ViewGene
Locus Name:
GeneID:
Location:

GeneID:1113
TrivialName: PA14_04610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04610
PAO1 Ortholog Locus:PA0352
Sequence Length:1386
Protein Length:461
Start: 409988
Stop: 408603
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03741.1|AE004473_3 (AE004473) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 461/461 (100%), Positives = 461/461 (100%)
Sequence:
ATGAGTTCCCTGCAAAGCCCGTCGGACGCCAGCGCCCGCAACGACCTGGTCTATGGCCTGGACGACCGTCCC
AGCGCTCCCATCGCCCTGCTCGCCGCCCTCCAGCACCTGCTGGCGATCATCGTGCCGATCGTTACCCCCGGC
CTGCTGATCTGCCAGGCGCTGGGCGTATCGCCGCGCGACACCAATCTGATCGTGTCGATGTCGCTGGTGATC
TCCGGCATCGCCACCTTCGTCCAGTGCAAGCGCTTCGGCCCGTTCGGCGCCGGACTGTTGATCGTCCAGGGC
ACCAGCTTCAACTTCGTCGGCCCGCTGATCGCCGGCGGGGCGCTGATGGTCAAGCAGGGCACGCCGGTGGAA
AGCGTGATGGCGGCGATCTTCGGCGTGGTCATCGCCGGCTCCTTCGTCGAGATGGGCATCTCGCGCATACTG
CCGTTCGTCAAGCGGCTGATCACCCCGCTGGTGACCGGCATCGTCGTGCTGATGATCGGCCTGACCCTGATC
AAGGTCGGCCTGATCAGCATGGGCGGCGGCTTCTCGGCGATGTCCAACGGCACCTTCGCCAACGGCGAGAAC
CTGCTGCTGTCCGGCGTGGTGCTGGGCATCATCGTGGTGCTCAATCGCATCCCGGTGGTATGGATGCGCAGT
TGCGCCATCGTCATCGCCCTGGCCGTCGGCTACGCGCTGGCCGGCTACCTCGGCCGCCTGGACTTCACCGGC
ATGCACCAGGCCGAGCTGTTCCAGGTACCGACCCCGCTGCACTTCGGCCTGGACTTCTCCTGGCCGCTGTTC
ATCCCGATGCTGGTGATCTACCTGGTCACCTCCCTGGAAGCCATCGGCGACGTCACCGCCACCAGCAAGGTG
TCGAAGCAACCGGTGGAAGGCCCGCTGTGGATGCAGCGGATCAAGGGCGGCGTGCTGGTCAACGGCGCCAAC
TCGTTCCTCGCCGGTATCTTCAATACCTTCCCCAGCTCGGTGTTCGCCCAGAACAACGGGGTGATCCAGCTC
ACCGGCGTGGCCAGCCGCTACGTCGGCCTGTGGATCGCCGCCATGCTGGTCCTGCTCGGCCTGTTCCCGAGC
GTCGCCGGGGTCATCCAGGCGGTGCCGGAACCGGTACTGGGCGGCGCGGCGATGGTGATGTTCGGCGCGGTG
GCCGCTTCGGGCATCAACATCCTCGCCGGCATCCAGCTGGACCGCCGCGCCCTGCTGATCATCGCCGTGTCC
CTGGCCCTCGGCCTGGGCGTTTCGCAGGTGCCGGAGTTCCTCGCGCACATGCCCGCGGCGCTGCGCAACGTG
CTGGAATCCGGGGTCGCCACCGGCGGCATCTGCGCCCTGCTACTGAACTGGTTCCTGCCGGAAAGCCCGGTC
CAGAAGGCCGGACACTGA
Translation:
MSSLQSPSDASARNDLVYGLDDRPSAPIALLAALQHLLAIIVPIVTPGLLICQALGVSPRDTNLIVSMSLVI
SGIATFVQCKRFGPFGAGLLIVQGTSFNFVGPLIAGGALMVKQGTPVESVMAAIFGVVIAGSFVEMGISRIL
PFVKRLITPLVTGIVVLMIGLTLIKVGLISMGGGFSAMSNGTFANGENLLLSGVVLGIIVVLNRIPVVWMRS
CAIVIALAVGYALAGYLGRLDFTGMHQAELFQVPTPLHFGLDFSWPLFIPMLVIYLVTSLEAIGDVTATSKV
SKQPVEGPLWMQRIKGGVLVNGANSFLAGIFNTFPSSVFAQNNGVIQLTGVASRYVGLWIAAMLVLLGLFPS
VAGVIQAVPEPVLGGAAMVMFGAVAASGINILAGIQLDRRALLIIAVSLALGLGVSQVPEFLAHMPAALRNV
LESGVATGGICALLLNWFLPESPVQKAGH*
AnnotationID:1122GeneID:1113
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 18:06:12
Gene Name:
Confidence Code:3
GeneProduct:putative xanthine/uracil permease family protein
Cell Localization:()
Synonyms:yicE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative transport protein
Functional Category Confidence Code:5
COGs:COG2233,pfam00860
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69586.1|AE016592_5 (AE016788) xanthine/uracil permease family protein [Pseudomonas
           putida KT2440]
          Length = 459

 Score =  795 bits (2053), Expect = 0.0
 Identities = 408/452 (90%), Positives = 428/452 (94%)

>gb|AAP19052.1| (AE016991) putative transport protein [Shigella flexneri 2a str.
           2457T]
          Length = 463

 Score =  503 bits (1295), Expect = e-141
 Identities = 253/457 (55%), Positives = 345/457 (75%), Gaps = 5/457 (1%)

>gb|AAN82915.1|AE016769_30 (AE016769) Putative purine permease yicE [Escherichia coli CFT073]
          Length = 466

 Score =  503 bits (1295), Expect = e-141
 Identities = 253/457 (55%), Positives = 345/457 (75%), Gaps = 5/457 (1%)






 
Structural Features:
COG2233, UraA, Xanthine/uracil permeases 
[Nucleotide transport and metabolism]
CD-Length = 451 residues,  97.8% aligned
Score =  357 bits (917), Expect = 2e-99
Identities = 193/451 (42%), Positives = 272/451 (60%), Gaps = 13/451 (2%)

pfam00860, Xan_ur_permease, Permease family. 
CD-Length = 389 residues, 100.0% aligned
Score =  223 bits (570), Expect = 3e-59
Identities = 147/400 (36%), Positives = 224/400 (56%), Gaps = 16/400 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2229




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19371




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33692




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1113_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1113
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1997
                           PA0352_tr
                           translation of PA0352
                           461
                           99.99
                           99.99
                           0
                           2291.0
     

     
     
68109
                           gb|AAG03741.1|AE004473_3
                           (AE004473) probable transporter [Pseudomonas aeruginosa PAO1]
                           461
                           99.99
                           99.99
                           0
                           2291.0
     

     
     
68110
                           gb|AAN69586.1|AE016592_5
                           (AE016788) xanthine/uracil permease family protein [Pseudomonas putida KT2440]
                           462
                           88.96
                           93.50
                           4
                           2054.0
     

     
     
68120
                           gb|AAA62007.1|
                           (L10328) o463 [Escherichia coli]
                           470
                           54.68
                           74.25
                           16
                           1299.0
     

     
     
68119
                           gb|AAC76678.1|
                           (AE000443) putative transport protein [Escherichia coli K12]
                           470
                           54.68
                           74.25
                           16
                           1299.0
     

     






      

          
GC ORFID: 44115How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0352Glimmer Score: 

          
Start: 6211330Stop: 6209945

          
Length: 1386


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0352 translation of PA0352Homolog Bit Score 887.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3588 (ORF: BLASTX 424.0), t_PA0166 (ORF: BLASTX 414.0), t_PA0352 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTCCCTGCAAAGCCCGTCGGACGCCAGCGCCCGCAACGACCTGGTCTATGGCCTGGACGACCGTCCC 
AGCGCTCCCATCGCCCTGCTCGCCGCCCTCCAGCACCTGCTGGCGATCATCGTGCCGATCGTTACCCCCGGC 
CTGCTGATCTGCCAGGCGCTGGGCGTATCGCCGCGCGACACCAATCTGATCGTGTCGATGTCGCTGGTGATC 
TCCGGCATCGCCACCTTCGTCCAGTGCAAGCGCTTCGGCCCGTTCGGCGCCGGACTGTTGATCGTCCAGGGC 
ACCAGCTTCAACTTCGTCGGCCCGCTGATCGCCGGCGGGGCGCTGATGGTCAAGCAGGGCACGCCGGTGGAA 
AGCGTGATGGCGGCGATCTTCGGCGTGGTCATCGCCGGCTCCTTCGTCGAGATGGGCATCTCGCGCATACTG 
CCGTTCGTCAAGCGGCTGATCACCCCGCTGGTGACCGGCATCGTCGTGCTGATGATCGGCCTGACCCTGATC 
AAGGTCGGCCTGATCAGCATGGGCGGCGGCTTCTCGGCGATGTCCAACGGCACCTTCGCCAACGGCGAGAAC 
CTGCTGCTGTCCGGCGTGGTGCTGGGCATCATCGTGGTGCTCAATCGCATCCCGGTGGTATGGATGCGCAGT 
TGCGCCATCGTCATCGCCCTGGCCGTCGGCTACGCGCTGGCCGGCTACCTCGGCCGCCTGGACTTCACCGGC 
ATGCACCAGGCCGAGCTGTTCCAGGTACCGACCCCGCTGCACTTCGGCCTGGACTTCTCCTGGCCGCTGTTC 
ATCCCGATGCTGGTGATCTACCTGGTCACCTCCCTGGAAGCCATCGGCGACGTCACCGCCACCAGCAAGGTG 
TCGAAGCAACCGGTGGAAGGCCCGCTGTGGATGCAGCGGATCAAGGGCGGCGTGCTGGTCAACGGCGCCAAC 
TCGTTCCTCGCCGGTATCTTCAATACCTTCCCCAGCTCGGTGTTCGCCCAGAACAACGGGGTGATCCAGCTC 
ACCGGCGTGGCCAGCCGCTACGTCGGCCTGTGGATCGCCGCCATGCTGGTCCTGCTCGGCCTGTTCCCGAGC 
GTCGCCGGGGTCATCCAGGCGGTGCCGGAACCGGTACTGGGCGGCGCGGCGATGGTGATGTTCGGCGCGGTG 
GCCGCTTCGGGCATCAACATCCTCGCCGGCATCCAGCTGGACCGCCGCGCCCTGCTGATCATCGCCGTGTCC 
CTGGCCCTCGGCCTGGGCGTTTCGCAGGTGCCGGAGTTCCTCGCGCACATGCCCGCGGCGCTGCGCAACGTG 
CTGGAATCCGGGGTCGCCACCGGCGGCATCTGCGCCCTGCTACTGAACTGGTTCCTGCCGGAAAGCCCGGTC 
CAGAAGGCCGGACACTGA