ViewGene

Locus Name:
GeneID:
Location:

GeneID:1119
TrivialName: PA14_54500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54500
PAO1 Ortholog Locus:PA0757
Sequence Length:1383
Protein Length:460
Start: 4832881
Stop: 4831499
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04146.1|AE004510_10 (AE004510) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 457/460 (99%), Positives = 458/460 (99%)
Sequence:
GTGACTGATGCCGGCAGTCTGCGCGGACGGCTGCTGCTGTGGCTGGCCCTGCTCCTGCTGCTGGTGCTCCTG
GCGAGCGGCCTGAGCGCCTACTGGAACGGCCGCGAGGTGGCCGACACCGCCTACGACCGGACCTTGCTGGCC
TCGGCGCGGGCGATCGCCGACGGGCTCTACGAGAAGGACGGCACCCTGCGCGCCGACGTCCCCTACGTGGCG
CTGGATACCTTCGCCTACGACAGCGCCGGGCGGATCTTCTACCAGGTCAACGACATCCATGGTCGGATGATC
TCCGGCTACGAGAATCTTCCGGCAGCACCCGCCGAGACCCTGCGCACCGACGACTACCCGGCCTTGGCGAAG
TTCTACGACGGCGTCTACCAGGGCGTCGACGTACGCGTGGTGAGCCTGCTGCAGCCGGTCAGCGAACCGAGC
ATGAGCGGCATGGCGGAGATCCGCGTGGCCGAGACCGAAGGCGCCCGCGAGCGCATGGCGCGCAGCCTGATG
ACCGATACCCTGTTGCGCCTGGGCGTCCTCGGCGTCGGCGCGCTGGTGCTGGTGTGGCTGGCGGTGAGCGCC
GCGCTGCGTCCGCTGGATCGCCTGCGCCGCGAGGTGGAAGAGCGCCAGCCGGACGATCTGCGGCCGTTGCCG
ATGCTCGAGGTCCAGCATGAATTGCGGCCGCTGGTGGAGTCGCTGAACCACTTCACCCAGCGCCTGCGCAGC
CTGTTCGAGCGGCAGTCGCAGTTCATCGCCGATGCCGCCCACGAGTTGCGCACGCCGCTGGCGGCGCTCAAG
GCGCGCCTGGAACTGGGCCTGCGTGAGCAGGAGCCGGAAGCCTGGCGTTCGACCCTGGAGACCACGGCGAAG
AACACCGACCGCCTGATCCATCTGGCCAACCAGCTGCTCTCCCTGGCGCGCATCGAAAGCGGCGCCCAGGCC
ATCGCCGAGGGCGGCGCCGAGCGTATCGACCTGACCGCCCTGGCCCGGGAACTGGGCCTGGCGCTGGCGCCG
CTGGCCTATGCGCGGGGAGCCTCGCTGGCGCTGGAAAGCGCCGGGCCGGTGTGGATCCAGGGTGAACCGACG
CTGCTCAACGAATTGCTCAGCAACCTGCTGGACAACGCGCTGGCGCACACCCCGCAGGGCGGCAACGTGATC
CTCAGGGTGCTGGAGGGGGGAGTGCTGGAAGTGGAAGACGATGGTCCGGGAATTCCCGCCGCCGACCGCGAG
CGGGTCTTCCAGCGCTTCTACCGGCGCGGCGACAGCCCCGGCAGCGGCCTGGGGCTGGCGATCGTCGGCGAG
GTCTGCCGGGCGCACCGGGCGCAGATCCAGCTCGACCAGGGCGAACTGGGCGGCTTGCTGGTGCGGGTGCGC
TTCCCGGCGGAGTAG
Translation:
MTDAGSLRGRLLLWLALLLLLVLLASGLSAYWNGREVADTAYDRTLLASARAIADGLYEKDGTLRADVPYVA
LDTFAYDSAGRIFYQVNDIHGRMISGYENLPAAPAETLRTDDYPALAKFYDGVYQGVDVRVVSLLQPVSEPS
MSGMAEIRVAETEGARERMARSLMTDTLLRLGVLGVGALVLVWLAVSAALRPLDRLRREVEERQPDDLRPLP
MLEVQHELRPLVESLNHFTQRLRSLFERQSQFIADAAHELRTPLAALKARLELGLREQEPEAWRSTLETTAK
NTDRLIHLANQLLSLARIESGAQAIAEGGAERIDLTALARELGLALAPLAYARGASLALESAGPVWIQGEPT
LLNELLSNLLDNALAHTPQGGNVILRVLEGGVLEVEDDGPGIPAADRERVFQRFYRRGDSPGSGLGLAIVGE
VCRAHRAQIQLDQGELGGLLVRVRFPAE*
AnnotationID:1128GeneID:1119
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 13:01:47
Gene Name:
Confidence Code:3
GeneProduct:probable two-component sensor
Cell Localization:()
Synonyms:PA0757
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].
    CD-Length = 336 residues,  89.6% aligned
    Score =  148 bits (373), Expect = 3e-36
Genomic Context:
Upstream gene is good candidate for regulator .
Comment:
ReferenceID:14285
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19383
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1119

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2008 PA0757_tr translation of PA0757 460 99.34 99.56 0 2287.0
68282 gb|AAG04146.1|AE004510_10 (AE004510) probable two-component sensor [Pseudomonas aeruginosa PAO1] 460 99.13 99.56 0 2284.0
68283 gb|AAO57686.1| (AE016871) sensor histidine kinase TctE [Pseudomonas syringae pv. tomato str. DC3000] 462 75.10 86.14 4 1743.0
68284 gb|AAN67043.1|AE016333_4 (AE016779) sensor histidine kinase TctE, putative [Pseudomonas putida KT2440] 464 74.78 85.56 5 1746.0
68286 emb|CAE38154.1| (BX640431) putative two component sensor kinase [Bordetella parapertussis] 487 33.47 47.43 65 463.0
GC ORFID: 44121How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0757Glimmer Score:
Start: 121026Stop: 122408
Length: 1383
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0757 translation of PA0757Homolog Bit Score 885.0
Other Homologs: psyr_15may02_Scaffold16_revised_gene2700 (ORF: BLASTX 672.0), t_PA0757 (ORF: GLIMMER)
GC ORF Sequence
GTGACTGATGCCGGCAGTCTGCGCGGACGGCTGCTGCTGTGGCTGGCCCTGCTCCTGCTGCTGGTGCTCCTG
GCGAGCGGCCTGAGCGCCTACTGGAACGGCCGCGAGGTGGCCGACACCGCCTACGACCGGACCTTGCTGGCC
TCGGCGCGGGCGATCGCCGACGGGCTCTACGAGAAGGACGGCACCCTGCGCGCCGACGTCCCCTACGTGGCG
CTGGATACCTTCGCCTACGACAGCGCCGGGCGGATCTTCTACCAGGTCAACGACATCCATGGTCGGATGATC
TCCGGCTACGAGAATCTTCCGGCAGCACCCGCCGAGACCCTGCGCACCGACGACTACCCGGCCTTGGCGAAG
TTCTACGACGGCGTCTACCAGGGCGTCGACGTACGCGTGGTGAGCCTGCTGCAGCCGGTCAGCGAACCGAGC
ATGAGCGGCATGGCGGAGATCCGCGTGGCCGAGACCGAAGGCGCCCGCGAGCGCATGGCGCGCAGCCTGATG
ACCGATACCCTGTTGCGCCTGGGCGTCCTCGGCGTCGGCGCGCTGGTGCTGGTGTGGCTGGCGGTGAGCGCC
GCGCTGCGTCCGCTGGATCGCCTGCGCCGCGAGGTGGAAGAGCGCCAGCCGGACGATCTGCGGCCGTTGCCG
ATGCTCGAGGTCCAGCATGAATTGCGGCCGCTGGTGGAGTCGCTGAACCACTTCACCCAGCGCCTGCGCAGC
CTGTTCGAGCGGCAGTCGCAGTTCATCGCCGATGCCGCCCACGAGTTGCGCACGCCGCTGGCGGCGCTCAAG
GCGCGCCTGGAACTGGGCCTGCGTGAGCAGGAGCCGGAAGCCTGGCGTTCGACCCTGGAGACCACGGCGAAG
AACACCGACCGCCTGATCCATCTGGCCAACCAGCTGCTCTCCCTGGCGCGCATCGAAAGCGGCGCCCAGGCC
ATCGCCGAGGGCGGCGCCGAGCGTATCGACCTGACCGCCCTGGCCCGGGAACTGGGCCTGGCGCTGGCGCCG
CTGGCCTATGCGCGGGGAGCCTCGCTGGCGCTGGAAAGCGCCGGGCCGGTGTGGATCCAGGGTGAACCGACG
CTGCTCAACGAATTGCTCAGCAACCTGCTGGACAACGCGCTGGCGCACACCCCGCAGGGCGGCAACGTGATC
CTCAGGGTGCTGGAGGGGGGAGTGCTGGAAGTGGAAGACGATGGTCCGGGAATTCCCGCCGCCGACCGCGAG
CGGGTCTTCCAGCGCTTCTACCGGCGCGGCGACAGCCCCGGCAGCGGCCTGGGGCTGGCGATCGTCGGCGAG
GTCTGCCGGGCGCACCGGGCGCAGATCCAGCTCGACCAGGGCGAACTGGGCGGCTTGCTGGTGCGGGTGCGC
TTCCCGGCGGAGTAG