ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1116

TrivialName: PA14_72020

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_72020

PAO1 Ortholog Locus: PA5456

Sequence Length: 1302

Protein Length: 433

Start: 6419941

Stop: 6421242

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08841.1|AE004958_11 (AE004958) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 431/433 (99%), Positives = 432/433 (99%)

Sequence:

ATGCTGATCATCATCCACTCcGAGACCAACAAGACCACCATCCGGCAGAACCTCGGGCGCCCGGAGTACAGC
TATTACTTCGTCCTCAAGGAATTCCGTCCGCTGCTGGAAGAGATCGGCCAGGTGGTCGAAGTCAGCGATCCC
GACGAACTGGTGGACCGCCTCTACCACGACTGCCGCAAGCGCGGCGAACCCTGCGTCTTCCTCTCCTTCTCG
CCGCCCCATCGCACGCCGATCCACCATGCCTGCCCAACCATCCCGGTGTTCGCCTGGGAGTTCAGCACCCTG
CCCAGCGAAACCTGGCACGGCGAACCGCGCCACGACTGGCGACACGTGCTGCGCCACAGCGGACGGGCCATC
ACCCATTCCAGCTTCACGGTCGACGTGGTGCGCGCCGCCATGGGTCGCGACTACCCGGTACTGAGCGTGCCG
GCGCCGGTCTGGGATCGCTTCGCCAACCGCGCCTCGCAGCAGGCGGGCCGTCCCGAAGCCCGGGATGTGCGC
CTGCGCCTGGACGGCCTGCTGGTGGACAGCCGCCAGCTGGACCTGGCCGTCCATGCCGACCCCGAGCCCTCG
GCGGAGGTCCTGGCCCTGCCGGACCGCGCGGCGAAACAGGTCGAGCTGAGCCTCGACGGGGTCATCTACACC
TCGGTGTTCAACCCCTACGACGGGCGCAAGAACTGGCAGGACATGATCAGCGCGTTCTGCGCCACCTTCCGC
GACGAGCCCGACGCCACCCTGGTGCTGAAACTGACCCACCACAACGTCGGCGAAGCGCTGGCCGACATGCTT
CACCACCTGTACAAGAACCAGTCCTACCGCTGCCGCATCGTGCTGATCCACGGCTACCTCGCCGACCCGGAC
TACGAGCGGCTGGTCGAGGCCACCAGCTACGTGGTGAACACCTCCTACGGCGAAGGCCAATGCCTGCCGCTG
ATGGAGTTCATGTCCAGCGGCAAGCCGGCCGTGGCTCCGCGCAATACCGCGATGATCGACTACATCGACGCC
GACAACGCCTTCATCGTCGACTCCTCGGAAGAAGCCACCGCATGGCCCCACGACCCGCGCGCGGCCTACCGC
ACGCTGCGCTACATCACCGACTGGGAGTCGCTGTGCCGGGCCTACCGGGCCAGTTTCGAGGTCGCTCGCCAG
GAGCCGGAGCGCTACGCACGCATGTCCGCGCATGCCAGCGCCAGCCTCGAACGCTTCTGCAGCCGCAAGCTG
GCCGTGGAGCGCCTGCGTCGCTTCCTCGACGAAGCGGCACAAGGCGACCCCGCCGCCTTGCAAAGCATCCCG
GCATGA

Translation:

MLIIIHSETNKTTIRQNLGRPEYSYYFVLKEFRPLLEEIGQVVEVSDPDELVDRLYHDCRKRGEPCVFLSFS
PPHRTPIHHACPTIPVFAWEFSTLPSETWHGEPRHDWRHVLRHSGRAITHSSFTVDVVRAAMGRDYPVLSVP
APVWDRFANRASQQAGRPEARDVRLRLDGLLVDSRQLDLAVHADPEPSAEVLALPDRAAKQVELSLDGVIYT
SVFNPYDGRKNWQDMISAFCATFRDEPDATLVLKLTHHNVGEALADMLHHLYKNQSYRCRIVLIHGYLADPD
YERLVEATSYVVNTSYGEGQCLPLMEFMSSGKPAVAPRNTAMIDYIDADNAFIVDSSEEATAWPHDPRAAYR
TLRYITDWESLCRAYRASFEVARQEPERYARMSAHASASLERFCSRKLAVERLRRFLDEAAQGDPAALQSIP
A*

AnnotationID:1125 GeneID:1116

AnnotatorUID: diggins

Modification Date/Time: 2005-03-21 05:05:22

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA5456

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2235

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19377

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34641

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1116_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1116

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2002 PA5456_tr translation of PA5456 433 99.53 99.76 0 2289.0

68243 gb|AAG08841.1|AE004958_11 (AE004958) hypothetical protein PA5456 [Pseudomonas aeruginosa PAO1] 433 99.53 99.76 0 2289.0

2003 PA5455_tr translation of PA5455 544 37.50 49.81 113 953.0

68244 gb|AAG08840.1|AE004958_10 (AE004958) hypothetical protein PA5455 [Pseudomonas aeruginosa PAO1] 544 37.50 49.81 113 953.0

GC ORFID: `44118`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5456`	Glimmer Score:
Start: `5683630`	Stop: `5684931`
Length: `1302`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5456 translation of PA5456`	Homolog Bit Score `886.0`
Other Homologs: `t_PA5456 (ORF: GLIMMER)`
GC ORF Sequence
ATGCTGATCATCATCCACTCcGAGACCAACAAGACCACCATCCGGCAGAACCTCGGGCGCCCGGAGTACAGC TATTACTTCGTCCTCAAGGAATTCCGTCCGCTGCTGGAAGAGATCGGCCAGGTGGTCGAAGTCAGCGATCCC GACGAACTGGTGGACCGCCTCTACCACGACTGCCGCAAGCGCGGCGAACCCTGCGTCTTCCTCTCCTTCTCG CCGCCCCATCGCACGCCGATCCACCATGCCTGCCCAACCATCCCGGTGTTCGCCTGGGAGTTCAGCACCCTG CCCAGCGAAACCTGGCACGGCGAACCGCGCCACGACTGGCGACACGTGCTGCGCCACAGCGGACGGGCCATC ACCCATTCCAGCTTCACGGTCGACGTGGTGCGCGCCGCCATGGGTCGCGACTACCCGGTACTGAGCGTGCCG GCGCCGGTCTGGGATCGCTTCGCCAACCGCGCCTCGCAGCAGGCGGGCCGTCCCGAAGCCCGGGATGTGCGC CTGCGCCTGGACGGCCTGCTGGTGGACAGCCGCCAGCTGGACCTGGCCGTCCATGCCGACCCCGAGCCCTCG GCGGAGGTCCTGGCCCTGCCGGACCGCGCGGCGAAACAGGTCGAGCTGAGCCTCGACGGGGTCATCTACACC TCGGTGTTCAACCCCTACGACGGGCGCAAGAACTGGCAGGACATGATCAGCGCGTTCTGCGCCACCTTCCGC GACGAGCCCGACGCCACCCTGGTGCTGAAACTGACCCACCACAACGTCGGCGAAGCGCTGGCCGACATGCTT CACCACCTGTACAAGAACCAGTCCTACCGCTGCCGCATCGTGCTGATCCACGGCTACCTCGCCGACCCGGAC TACGAGCGGCTGGTCGAGGCCACCAGCTACGTGGTGAACACCTCCTACGGCGAAGGCCAATGCCTGCCGCTG ATGGAGTTCATGTCCAGCGGCAAGCCGGCCGTGGCTCCGCGCAATACCGCGATGATCGACTACATCGACGCC GACAACGCCTTCATCGTCGACTCCTCGGAAGAAGCCACCGCATGGCCCCACGACCCGCGCGCGGCCTACCGC ACGCTGCGCTACATCACCGACTGGGAGTCGCTGTGCCGGGCCTACCGGGCCAGTTTCGAGGTCGCTCGCCAG GAGCCGGAGCGCTACGCACGCATGTCCGCGCATGCCAGCGCCAGCCTCGAACGCTTCTGCAGCCGCAAGCTG GCCGTGGAGCGCCTGCGTCGCTTCCTCGACGAAGCGGCACAAGGCGACCCCGCCGCCTTGCAAAGCATCCCG GCATGA