ViewGene

Locus Name:
GeneID:
Location:

GeneID:1118
TrivialName: PA14_06960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06960
PAO1 Ortholog Locus:PA0534
Sequence Length:1290
Protein Length:429
Start: 603247
Stop: 604536
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03923.1|AE004490_3 (AE004490) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 427/429 (99%), Positives = 428/429 (99%)
Sequence:
ATGTTCCTGCAATCCAACGAGCATGTCGGCACTTACTACGCCGCCGTCAATCCCGAACTgATCCAGCCGCGC
CAGGCCCTGGAGGGTGACCTCGACTGCGAGGTGCTGGTGGTCGGCGCCGGTTTCAGCGGCTTGCACACGGCG
CTGCGGCTGGTCGAAGGCGGACGCCAGGTATGCGTCATCGAAGCCAGCCGGATCGCCTGGGCGGCCTCCGGG
CGCAACGGCGGGCAGGCGCTGCCCGGCTGGTCCAGCGACCTGCCGCCGCTGGAGGCCGACCTCGGCTACGAA
GGCGCACGCCGTCTCTGGGACGGCATGCTCTGGGCGGCCGGCGAGATGCGCGCGTTGCCGCAGCGACATGGC
TTCGACTGCGACTACCGGGTCGGCCACCTATGGACGGCGATCCTGCCGCGCCGGGTCGGCCTGCTCTACGAC
TGGCAGGCCGAGGCCAACCGCCGCTGGGGCTACGAGGGGCTACGCTTCGTGGCGAAGGACGAGTTGCCCGAA
TGGATCGCCAGCGAGCGCTACCTTGCCGGTCTCTACGATCCCCACGCCGCACACCTGAATCCGCTCAAGCTG
GCGTTCGGCCTGGCCGCCGCCATCGAGCGCGCCGGCGGGCGTATCCACGAGCGGACCCGGGCCCTGAGCTAT
CGCGAGGAGGGCGACGGCTACCGGGTCCGTACCGAGCACGGCGAGATCCGCTGCGCGGCGCTGGTGCTGGCC
TGCAACGCCTACATCGACGGGCTGGACAGCGAGCTGTCGCAACGGATGCTGCCGGTGGGCACCTATCAGGTC
GCCACTGAGCCGCTCGGCGAGGAACGGGCGAAGTCGTTGCTGCCGCGCAACTGCTGCGTGACCGACAACCAG
TTCGTCCTCGACTACTTCCGCCTGACCCCGGACCACCGCCTGCTGTTCGGCGGCGGCTGCACCTACCTGGGC
GGCATGCCCAGCGACATCCGCGCCGCCACCCGGCCCTATCTCGAACGGGTGTTCCCGCAGTTGCGCGGGGTG
GCGCTGGAATACGCCTGGGGCGGGCATATCGACTGCAGCATGCGGCGCACCCCGGACATCGGCCGGCAGGGC
AACCGCTACTGGCTGCAAGGCTACTCCGGCCACGGCGTGCTGCCGAGTCTGGCGGCGGCCAGGGCGGTCAGC
GACGCGCTGCTCGGCGACGACGAGACCCTGGCGCTCTACCAGCGTCTGCGCAATCCGAAGTTTCCCGGTGGC
CAGCGCTTCGCCGCGCCGCTGGAAGCCCTGGGCAAAGCGTATTACCGTTTGCGCGACCTGTTCTGA
Translation:
MFLQSNEHVGTYYAAVNPELIQPRQALEGDLDCEVLVVGAGFSGLHTALRLVEGGRQVCVIEASRIAWAASG
RNGGQALPGWSSDLPPLEADLGYEGARRLWDGMLWAAGEMRALPQRHGFDCDYRVGHLWTAILPRRVGLLYD
WQAEANRRWGYEGLRFVAKDELPEWIASERYLAGLYDPHAAHLNPLKLAFGLAAAIERAGGRIHERTRALSY
REEGDGYRVRTEHGEIRCAALVLACNAYIDGLDSELSQRMLPVGTYQVATEPLGEERAKSLLPRNCCVTDNQ
FVLDYFRLTPDHRLLFGGGCTYLGGMPSDIRAATRPYLERVFPQLRGVALEYAWGGHIDCSMRRTPDIGRQG
NRYWLQGYSGHGVLPSLAAARAVSDALLGDDETLALYQRLRNPKFPGGQRFAAPLEALGKAYYRLRDLF*
AnnotationID:1127GeneID:1118
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 18:06:29
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA0534
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69614.1|AE016595_2 (AE016789) oxidoreductase, putative [Pseudomonas putida KT2440]
          Length = 429

 Score =  607 bits (1565), Expect = e-173
 Identities = 287/427 (67%), Positives = 342/427 (80%)
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues, 100.0% aligned
Score =  196 bits (499), Expect = 4e-51
Identities = 114/397 (28%), Positives = 151/397 (38%), Gaps = 24/397 (6%)
Genomic Context:
Comment:
ReferenceID:2239
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19381
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33844
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1118_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1118

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2007 PA0534_tr translation of PA0534 429 99.53 99.76 0 2290.0
68274 gb|AAG03923.1|AE004490_3 (AE004490) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 429 99.53 99.76 0 2290.0
68275 gb|AAN69614.1|AE016595_2 (AE016789) oxidoreductase, putative [Pseudomonas putida KT2440] 429 66.89 79.72 0 1562.0
68276 gb|AAQ59009.1| (AE016914) oxidoreductase [Chromobacterium violaceum ATCC 12472] 431 44.77 60.55 4 953.0
68277 gb|AAN70838.1|AE016728_7 (AE016793) oxidoreductase, putative [Pseudomonas putida KT2440] 438 40.41 57.30 17 790.0
GC ORFID: 44120How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0534Glimmer Score:
Start: 6404589Stop: 6405878
Length: 1290
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0534 translation of PA0534Homolog Bit Score 886.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene140 (ORF: BLASTX 132.0), t_PA0534 (ORF: GLIMMER)
GC ORF Sequence
ATGTTCCTGCAATCCAACGAGCATGTCGGCACTTACTACGCCGCCGTCAATCCCGAACTgATCCAGCCGCGC
CAGGCCCTGGAGGGTGACCTCGACTGCGAGGTGCTGGTGGTCGGCGCCGGTTTCAGCGGCTTGCACACGGCG
CTGCGGCTGGTCGAAGGCGGACGCCAGGTATGCGTCATCGAAGCCAGCCGGATCGCCTGGGCGGCCTCCGGG
CGCAACGGCGGGCAGGCGCTGCCCGGCTGGTCCAGCGACCTGCCGCCGCTGGAGGCCGACCTCGGCTACGAA
GGCGCACGCCGTCTCTGGGACGGCATGCTCTGGGCGGCCGGCGAGATGCGCGCGTTGCCGCAGCGACATGGC
TTCGACTGCGACTACCGGGTCGGCCACCTATGGACGGCGATCCTGCCGCGCCGGGTCGGCCTGCTCTACGAC
TGGCAGGCCGAGGCCAACCGCCGCTGGGGCTACGAGGGGCTACGCTTCGTGGCGAAGGACGAGTTGCCCGAA
TGGATCGCCAGCGAGCGCTACCTTGCCGGTCTCTACGATCCCCACGCCGCACACCTGAATCCGCTCAAGCTG
GCGTTCGGCCTGGCCGCCGCCATCGAGCGCGCCGGCGGGCGTATCCACGAGCGGACCCGGGCCCTGAGCTAT
CGCGAGGAGGGCGACGGCTACCGGGTCCGTACCGAGCACGGCGAGATCCGCTGCGCGGCGCTGGTGCTGGCC
TGCAACGCCTACATCGACGGGCTGGACAGCGAGCTGTCGCAACGGATGCTGCCGGTGGGCACCTATCAGGTC
GCCACTGAGCCGCTCGGCGAGGAACGGGCGAAGTCGTTGCTGCCGCGCAACTGCTGCGTGACCGACAACCAG
TTCGTCCTCGACTACTTCCGCCTGACCCCGGACCACCGCCTGCTGTTCGGCGGCGGCTGCACCTACCTGGGC
GGCATGCCCAGCGACATCCGCGCCGCCACCCGGCCCTATCTCGAACGGGTGTTCCCGCAGTTGCGCGGGGTG
GCGCTGGAATACGCCTGGGGCGGGCATATCGACTGCAGCATGCGGCGCACCCCGGACATCGGCCGGCAGGGC
AACCGCTACTGGCTGCAAGGCTACTCCGGCCACGGCGTGCTGCCGAGTCTGGCGGCGGCCAGGGCGGTCAGC
GACGCGCTGCTCGGCGACGACGAGACCCTGGCGCTCTACCAGCGTCTGCGCAATCCGAAGTTTCCCGGTGGC
CAGCGCTTCGCCGCGCCGCTGGAAGCCCTGGGCAAAGCGTATTACCGTTTGCGCGACCTGTTCTGA