCCCGCCGAGGTGATCCGCGAGCATCCGGTGTTCCAGATCTTCTACGCCTGGCAACTG
GCGTTCGAGCAACGCTTCGCCGAGGCCGAGGCGTTGATCGAGGAGGTCAGCCACCGCCTCTTGCAGGGGCGC
GGCAAGGTCATGCACTTCGGGCTCGGCGAGTTGCTCGCCGCCGCCCAGGTGCTCAAGGCCCTGGTGTTGCTC
TACCAGGACAAGCTCGAAGCCTGCCTGAAGGTCGCCCGCCACTGGCTGTCCATGGTTCCGAGCAACCAGCCG
GTGTTCCGCGCCAGCCTGCTCTGCGTGCAGGCTTCGGCGCATGCGCTGCTCGGCGACTACGCCGAGGCCGCC
GGCGCCATCGGTTCCGCGCGGGAGGACTTGAAAGTCGCCGACAGCGAGTACCTGCAGGTGGTGACCAGCCTG
ATCGAATCCCTGATCTGCAAGGAGAGTGGCGACCTGGAGCGGGGCAGGGCGATCGCCGAGTCGGCGCGCAAC
CGGGTCGAGCAGGTATTCGGCCGGCGCAGCCGGGTCGGCGGGCCCTTGTCGCTGGCCTATGCCGACCTGCTC
TACGAGCAGGACCGGCATGCCGGCGTGCTCGCCGAACTACCGCTGGCGACGGTCTGGCGGGATGTCGCGACG
CCGGTGGAACTGCTCAGTCGCGGCCAGTTGGTCATGGCCAAGGCGCGCTTCTTCTCCGGCGCCGCCGAGCAG
GGGCTGGCGCAACTCGACGAATGGCTGAGCGGTCTGCTCTCGCCCGGCTACGAGCGTGTCTATGCTCACGCC
ATGAGCTGCAAGGTGCAGTTCCTGCTGTGGCTGCGCCGTCCGAACGAAGCCGAACGGGTCTGCCTGCAACTG
GAGCGGCATCTTGCCGGGCTCTCCGGCGAGCGGCACGCCGACGCACAGACCGCCCTGGTCCTGGCGGAGGCT
CGGCTGGCATTGTCCGAGCGTCACGCGGAACGCGCGCAGAGCAAGCTGGAAAGCTGTCTGGCCGGCTACTCT
TCCGCTTACCAGAGGGATCGGCGGCTGCGTTTGTCCTTGTTACTTTCTGTGGCGTATTGGCAGAAAGGTAAC
AGCGAAAAAGCCATCGGCCTGTTCCTCGCCACGCTCGAGGAAGCCTGGAATCTCGGCTATCGCCGGCTGTTC
CAGGACGACGCGTTGTGGCTGTTGCCGATGTGGGAAAGCTGGAGGGAAGCGGAGCCCAAGCGTGCCGCGGCC
TGGCAGGGGCTGGCCGACCTGCTCCGCGAGCAGTGCCGGAAGCTCTCCGTGGACCCGGAAAGTTTCGATGAA
AATCAGGATGTTAGCCATCGCGAACGGGAAATCCTGCGGCTGGTGGCGGCGGGCTTGTCGAACCGCGATATC
GCGCAGGCGGTGCACCTGTCGGAAGCCACCATCAAGTGGCACCTGCACAACCTGTTCGCCAAGCTGGGTGTG
AAGAGCAGAACGCAAGCCGTACTAAAGGGTAAAAGCCTGGGACTGCTGAGCGAGGCGTGA

Translation:

MGHRDGVPASTIPLLQTKLFPPSAGGLPLLPRQALIDRLYEARGRRAMVLSAPAGFGKSTILCQLRLRLLEQ
GAAVAWLSCDETDSEPQRLIQYLLASIQRVVPAFGGNTANLLGTDVAVPLEGILDAFLADLRRLEGPLYLFL
DDFHRIRHAALPHGVRYLIENLPDHVRVVASTRFRPRFLVDEPTLKPWTFCLSAEDLRLSREESDAFLLDLK
GLELGERELKLLFKRTEGWITALHLAALALSRNTDREGFLRGLSGTERNIADYLAEDVLASLPADLQLFLDQ
TSVLDEFNAELCNALTGRRDGLDMLMRLQNEQLFVIALDDQREWFRYHHLFAEFLQGRLSRHADPTPLLHAA
ARWCEGRDLADRAIKYALRARDYLFAAELLERQGARLIAGNRVYGILGMLNGIPAEVIREHPVFQIFYAWQL
AFEQRFAEAEALIEEVSHRLLQGRGKVMHFGLGELLAAAQVLKALVLLYQDKLEACLKVARHWLSMVPSNQP
VFRASLLCVQASAHALLGDYAEAAGAIGSAREDLKVADSEYLQVVTSLIESLICKESGDLERGRAIAESARN
RVEQVFGRRSRVGGPLSLAYADLLYEQDRHAGVLAELPLATVWRDVATPVELLSRGQLVMAKARFFSGAAEQ
GLAQLDEWLSGLLSPGYERVYAHAMSCKVQFLLWLRRPNEAERVCLQLERHLAGLSGERHADAQTALVLAEA
RLALSERHAERAQSKLESCLAGYSSAYQRDRRLRLSLLLSVAYWQKGNSEKAIGLFLATLEEAWNLGYRRLF
QDDALWLLPMWESWREAEPKRAAAWQGLADLLREQCRKLSVDPESFDENQDVSHREREILRLVAAGLSNRDI
AQAVHLSEATIKWHLHNLFAKLGVKSRTQAVLKGKSLGLLSEA*

AnnotationID:122 GeneID:112

AnnotatorUID: diggins

Modification Date/Time: 2005-03-01 07:07:58

Gene Name:

Confidence Code: 3

GeneProduct: putative transcriptional regulator

Cell Localization: ()

Synonyms: PA1760

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2909

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]
CD-Length = 894 residues, 100.0% aligned
Score =  837 bits (2164), Expect = 0.0
Identities = 330/908 (36%), Positives = 460/908 (50%), Gaps = 23/908 (2%)

Genomic Context:

Comment:

ReferenceID:227

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17369

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37124

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 112_cdd.html

URL:

Homologs By Global Alignment

Gene ID:112

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

215 PA1760_tr translation of PA1760 907 99.77 99.77 0 4610.0

15612 gb|AAG05149.1|AE004601_14 (AE004601) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 907 99.77 99.77 0 4610.0

GC ORFID: `43114`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1760`	Glimmer Score:
Start: `1220760`	Stop: `1223483`
Length: `2724`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1760 translation of PA1760`	Homolog Bit Score `1780.0`
Other Homologs: `t_PA1760 (ORF: GLIMMER)`
GC ORF Sequence
ATGGGCCATCGCGACGGGGTTCCCGCCAGCACCATTCCGCTGTTGCAGACCAAGCTGTTCCCGCCAAGCGCC GGAGGGCTGCCGCTGCTGCCCCGCCAGGCGCTGATCGACCGCCTGTACGAGGCCCGCGGGCGACGCGCGATG GTGCTCAGCGCGCCGGCCGGCTTCGGCAAGAGCACCATCCTCTGCCAGTTGCGCCTGCGCCTGCTGGAGCAG GGCGCGGCGGTGGCATGGCTGTCCTGCGACGAGACCGACAGCGAACCGCAGCGTCTGATCCAGTACCTGCTG GCGAGCATCCAGCGAGTGGTCCCGGCATTCGGCGGCAATACCGCCAATCTGCTCGGCACCGACGTCGCGGTG CCGCTGGAGGGTATCCTGGATGCCTTCCTCGCCGACCTGCGTCGCCTGGAAGGCCCCTTGTACCTGTTCCTC GACGATTTCCACCGCATCCGCCACGCCGCCTTGCCGCATGGGGTTCGCTACCTGATCGAGAACCTGCCCGAT CACGTGCGGGTGGTGGCCTCGACCCGCTTCCGCCCGCGCTTCCTGGTCGACGAGCCGACCCTCAAGCCCTGG ACCTTCTGCCTGAGCGCGGAAGACCTGCGACTTTCGCGCGAGGAGAGCGATGCGTTTCTCCTCGATCTCAAG GGGCTGGAGCTGGGCGAGCGTGAGCTGAAGCTGCTGTTCAAGCGCACCGAAGGCTGGATCACGGCGTTGCAC CTGGCGGCCCTGGCCCTCAGTCGCAATACCGACCGGGAAGGTTTCCTCCGCGGGCTCTCCGGGACCGAACGG AACATCGCCGACTACCTGGCGGAAGACGTGCTGGCCAGCCTGCCCGCCGACCTGCAGCTGTTCCTCGACCAG ACCTCGGTGCTCGACGAGTTCAATGCGGAACTGTGCAATGCGCTGACCGGACGTCGCGACGGCCTGGACATG CTCATGCGCCTGCAGAACGAGCAGTTGTTCGTCATCGCCCTGGACGACCAGCGCGAATGGTTCCGCTACCAC CATCTGTTCGCCGAGTTCCTCCAGGGGCGGCTGTCCCGGCATGCCGATCCGACCCCGTTGCTGCATGCGGCG GCGCGCTGGTGCGAGGGGCGCGACCTGGCCGACCGGGCGATCAAGTACGCCCTTCGCGCCCGCGACTACCTG TTCGCCGCCGAGTTGCTGGAGCGCCAGGGCGCGCGCCTGATCGCCGGTAACCGGGTGTACGGCATCCTCGGC ATGCTCAACGGCATTCCCGCCGAGGTGATCCGCGAGCATCCGGTGTTCCAGATCTTCTACGCCTGGCAACTG GCGTTCGAGCAACGCTTCGCCGAGGCCGAGGCGTTGATCGAGGAGGTCAGCCACCGCCTCTTGCAGGGGCGC GGCAAGGTCATGCACTTCGGGCTCGGCGAGTTGCTCGCCGCCGCCCAGGTGCTCAAGGCCCTGGTGTTGCTC TACCAGGACAAGCTCGAAGCCTGCCTGAAGGTCGCCCGCCACTGGCTGTCCATGGTTCCGAGCAACCAGCCG GTGTTCCGCGCCAGCCTGCTCTGCGTGCAGGCTTCGGCGCATGCGCTGCTCGGCGACTACGCCGAGGCCGCC GGCGCCATCGGTTCCGCGCGGGAGGACTTGAAAGTCGCCGACAGCGAGTACCTGCAGGTGGTGACCAGCCTG ATCGAATCCCTGATCTGCAAGGAGAGTGGCGACCTGGAGCGGGGCAGGGCGATCGCCGAGTCGGCGCGCAAC CGGGTCGAGCAGGTATTCGGCCGGCGCAGCCGGGTCGGCGGGCCCTTGTCGCTGGCCTATGCCGACCTGCTC TACGAGCAGGACCGGCATGCCGGCGTGCTCGCCGAACTACCGCTGGCGACGGTCTGGCGGGATGTCGCGACG CCGGTGGAACTGCTCAGTCGCGGCCAGTTGGTCATGGCCAAGGCGCGCTTCTTCTCCGGCGCCGCCGAGCAG GGGCTGGCGCAACTCGACGAATGGCTGAGCGGTCTGCTCTCGCCCGGCTACGAGCGTGTCTATGCTCACGCC ATGAGCTGCAAGGTGCAGTTCCTGCTGTGGCTGCGCCGTCCGAACGAAGCCGAACGGGTCTGCCTGCAACTG GAGCGGCATCTTGCCGGGCTCTCCGGCGAGCGGCACGCCGACGCACAGACCGCCCTGGTCCTGGCGGAGGCT CGGCTGGCATTGTCCGAGCGTCACGCGGAACGCGCGCAGAGCAAGCTGGAAAGCTGTCTGGCCGGCTACTCT TCCGCTTACCAGAGGGATCGGCGGCTGCGTTTGTCCTTGTTACTTTCTGTGGCGTATTGGCAGAAAGGTAAC AGCGAAAAAGCCATCGGCCTGTTCCTCGCCACGCTCGAGGAAGCCTGGAATCTCGGCTATCGCCGGCTGTTC CAGGACGACGCGTTGTGGCTGTTGCCGATGTGGGAAAGCTGGAGGGAAGCGGAGCCCAAGCGTGCCGCGGCC TGGCAGGGGCTGGCCGACCTGCTCCGCGAGCAGTGCCGGAAGCTCTCCGTGGACCCGGAAAGTTTCGATGAA AATCAGGATGTTAGCCATCGCGAACGGGAAATCCTGCGGCTGGTGGCGGCGGGCTTGTCGAACCGCGATATC GCGCAGGCGGTGCACCTGTCGGAAGCCACCATCAAGTGGCACCTGCACAACCTGTTCGCCAAGCTGGGTGTG AAGAGCAGAACGCAAGCCGTACTAAAGGGTAAAAGCCTGGGACTGCTGAGCGAGGCGTGA