ViewGene

Locus Name:
GeneID:
Location:

GeneID:1112
TrivialName: PA14_70760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70760
PAO1 Ortholog Locus:PA5361
Sequence Length:1332
Protein Length:443
Start: 6300460
Stop: 6301791
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08746.1|AE004948_2 (AE004948) two-component sensor PhoR [Pseudomonas aeruginosa PAO1]
Identities = 440/443 (99%), Positives = 441/443 (99%)
Sequence:
ATGCAATCCGTCGTGAACCAAGACTGGCGTGGAGCGCTGATCCGCCACCTGCTTCTCGTGCTGGCCGCCAGC
CTCGTGCTCGGCGTGGTCAGCGGCCATTACGGCTGGGCCCTGGCCCTCGGCCTGGCTCTCTACCTCGGCTGG
ACCCTCTGGCAGCTACTGCGCCTGCACCAGTGGCTGCGCAACCACCAGCCAGACGAGCCACCGCCGGACAGC
TACGGCCTCTGGGGCGAAGTCTTCGACAATATCTACCACCTGCAACGCCGCAACCAGCGCGCCCGTGGCCGC
CTGCAGGCGGTGATCGACCGGATCCAGGAGTCCACCGCGGCCCTGCGTGACGCGGTGATCATGCTCGACAGC
GACGGCAACCTGGAATGGTGGAACCTCGCCGCGGAAAACCTGCTCGGCCTGAAGACCCCGCAGGACGGTGGC
CAGCCGGTGAGCAACCTGATCCGCCATCCGCGCTTCAAGGAATACTTCGACCAGGAGGATTACCGCGAGCCG
CTGGAAATCCCCTCGCCGATCAACGAGCGCCTGCGCCTGCAATTCCACATCACCCTCTACGGCAACCGCGAG
CACCTGATGCTGGTCCGCGACGTCACCCGCGTCCACCAGCTGGAGCAGATGCGCAAGGACTTCGTGGCCAAC
GTCTCCCACGAGCTGCGCACGCCGCTGACGGTGATCGCCGGCTACCTGGAGACCCTCCTCGACAACGTCGAG
GATGTGAACCCGCGCTGGCTGCGCGCCCTGCAACAGATGCAGCAGCAGGCCGGACGCATGCAGAACCTGCTC
AACGACCTGCTCCTGCTGGCCAAGCTGGAGGCCACCGAATACCCCGGCGACAACAAGCCGGTGGCGGTGGAC
GCTCTCCTCGCCAGCATCCGCAACGACGCCCAGGCCCTGTCCGCCGGGCGCAACCACCGCATCAGCCTGGAC
GCCACACCCGCGGTGCAGCTCAAGGGCAGCGAGGCGGAACTGCGCAGCGCCTTCTCCAACCTGGTATTCAAC
GCGGTGAAGTACACCCCCGACGAGGGCGAGATCCGCATCCGCTGGTGGGCCGACGAACAGGGCGCGCACCTG
TCGGTGCAGGACACCGGTATCGGCGTCGATCCCAAGCACCTGCCGCGCCTGACCGAGCGCTTCTACCGGGTG
GACTCCAGCCGCGCCTCCAACACCGGCGGCACCGGCCTCGGCCTGGCCATCGTCAAGCACGTGCTGATCCGC
CACCGCGCGCGCCTGGAAATCAGCAGCGTGCCCGGCAAGGGCAGCACCTTCACCTGCCATTTCGCCCCGGCA
CAGGTCGCCGAGGCCGAGCGCAAGGCGTCGAAGTGA
Translation:
MQSVVNQDWRGALIRHLLLVLAASLVLGVVSGHYGWALALGLALYLGWTLWQLLRLHQWLRNHQPDEPPPDS
YGLWGEVFDNIYHLQRRNQRARGRLQAVIDRIQESTAALRDAVIMLDSDGNLEWWNLAAENLLGLKTPQDGG
QPVSNLIRHPRFKEYFDQEDYREPLEIPSPINERLRLQFHITLYGNREHLMLVRDVTRVHQLEQMRKDFVAN
VSHELRTPLTVIAGYLETLLDNVEDVNPRWLRALQQMQQQAGRMQNLLNDLLLLAKLEATEYPGDNKPVAVD
ALLASIRNDAQALSAGRNHRISLDATPAVQLKGSEAELRSAFSNLVFNAVKYTPDEGEIRIRWWADEQGAHL
SVQDTGIGVDPKHLPRLTERFYRVDSSRASNTGGTGLGLAIVKHVLIRHRARLEISSVPGKGSTFTCHFAPA
QVAEAERKASK*
AnnotationID:1121GeneID:1112
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 19:07:44
Gene Name:phoR
Confidence Code:2
GeneProduct:two-component sensor PhoR
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:Phosphate regulon sensor protein phoR
Functional Category Confidence Code:5
COGs:smart00387,pfam02518,cd00075
Secondary Functional Category(ies):
EC Number:2.7.3.-
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70886.1|AE016732_11 (AE016794) sensory box histidine kinase PhoR [Pseudomonas putida
           KT2440]
          Length = 435

 Score =  741 bits (1913), Expect = 0.0
 Identities = 357/431 (82%), Positives = 391/431 (90%)

>gb|AAO58897.1| (AE016875) phosphate regulon sensor protein phoR [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 440

 Score =  685 bits (1768), Expect = 0.0
 Identities = 332/432 (76%), Positives = 373/432 (86%)
Structural Features:
smart00387, HATPase_c, Histidine kinase-like ATPases; Histidine kinase-, 
DNA gyrase B-, phytochrome-like ATPases.
CD-Length = 112 residues,  96.4% aligned
Score =  111 bits (279), Expect = 2e-25
Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
CD-Length = 111 residues,  97.3% aligned
Score =  105 bits (264), Expect = 9e-24
Identities = 44/109 (40%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

cd00075, HATPase_c, Histidine kinase-like ATPases
CD-Length = 103 residues, 100.0% aligned
Score =  103 bits (258), Expect = 4e-23
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Genomic Context:
Comment:
ReferenceID:2227
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19369
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34737
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1112_cdd.html
URL:
ReferenceID:35675
Author/Investigator(s): Anba J, Bidaud M, Vasil ML, Lazdunski A.
Title: Nucleotide sequence of the Pseudomonas aeruginosa phoB gene, the regulatory gene for the phosphate regulon.
PubMed: 2115874
MedLine:
Source:
J Bacteriol. 1990 Aug;172(8):4685-9.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2115874
ReferenceID:35676
Author/Investigator(s): Watson GM, Scanlan DJ, Mann NH.
Title: Characterization of the genes encoding a phosphate-regulated two component sensory system in the marine cyanobacterium Synechococcus sp. WH7803.
PubMed: 8759795
MedLine:
Source:
FEMS Microbiol Lett. 1996 Aug 15;142(1):105-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8759795
Homologs By Global Alignment
Gene ID:1112

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1996 PA5361_tr translation of PA5361 443 99.32 99.54 0 2293.0
68067 gb|AAG08746.1|AE004948_2 (AE004948) two-component sensor PhoR [Pseudomonas aeruginosa PAO1] 443 99.32 99.54 0 2293.0
68068 gb|AAN70886.1|AE016732_11 (AE016794) sensory box histidine kinase PhoR [Pseudomonas putida KT2440] 443 80.58 88.48 8 1912.0
68069 gb|AAM75362.1|AF521648_2 (AF521648) PhoR [Pseudomonas syringae] 451 75.16 85.58 17 1823.0
68070 gb|AAO58897.1| (AE016875) phosphate regulon sensor protein phoR [Pseudomonas syringae pv. tomato str. DC3000] 444 75.00 84.23 5 1764.0
GC ORFID: 44114How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5361Glimmer Score:
Start: 5564149Stop: 5565480
Length: 1332
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5361 translation of PA5361Homolog Bit Score 887.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene2898 (ORF: BLASTX 693.0), t_PA5361 (ORF: GLIMMER)
GC ORF Sequence
ATGCAATCCGTCGTGAACCAAGACTGGCGTGGAGCGCTGATCCGCCACCTGCTTCTCGTGCTGGCCGCCAGC
CTCGTGCTCGGCGTGGTCAGCGGCCATTACGGCTGGGCCCTGGCCCTCGGCCTGGCTCTCTACCTCGGCTGG
ACCCTCTGGCAGCTACTGCGCCTGCACCAGTGGCTGCGCAACCACCAGCCAGACGAGCCACCGCCGGACAGC
TACGGCCTCTGGGGCGAAGTCTTCGACAATATCTACCACCTGCAACGCCGCAACCAGCGCGCCCGTGGCCGC
CTGCAGGCGGTGATCGACCGGATCCAGGAGTCCACCGCGGCCCTGCGTGACGCGGTGATCATGCTCGACAGC
GACGGCAACCTGGAATGGTGGAACCTCGCCGCGGAAAACCTGCTCGGCCTGAAGACCCCGCAGGACGGTGGC
CAGCCGGTGAGCAACCTGATCCGCCATCCGCGCTTCAAGGAATACTTCGACCAGGAGGATTACCGCGAGCCG
CTGGAAATCCCCTCGCCGATCAACGAGCGCCTGCGCCTGCAATTCCACATCACCCTCTACGGCAACCGCGAG
CACCTGATGCTGGTCCGCGACGTCACCCGCGTCCACCAGCTGGAGCAGATGCGCAAGGACTTCGTGGCCAAC
GTCTCCCACGAGCTGCGCACGCCGCTGACGGTGATCGCCGGCTACCTGGAGACCCTCCTCGACAACGTCGAG
GATGTGAACCCGCGCTGGCTGCGCGCCCTGCAACAGATGCAGCAGCAGGCCGGACGCATGCAGAACCTGCTC
AACGACCTGCTCCTGCTGGCCAAGCTGGAGGCCACCGAATACCCCGGCGACAACAAGCCGGTGGCGGTGGAC
GCTCTCCTCGCCAGCATCCGCAACGACGCCCAGGCCCTGTCCGCCGGGCGCAACCACCGCATCAGCCTGGAC
GCCACACCCGCGGTGCAGCTCAAGGGCAGCGAGGCGGAACTGCGCAGCGCCTTCTCCAACCTGGTATTCAAC
GCGGTGAAGTACACCCCCGACGAGGGCGAGATCCGCATCCGCTGGTGGGCCGACGAACAGGGCGCGCACCTG
TCGGTGCAGGACACCGGTATCGGCGTCGATCCCAAGCACCTGCCGCGCCTGACCGAGCGCTTCTACCGGGTG
GACTCCAGCCGCGCCTCCAACACCGGCGGCACCGGCCTCGGCCTGGCCATCGTCAAGCACGTGCTGATCCGC
CACCGCGCGCGCCTGGAAATCAGCAGCGTGCCCGGCAAGGGCAGCACCTTCACCTGCCATTTCGCCCCGGCA
CAGGTCGCCGAGGCCGAGCGCAAGGCGTCGAAGTGA