ViewGene

Locus Name:
GeneID:
Location:

GeneID:1114
TrivialName: PA14_08540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08540
PAO1 Ortholog Locus:PA0667
Sequence Length:1344
Protein Length:447
Start: 731062
Stop: 729719
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04056.1|AE004501_8 (AE004501) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 447/447 (100%), Positives = 447/447 (100%)
Sequence:
GTGTTCCCCTCGAGCGAAGTCGAGGCCAAGAGGACCACGCTCAATCTGGAGCTTGAAAGCAACACCGATCGC
CTCCTTCAGGAGAAAGACGACCTCCTGCCGCAATCGGTCACCAATTCCAGCGACGAAGGCACGCCTTTCGCT
CAGGTAGAAGGCGCCTCCGACGACAACACCGCCGAGCAAGACTCGGACAAGCCGGGCGCATCTGTAGCCGAT
GCCGACACCAAGCCCGTCGATCCCGAGTGGAAGACCATCACCGTCGCCAGTGGCGATACGCTGTCGACCGTA
TTCACCAAGGCAGGCCTTTCCACCTCGGCCATGCACGACATGCTGACCAGCAGCAAGGATGCCAAGCGCTTC
ACCCATCTGAAGGTCGGCCAGGAGGTCAAGCTCAAGCTCGACCCCAAAGGAGAGCTGCAGGCGCTGCGAGTC
AAGCAGAGCGAACTCGAGACCATCGGCCTGGACAAGACCGACAAGGGCTACTCCTTCAAACGCGAGAAGGCC
CAGATCGACCTGCATACCGCCTATGCCCATGGCCGCATCACCAGCTCGCTGTTCGTTGCCGGTCGTAACGCC
GGCCTGCCCTATAACCTGGTCACGTCGCTGTCGAACATCTTCGGCTACGACATCGACTTCGCCCTCGATCTG
CGTGAAGGCGACGAGTTCGACGTGATCTACGAACAGCACAAGGTCAACGGCAAGCAAGTGGCGACCGGCAAT
ATCCTCGCCGCCCGCTTCGTCAACCGTGGCAAGACCTACACCGCCGTGCGCTATACCAACAAGCAGGGCAAT
ACCAGCTACTACCGCGCCGACGGCTCCAGCATGCGCAAGGCATTCATCCGTACGCCGGTGGATTTCGCCCGC
ATCAGCTCGCGCTTCTCCCTGGGCCGCCGCCACCCGATCCTGAACAAGATCCGCGCGCACAAGGGCGTCGAC
TACGCTGCCCCCATCGGCACACCGATCAAGGCCACCGGAGACGGCAAGATCCTCGAAGCCGGACGCAAGGGG
GGCTACGGCAACGCCGTGGTGATCCAGCACGGCCAGCGCTATCGGACCATCTACGGACACATGAGCCGCTTC
GCCAAGGGTATCCGCGCCGGTACCAGCGTGAAGCAGGGCCAGATCATCGGTTACGTAGGCATGACGGGCCTG
GCCACCGGCCCGCACCTGCACTACGAGTTCCAGATCAATGGCCGTCACGTCGATCCGCTGAGCGCCAAGCTG
CCCATGGCGGACCCGCTCGGTGGCGCAGATCGCAAGCGCTTCATGGCGCAGACCCAGCCGATGATCGCGCGC
ATGGATCAGGAGAAGAAAACCCTCCTGGCCCTGAACAAGCAGCGCTGA
Translation:
MFPSSEVEAKRTTLNLELESNTDRLLQEKDDLLPQSVTNSSDEGTPFAQVEGASDDNTAEQDSDKPGASVAD
ADTKPVDPEWKTITVASGDTLSTVFTKAGLSTSAMHDMLTSSKDAKRFTHLKVGQEVKLKLDPKGELQALRV
KQSELETIGLDKTDKGYSFKREKAQIDLHTAYAHGRITSSLFVAGRNAGLPYNLVTSLSNIFGYDIDFALDL
REGDEFDVIYEQHKVNGKQVATGNILAARFVNRGKTYTAVRYTNKQGNTSYYRADGSSMRKAFIRTPVDFAR
ISSRFSLGRRHPILNKIRAHKGVDYAAPIGTPIKATGDGKILEAGRKGGYGNAVVIQHGQRYRTIYGHMSRF
AKGIRAGTSVKQGQIIGYVGMTGLATGPHLHYEFQINGRHVDPLSAKLPMADPLGGADRKRFMAQTQPMIAR
MDQEKKTLLALNKQR*
AnnotationID:1123GeneID:1114
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 18:06:34
Gene Name:
Confidence Code:3
GeneProduct:putative metallopeptidase
Cell Localization:()
Synonyms:PA0667
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01551
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66065.1|AE016235_4 (AE016775) peptidase, M23/M37 family [Pseudomonas putida KT2440]
          Length = 475

 Score =  554 bits (1428), Expect = e-157
 Identities = 281/447 (62%), Positives = 348/447 (77%), Gaps = 7/447 (1%)

>dbj|BAB83598.1| (AB066296) toluene resistance protein Trg3 [Pseudomonas putida]
          Length = 473

 Score =  554 bits (1428), Expect = e-157
 Identities = 281/447 (62%), Positives = 348/447 (77%), Gaps = 7/447 (1%)

>gb|AAO54149.1| (AE016858) peptidase, M23/M37 family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 474

 Score =  542 bits (1396), Expect = e-153
 Identities = 270/450 (60%), Positives = 342/450 (76%), Gaps = 12/450 (2%)

Structural Features:
pfam01551, Peptidase_M37, Peptidase family M23/M37. 
CD-Length = 83 residues,  98.8% aligned
Score =  110 bits (277), Expect = 3e-25
Identities = 67/217 (30%), Positives = 99/217 (45%), Gaps = 7/217 (3%)
Genomic Context:
Comment:
ReferenceID:14283
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19373
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34618
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1114_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1114

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1999 PA0667_tr translation of PA0667 447 99.99 99.99 0 2291.0
68140 gb|AAG04056.1|AE004501_8 (AE004501) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 447 99.77 99.99 0 2288.0
68142 dbj|BAB83598.1| (AB066296) toluene resistance protein Trg3 [Pseudomonas putida] 481 58.83 72.76 42 1441.0
68141 gb|AAN66065.1|AE016235_4 (AE016775) peptidase, M23/M37 family [Pseudomonas putida KT2440] 483 58.59 72.46 44 1441.0
68143 gb|AAO54149.1| (AE016858) peptidase, M23/M37 family [Pseudomonas syringae pv. tomato str. DC3000] 483 56.10 70.80 45 1411.0
GC ORFID: 44116How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0667Glimmer Score:
Start: 6532405Stop: 6531062
Length: 1344
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0667 translation of PA0667Homolog Bit Score 887.0
Other Homologs: psyr_15may02_Scaffold14_revised_gene2392 (ORF: BLASTX 551.0), t_PA0667 (ORF: GLIMMER)
GC ORF Sequence
GTGTTCCCCTCGAGCGAAGTCGAGGCCAAGAGGACCACGCTCAATCTGGAGCTTGAAAGCAACACCGATCGC
CTCCTTCAGGAGAAAGACGACCTCCTGCCGCAATCGGTCACCAATTCCAGCGACGAAGGCACGCCTTTCGCT
CAGGTAGAAGGCGCCTCCGACGACAACACCGCCGAGCAAGACTCGGACAAGCCGGGCGCATCTGTAGCCGAT
GCCGACACCAAGCCCGTCGATCCCGAGTGGAAGACCATCACCGTCGCCAGTGGCGATACGCTGTCGACCGTA
TTCACCAAGGCAGGCCTTTCCACCTCGGCCATGCACGACATGCTGACCAGCAGCAAGGATGCCAAGCGCTTC
ACCCATCTGAAGGTCGGCCAGGAGGTCAAGCTCAAGCTCGACCCCAAAGGAGAGCTGCAGGCGCTGCGAGTC
AAGCAGAGCGAACTCGAGACCATCGGCCTGGACAAGACCGACAAGGGCTACTCCTTCAAACGCGAGAAGGCC
CAGATCGACCTGCATACCGCCTATGCCCATGGCCGCATCACCAGCTCGCTGTTCGTTGCCGGTCGTAACGCC
GGCCTGCCCTATAACCTGGTCACGTCGCTGTCGAACATCTTCGGCTACGACATCGACTTCGCCCTCGATCTG
CGTGAAGGCGACGAGTTCGACGTGATCTACGAACAGCACAAGGTCAACGGCAAGCAAGTGGCGACCGGCAAT
ATCCTCGCCGCCCGCTTCGTCAACCGTGGCAAGACCTACACCGCCGTGCGCTATACCAACAAGCAGGGCAAT
ACCAGCTACTACCGCGCCGACGGCTCCAGCATGCGCAAGGCATTCATCCGTACGCCGGTGGATTTCGCCCGC
ATCAGCTCGCGCTTCTCCCTGGGCCGCCGCCACCCGATCCTGAACAAGATCCGCGCGCACAAGGGCGTCGAC
TACGCTGCCCCCATCGGCACACCGATCAAGGCCACCGGAGACGGCAAGATCCTCGAAGCCGGACGCAAGGGG
GGCTACGGCAACGCCGTGGTGATCCAGCACGGCCAGCGCTATCGGACCATCTACGGACACATGAGCCGCTTC
GCCAAGGGTATCCGCGCCGGTACCAGCGTGAAGCAGGGCCAGATCATCGGTTACGTAGGCATGACGGGCCTG
GCCACCGGCCCGCACCTGCACTACGAGTTCCAGATCAATGGCCGTCACGTCGATCCGCTGAGCGCCAAGCTG
CCCATGGCGGACCCGCTCGGTGGCGCAGATCGCAAGCGCTTCATGGCGCAGACCCAGCCGATGATCGCGCGC
ATGGATCAGGAGAAGAAAACCCTCCTGGCCCTGAACAAGCAGCGCTGA