ViewGene
Locus Name:
GeneID:
Location:

GeneID:1115
TrivialName: PA14_38360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38360
PAO1 Ortholog Locus:PA2022
Sequence Length:1362
Protein Length:453
Start: 3420507
Stop: 3419146
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05410.1|AE004628_8 (AE004628) probable nucleotide sugar dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 447/453 (98%), Positives = 452/453 (99%)
Sequence:
ATGCGGCTATGCGTGATTGGTGCGGGCTATGTGGGACTGGTGACGGCGGCCTGTTTCGCCGAGATGGGCAAC
CAGGTGCGCTGCGTGGAGCGCGACCGCGAGCGGGTCGCGCGGCTGaGACGCGGCGAGATGCCGATCTACGAG
CCGGGCCTGGAAAGCATCCTGCGCGATCAGCTGGACGCCGCCCGCCTGACCTTCACCGCCAGCCTGGCGGAA
GGCCTGGCCGACGCCGAGGTGGTGTTCATCGCCGTCGGCACGCCGTGCGGCGAGGACGGCTCGGCCGACCTC
AGCCACGTGATGGCGGTCGCCGAGCAACTTGGCGCGCAACTGCGCCAGGCCTGCATCGTGGTCAACAAGTCG
ACCGTGCCGGTGGGCACCGCCGAACGGGTCGAAGAGATCATCCGCCTGGGCCTGGCGCGCCGGCGCAAGCGC
TTCCGGGTGGCGGTGGCGAGCAATCCGGAGTTCCTCAAGGAAGGCTCGGCGGTGGACGACTTCAGGCGCCCG
GACCGGGTCATCATCGGCAGCGCCGAGGCGCAGGCCGGGGAAACCCTGCGCCAGCTCTACGCGCCGTTCCTG
CGCAATCACGAACGGGTCCTGCTGATGGGGCGCCGCGAGGCCGAGTTCAGCAAGTACGCGGCCAATGCCTTC
CTCGCCACCAAGATTTCCTTCATGAACGAGATGGCCGGGCTGTGCGCCCTCACCGGCGTCGACATCGAGGAC
GTGCGCCGTGGCATGGGCAGCGACAAGCGCATCGGCACCCATTTCATCTACGCCGGCTGCGGCTACGGCGGC
TCGTGCTTTCCCAAGGACGTCCGCGCGCTGATCCGCAGCGCCGAGCAACAGGGCTTCGACAGCCAGATACTG
CGTGCGGTGGAAGCGCGCAACGCGCGGCAGAAGGAACTGCTCTTCGAGACCCTCGGCGAGCTGTTCCAGGGA
CGCTGGCAAGGGCGCACGGTGGCGCTCTGGGGGCTGGCCTTCAAGCCGGGTACCGACGACCTGCGCGAGGCG
CCGAGCCTGGTCCTGCTGGAGGCGCTGCTGCGCCACGGGGTGCGGGTCAGGGCCCATGACCCGGTGGCCAAC
GCCGGGGTCGCGGCACGCTATCCGGACGCGCTGGCGTGCGCCCAGTTGACGCTCCACGACTCGCCCTACGCC
GCCGTCGAGGGCGCCGATGCCCTGGTGCTGGTGACCGAGTGGAAACAGTTCCGCCAGCCGGACTTCCAGAAA
ATCCGTGGATCCATGCGAACTCCCCTGTTGGTCGACGGTCGGAATCTCTACGCACCGGCGCGGATGGCGGAA
CTGGGCTTCATCTACCAGGGCATAGGACGTCCAAGGGCCGGGCATTGTAAGGCGAGCGCAGCCTGA
Translation:
MRLCVIGAGYVGLVTAACFAEMGNQVRCVERDRERVARLRRGEMPIYEPGLESILRDQLDAARLTFTASLAE
GLADAEVVFIAVGTPCGEDGSADLSHVMAVAEQLGAQLRQACIVVNKSTVPVGTAERVEEIIRLGLARRRKR
FRVAVASNPEFLKEGSAVDDFRRPDRVIIGSAEAQAGETLRQLYAPFLRNHERVLLMGRREAEFSKYAANAF
LATKISFMNEMAGLCALTGVDIEDVRRGMGSDKRIGTHFIYAGCGYGGSCFPKDVRALIRSAEQQGFDSQIL
RAVEARNARQKELLFETLGELFQGRWQGRTVALWGLAFKPGTDDLREAPSLVLLEALLRHGVRVRAHDPVAN
AGVAARYPDALACAQLTLHDSPYAAVEGADALVLVTEWKQFRQPDFQKIRGSMRTPLLVDGRNLYAPARMAE
LGFIYQGIGRPRAGHCKASAA*
AnnotationID:1124GeneID:1115
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 21:09:19
Gene Name:
Confidence Code:3
GeneProduct:putative UDP-glucose 6-dehydrogenas
Cell Localization:()
Synonyms:ugd
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:putative nucleotide sugar dehydrogenase
Functional Category Confidence Code:5
COGs:COG1004
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM72410.1| (AE012878) UDP-glucose/GDP-mannose dehydrogenase family protein
           [Chlorobium tepidum TLS]
          Length = 445

 Score =  465 bits (1196), Expect = e-130
 Identities = 239/442 (54%), Positives = 305/442 (69%), Gaps = 3/442 (0%)

>emb|CAE35178.1| (BX640451) putative UDP-glucose 6-dehydrogenase [Bordetella
           bronchiseptica]
          Length = 440

 Score =  459 bits (1181), Expect = e-128
 Identities = 232/442 (52%), Positives = 302/442 (68%), Gaps = 3/442 (0%)

>gb|AAM85709.1|AE013818_3 (AE013818) putative UDP-glucose dehydrogenase [Yersinia pestis KIM]
          Length = 457

 Score =  433 bits (1113), Expect = e-120
 Identities = 218/444 (49%), Positives = 304/444 (68%), Gaps = 5/444 (1%)








 
Structural Features:
COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase 
[Cell envelope biogenesis, outer membrane]
CD-Length = 414 residues,  99.8% aligned
Score =  567 bits (1462), Expect = 1e-162
Identities = 217/427 (50%), Positives = 284/427 (66%), Gaps = 14/427 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2233




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19375




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32695




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1115_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1115
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2000
                           PA2022_tr
                           translation of PA2022
                           453
                           98.67
                           99.77
                           0
                           2289.0
     

     
     
68170
                           gb|AAG05410.1|AE004628_8
                           (AE004628) probable nucleotide sugar dehydrogenase [Pseudomonas aeruginosa PAO1]
                           453
                           98.67
                           99.77
                           0
                           2289.0
     

     
     
68171
                           emb|CAA09327.1|
                           (AJ010734) UDP-glucose 6-dehydrogenase [Pseudomonas aeruginosa]
                           474
                           78.69
                           81.22
                           43
                           1790.0
     

     
     
68174
                           dbj|BAB51744.1|
                           (AP003006) UDP-glucose dehydrogenase [Mesorhizobium loti]
                           457
                           53.82
                           67.83
                           18
                           1201.0
     

     
     
68172
                           gb|AAM72410.1|
                           (AE012878) UDP-glucose/GDP-mannose dehydrogenase family protein [Chlorobium tepidum TLS]
                           454
                           53.08
                           67.62
                           10
                           1197.0
     

     






      

          
GC ORFID: 44117How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2022Glimmer Score: 

          
Start: 1533403Stop: 1534764

          
Length: 1362


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2022 translation of PA2022Homolog Bit Score 886.0

          
Other Homologs:  t_PA3559 (ORF: BLASTX 452.0), psyr_15may02_Scaffold16_revised_gene2590 (ORF: BLASTX 424.0), psyr_15may02_Scaffold1_revised_gene705 (ORF: BLASTX 338.0), t_PA2022 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGCTATGCGTGATTGGTGCGGGCTATGTGGGACTGGTGACGGCGGCCTGTTTCGCCGAGATGGGCAAC 
CAGGTGCGCTGCGTGGAGCGCGACCGCGAGCGGGTCGCGCGGCTGaGACGCGGCGAGATGCCGATCTACGAG 
CCGGGCCTGGAAAGCATCCTGCGCGATCAGCTGGACGCCGCCCGCCTGACCTTCACCGCCAGCCTGGCGGAA 
GGCCTGGCCGACGCCGAGGTGGTGTTCATCGCCGTCGGCACGCCGTGCGGCGAGGACGGCTCGGCCGACCTC 
AGCCACGTGATGGCGGTCGCCGAGCAACTTGGCGCGCAACTGCGCCAGGCCTGCATCGTGGTCAACAAGTCG 
ACCGTGCCGGTGGGCACCGCCGAACGGGTCGAAGAGATCATCCGCCTGGGCCTGGCGCGCCGGCGCAAGCGC 
TTCCGGGTGGCGGTGGCGAGCAATCCGGAGTTCCTCAAGGAAGGCTCGGCGGTGGACGACTTCAGGCGCCCG 
GACCGGGTCATCATCGGCAGCGCCGAGGCGCAGGCCGGGGAAACCCTGCGCCAGCTCTACGCGCCGTTCCTG 
CGCAATCACGAACGGGTCCTGCTGATGGGGCGCCGCGAGGCCGAGTTCAGCAAGTACGCGGCCAATGCCTTC 
CTCGCCACCAAGATTTCCTTCATGAACGAGATGGCCGGGCTGTGCGCCCTCACCGGCGTCGACATCGAGGAC 
GTGCGCCGTGGCATGGGCAGCGACAAGCGCATCGGCACCCATTTCATCTACGCCGGCTGCGGCTACGGCGGC 
TCGTGCTTTCCCAAGGACGTCCGCGCGCTGATCCGCAGCGCCGAGCAACAGGGCTTCGACAGCCAGATACTG 
CGTGCGGTGGAAGCGCGCAACGCGCGGCAGAAGGAACTGCTCTTCGAGACCCTCGGCGAGCTGTTCCAGGGA 
CGCTGGCAAGGGCGCACGGTGGCGCTCTGGGGGCTGGCCTTCAAGCCGGGTACCGACGACCTGCGCGAGGCG 
CCGAGCCTGGTCCTGCTGGAGGCGCTGCTGCGCCACGGGGTGCGGGTCAGGGCCCATGACCCGGTGGCCAAC 
GCCGGGGTCGCGGCACGCTATCCGGACGCGCTGGCGTGCGCCCAGTTGACGCTCCACGACTCGCCCTACGCC 
GCCGTCGAGGGCGCCGATGCCCTGGTGCTGGTGACCGAGTGGAAACAGTTCCGCCAGCCGGACTTCCAGAAA 
ATCCGTGGATCCATGCGAACTCCCCTGTTGGTCGACGGTCGGAATCTCTACGCACCGGCGCGGATGGCGGAA 
CTGGGCTTCATCTACCAGGGCATAGGACGTCCAAGGGCCGGGCATTGTAAGGCGAGCGCAGCCTGA