ViewGene
Locus Name:
GeneID:
Location:

GeneID:1117
TrivialName: PA14_04210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04210
PAO1 Ortholog Locus:PA0322
Sequence Length:1395
Protein Length:464
Start: 377027
Stop: 375633
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03711.1|AE004470_5 (AE004470) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 462/464 (99%), Positives = 463/464 (99%)
Sequence:
ATGGCCAGCCAACGCAACAACGGCATCCTCATCGGCGGCAAGCGCCCCGAGTACGTCCACAGCGCCCAGGGC
ACCGGCCTGCGGCGCATCCTCGGGCTCCCCGCCCTGGTCTTCTTCGGGCTGGTCTACATGGTTCCGCTGACC
ATGTTCACCACCTACGGGGTAGTCACCGAGATCACCGGCGGTCGCACCGCCAGCGCCTACCTGATCACCCTG
GCGGCGATGCTCTTCACCGCCTTTTCCTACAGCTTCATGGTGAAGAAATATCCCATCGCCGGCTCGGCCTAT
TCCTATACCAGCCTCAGCTTCGGCCCCTGCGTCGGCTTCCTCGCCGGCTGGTCGCTGCTGCTCGACTACCTG
TTCCTGCCGATGATCAACTACCTGCTCATCGGCCTGTTCCTCAACATCGCCTTCCCGATGGTGCCGGCCTGG
GTCTTCGTGCTCACGGCGATCGGCCTGGTCACCGTGCTCAACGTGATCGGCATCAGCTCGGTGGCCGGCATG
AGCAACGTGATCGTCGGCGCCCAGTTCGTCTTCGCCGTGGTGTTCGTCGCCATGGCGGTCAAGCACCTGGCC
GGCATCCCCTCGCTGGACCTGAGCCTGCCCTTCGTCGGCGACGGCAGCCAGCCGGGCTTCGCCCCGTTGATG
GCCGGCGCGGCGGTGCTGTGCCTGTCGTTCCTCGGCTTCGACGCGGTCTCGACCCTGGCCGAGGAAACCCGC
GACCCGCAACGCGACATCCCGCGCGCCATCGTCATCACCACGGTCGGCGCCGGCCTGCTGTTCACCGTGCTG
GCGGTCTTCAGCCAACTGGTGTTCCCCGGCAGCGTATTCCAGGACGCCGAGTCGGCGGCCAACGAAGTGATG
CTGGCGGCCGGCGGCAAGTTCCTCGCCAGCTTCTTCACCGCCGCCTACGTCGCCGGCGCCGCCGGCTCGGCA
CTGGCCTCGCAGGCCTCGGTGTCGCGCATCCTCTACAGCATGGGCCGCGACGGCATCCTGCCGCGGCGCGTG
TTCGGCAGCCTCTCGGAGCGCTTCAAGACGCCAGTGATCGCGATCCTGGTGGTCTCGGTGATTTCCCTGCTG
GCGGTGGTCATCGACCTCACCACCCTGGCCTCGATGATCAGCTTCGGCGCGCTGGTGGCGTTCTCCGCGGTG
AACCTGGCGGTGATCCGCAGCTACCTGCTGCTCGACGGCCGCCGCGCCCCGCGCGACCTGCTGCGCTACGGG
CTGGTGCCGGCCATCGGCCTGGGCCTGACCCTGTGGCTGTGGACCAGCCTCTCGGCGCTGACCCTGGTGATC
GGCCTGACCTGGTTCGCCGCCGGCCTCGCCTACCTGGCGTTGCATACCGGCGGTTTCCGCCGCAAGGCGCCG
ACCGTGACCTTCTCCGAACAGAACTGA
Translation:
MASQRNNGILIGGKRPEYVHSAQGTGLRRILGLPALVFFGLVYMVPLTMFTTYGVVTEITGGRTASAYLITL
AAMLFTAFSYSFMVKKYPIAGSAYSYTSLSFGPCVGFLAGWSLLLDYLFLPMINYLLIGLFLNIAFPMVPAW
VFVLTAIGLVTVLNVIGISSVAGMSNVIVGAQFVFAVVFVAMAVKHLAGIPSLDLSLPFVGDGSQPGFAPLM
AGAAVLCLSFLGFDAVSTLAEETRDPQRDIPRAIVITTVGAGLLFTVLAVFSQLVFPGSVFQDAESAANEVM
LAAGGKFLASFFTAAYVAGAAGSALASQASVSRILYSMGRDGILPRRVFGSLSERFKTPVIAILVVSVISLL
AVVIDLTTLASMISFGALVAFSAVNLAVIRSYLLLDGRRAPRDLLRYGLVPAIGLGLTLWLWTSLSALTLVI
GLTWFAAGLAYLALHTGGFRRKAPTVTFSEQN*
AnnotationID:1126GeneID:1117
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 12:12:58
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid transporter
Cell Localization:()
Synonyms:PA0322
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative amino acid permease
Functional Category Confidence Code:5
COGs:COG0531,pfam00324
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68194.1|AE016452_7 (AE016783) amino acid transporter, putative [Pseudomonas putida
           KT2440]
          Length = 470

 Score =  417 bits (1072), Expect = e-116
 Identities = 224/437 (51%), Positives = 304/437 (69%), Gaps = 5/437 (1%)








 
Structural Features:
COG0531, PotE, Amino acid transporters 
[Amino acid transport and metabolism]
CD-Length = 466 residues,  94.0% aligned
Score =  112 bits (281), Expect = 9e-26
Identities = 119/442 (26%), Positives = 204/442 (46%), Gaps = 20/442 (4%)

pfam00324, AA_permease, Amino acid permease.
CD-Length = 473 residues,  91.3% aligned
Score =  102 bits (256), Expect = 8e-23
Identities = 85/434 (19%), Positives = 160/434 (36%), Gaps = 26/434 (5%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2237




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19379




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33668




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1117_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1117
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2004
                           PA0322_tr
                           translation of PA0322
                           464
                           99.56
                           99.78
                           0
                           2289.0
     

     
     
68245
                           gb|AAG03711.1|AE004470_5
                           (AE004470) probable transporter [Pseudomonas aeruginosa PAO1]
                           464
                           99.56
                           99.78
                           0
                           2289.0
     

     
     
68246
                           gb|AAN68194.1|AE016452_7
                           (AE016783) amino acid transporter, putative [Pseudomonas putida KT2440]
                           478
                           48.32
                           65.69
                           22
                           1074.0
     

     
     
68248
                           gb|AAN66853.1|AE016313_12
                           (AE016778) amino acid transporter, putative [Pseudomonas putida KT2440]
                           470
                           43.61
                           59.57
                           26
                           950.0
     

     
     
68247
                           gb|AAG06985.1|AE004780_4
                           (AE004780) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           467
                           43.04
                           59.95
                           30
                           968.0
     

     






      

          
GC ORFID: 44119How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0322Glimmer Score: 

          
Start: 6178369Stop: 6176975

          
Length: 1395


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0322 translation of PA0322Homolog Bit Score 886.0

          
Other Homologs:  t_PA3597 (ORF: BLASTX 376.0), t_PA2041 (ORF: BLASTX 352.0), t_PA0322 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAGCCAACGCAACAACGGCATCCTCATCGGCGGCAAGCGCCCCGAGTACGTCCACAGCGCCCAGGGC 
ACCGGCCTGCGGCGCATCCTCGGGCTCCCCGCCCTGGTCTTCTTCGGGCTGGTCTACATGGTTCCGCTGACC 
ATGTTCACCACCTACGGGGTAGTCACCGAGATCACCGGCGGTCGCACCGCCAGCGCCTACCTGATCACCCTG 
GCGGCGATGCTCTTCACCGCCTTTTCCTACAGCTTCATGGTGAAGAAATATCCCATCGCCGGCTCGGCCTAT 
TCCTATACCAGCCTCAGCTTCGGCCCCTGCGTCGGCTTCCTCGCCGGCTGGTCGCTGCTGCTCGACTACCTG 
TTCCTGCCGATGATCAACTACCTGCTCATCGGCCTGTTCCTCAACATCGCCTTCCCGATGGTGCCGGCCTGG 
GTCTTCGTGCTCACGGCGATCGGCCTGGTCACCGTGCTCAACGTGATCGGCATCAGCTCGGTGGCCGGCATG 
AGCAACGTGATCGTCGGCGCCCAGTTCGTCTTCGCCGTGGTGTTCGTCGCCATGGCGGTCAAGCACCTGGCC 
GGCATCCCCTCGCTGGACCTGAGCCTGCCCTTCGTCGGCGACGGCAGCCAGCCGGGCTTCGCCCCGTTGATG 
GCCGGCGCGGCGGTGCTGTGCCTGTCGTTCCTCGGCTTCGACGCGGTCTCGACCCTGGCCGAGGAAACCCGC 
GACCCGCAACGCGACATCCCGCGCGCCATCGTCATCACCACGGTCGGCGCCGGCCTGCTGTTCACCGTGCTG 
GCGGTCTTCAGCCAACTGGTGTTCCCCGGCAGCGTATTCCAGGACGCCGAGTCGGCGGCCAACGAAGTGATG 
CTGGCGGCCGGCGGCAAGTTCCTCGCCAGCTTCTTCACCGCCGCCTACGTCGCCGGCGCCGCCGGCTCGGCA 
CTGGCCTCGCAGGCCTCGGTGTCGCGCATCCTCTACAGCATGGGCCGCGACGGCATCCTGCCGCGGCGCGTG 
TTCGGCAGCCTCTCGGAGCGCTTCAAGACGCCAGTGATCGCGATCCTGGTGGTCTCGGTGATTTCCCTGCTG 
GCGGTGGTCATCGACCTCACCACCCTGGCCTCGATGATCAGCTTCGGCGCGCTGGTGGCGTTCTCCGCGGTG 
AACCTGGCGGTGATCCGCAGCTACCTGCTGCTCGACGGCCGCCGCGCCCCGCGCGACCTGCTGCGCTACGGG 
CTGGTGCCGGCCATCGGCCTGGGCCTGACCCTGTGGCTGTGGACCAGCCTCTCGGCGCTGACCCTGGTGATC 
GGCCTGACCTGGTTCGCCGCCGGCCTCGCCTACCTGGCGTTGCATACCGGCGGTTTCCGCCGCAAGGCGCCG 
ACCGTGACCTTCTCCGAACAGAACTGA