ViewGene

Locus Name:
GeneID:
Location:

GeneID:1111
TrivialName: PA14_20650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20650
PAO1 Ortholog Locus:PA3357
Sequence Length:1347
Protein Length:448
Start: 1779051
Stop: 1777705
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06745.1|AE004758_2 (AE004758) D-serine dehydratase [Pseudomonas aeruginosa PAO1]
Identities = 444/448 (99%), Positives = 446/448 (99%)
Sequence:
TTGATTCTCGGAACACCCAAGGCCGACTGGCTCGCCGAATTCCCGCGCCTGGCCGACCTGATCGCCCTGCGC
CCGAGCGAGTGGTTCAACCCGGCCATCGCGCCGAGCGCCGAAGCcctggccgacgTCggcctcgGCGCCGCC
GACGTGGCCGACGCCAGCGCCCGCCTGCAGCGCTTCGCCCCGCTGATCGCCCGGCTGTTTCCGgAAACCGCC
GCCAGCGGCGGCATCATCGAGTCCGACCTGGTCGAGGTCGCCGCCTTCCACGATGCCCTGCGCCAGCATTAC
GCCGCCGAACTGCCCGGCCGGCTCTGGCTGAAACGCGATAGCCACCTGCCGATCTCCGGCTCGATCAAGGCC
CGCGGCGGCATCTATGAAGTGCTCGCCCATGCCGAGCGCCTGGCCCTGGAGCACGGCCTGATCGGCCTCGAC
GACGACTACTCGCGGCTGGCCGAGGCGGATTGCCGGGCATTCTTCGCCCGCCACCGGATAGCCGTGGGCTCC
ACCGGCAACCTGGGCCTTTCCATCGGCATCATCGGCGCCGCGCTGGGCTTCCAGGCCAGCGTGCACATGTCC
GCCGACGCCCGCCAGTGGAAGAAGGACAAGCTGCGCGCCCACGGCGTGACGGTGGTGGAGTACGCCTCCGAC
TACAGTGTCGCGGTGGAACAGGGCCGCCGCGAAGCGGCCGGCGATCCCTACACCCATTTCGTCGACGACGAA
AACTCCCGCGACCTGTTCCTCGGCTACGCCGTCGCCGCCGAGCGACTGCGCGGCCAGCTGGACGCCGCCGGC
ATCCGCGTCGACAGCGAGCACCCGCTGTTCGTCCACCTGCCCTGCGGGGTCGGCGGCGGTCCCGGCGGCGTG
GCCTTCGGCCTCAAGCTGGCGTTCGGCGACGCGGTGCACTGCCTGTTCGCCGAGCCGACCCACTCGCCCTGC
ATGTTCCTCGGCGTCTATACCGGCCGCCACGAGCAGGTTTCGGTGCAGGACTTCGGCATCGACAACCGCACC
GCCGCCGATGGCCTGGCGGTGGGGCGTCCGTCGGGCTTCGTCGGCCGCGCCATGCAGCGCCTGCTCGACGGC
TACTACACGGTGGACGACGACGAACTGTTCCGCCTGCTCGCCTTGCTCGAGCGCAGCCAGGGCATCCGCCTG
GAACCCTCGGCCCTGGCCGGCGCGCCGGGCATCGCCCGGGTCACCCGTGAGCCGCAGGGCTATCGCGAACGC
ATGGGGCTGACCTCGGCGCGCCTGGCCAATGCCACCCACCTGGTCTGGGCCACCGGCGGCGGCATGGTGCCC
GAGACGGAAATGCGCGCCTACCTGAAGCGAGGCCGCTCGCTGCTGGACTGA
Translation:
MILGTPKADWLAEFPRLADLIALRPSEWFNPAIAPSAEALADVGLGAADVADASARLQRFAPLIARLFPETA
ASGGIIESDLVEVAAFHDALRQHYAAELPGRLWLKRDSHLPISGSIKARGGIYEVLAHAERLALEHGLIGLD
DDYSRLAEADCRAFFARHRIAVGSTGNLGLSIGIIGAALGFQASVHMSADARQWKKDKLRAHGVTVVEYASD
YSVAVEQGRREAAGDPYTHFVDDENSRDLFLGYAVAAERLRGQLDAAGIRVDSEHPLFVHLPCGVGGGPGGV
AFGLKLAFGDAVHCLFAEPTHSPCMFLGVYTGRHEQVSVQDFGIDNRTAADGLAVGRPSGFVGRAMQRLLDG
YYTVDDDELFRLLALLERSQGIRLEPSALAGAPGIARVTREPQGYRERMGLTSARLANATHLVWATGGGMVP
ETEMRAYLKRGRSLLD*
AnnotationID:1120GeneID:1111
AnnotatorUID: diggins
Modification Date/Time: 2005-04-17 17:05:35
Gene Name:dsdA
Confidence Code:2
GeneProduct:D-serine dehydratase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:D-serine dehydratase (deaminase)
Functional Category Confidence Code:5
COGs:COG3048
Secondary Functional Category(ies):
EC Number:4.2.1.14
Status:ACTIVE
Pathway:
Homology:
>gb|AAN81351.1|AE016764_33 (AE016764) D-serine dehydratase [Escherichia coli CFT073]
          Length = 442

 Score =  563 bits (1450), Expect = e-159
 Identities = 279/434 (64%), Positives = 336/434 (77%), Gaps = 1/434 (0%)

>gb|AAP17754.1| (AE016986) D-serine dehydratase (deaminase) [Shigella flexneri 2a
           str. 2457T]
          Length = 442

 Score =  558 bits (1437), Expect = e-158
 Identities = 278/434 (64%), Positives = 335/434 (77%), Gaps = 1/434 (0%)

>gb|AAO71209.1| (AE016846) D-serine dehydratase [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 440

 Score =  553 bits (1424), Expect = e-156
 Identities = 275/434 (63%), Positives = 326/434 (75%), Gaps = 1/434 (0%)
Structural Features:
COG3048, DsdA, D-serine dehydratase 
[Amino acid transport and metabolism]
CD-Length = 443 residues, 100.0% aligned
Score =  761 bits (1965), Expect = 0.0
Identities = 308/443 (69%), Positives = 348/443 (78%)

Genomic Context:
Comment:
ReferenceID:14281
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19367
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32197
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1111_cdd.html
URL:
ReferenceID:33995
Author/Investigator(s): Norregaard-Madsen M, McFall E, Valentin-Hansen P.
Title: Organization and transcriptional regulation of the Escherichia coli K-12 D-serine tolerance locus.
PubMed: 7592420
MedLine:
Source:
J Bacteriol. 1995 Nov;177(22):6456-61.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7592420
Homologs By Global Alignment
Gene ID:1111

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1995 PA3357_tr translation of PA3357 448 99.10 99.55 0 2291.0
68041 gb|AAG06745.1|AE004758_2 (AE004758) D-serine dehydratase [Pseudomonas aeruginosa PAO1] 448 98.88 99.55 0 2289.0
68042 gb|AAQ60318.1| (AE016919) D-serine dehydratase [Chromobacterium violaceum ATCC 12472] 448 75.22 83.92 0 1739.0
68049 gb|AAA87975.1| (J01603) D-serine deaminase [Escherichia coli] 449 62.58 75.05 8 1443.0
68048 dbj|BAA16229.1| (D90866) D-serine dehydratase (EC 4.2.1.14) [Escherichia coli] 449 62.58 75.27 8 1444.0
GC ORFID: 44113How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3357Glimmer Score:
Start: 3174881Stop: 3176227
Length: 1347
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3357 translation of PA3357Homolog Bit Score 887.0
Other Homologs: t_PA3357 (ORF: GLIMMER)
GC ORF Sequence
TTGATTCTCGGAACACCCAAGGCCGACTGGCTCGCCGAATTCCCGCGCCTGGCCGACCTGATCGCCCTGCGC
CCGAGCGAGTGGTTCAACCCGGCCATCGCGCCGAGCGCCGAAGCcctggccgacgTCggcctcgGCGCCGCC
GACGTGGCCGACGCCAGCGCCCGCCTGCAGCGCTTCGCCCCGCTGATCGCCCGGCTGTTTCCGgAAACCGCC
GCCAGCGGCGGCATCATCGAGTCCGACCTGGTCGAGGTCGCCGCCTTCCACGATGCCCTGCGCCAGCATTAC
GCCGCCGAACTGCCCGGCCGGCTCTGGCTGAAACGCGATAGCCACCTGCCGATCTCCGGCTCGATCAAGGCC
CGCGGCGGCATCTATGAAGTGCTCGCCCATGCCGAGCGCCTGGCCCTGGAGCACGGCCTGATCGGCCTCGAC
GACGACTACTCGCGGCTGGCCGAGGCGGATTGCCGGGCATTCTTCGCCCGCCACCGGATAGCCGTGGGCTCC
ACCGGCAACCTGGGCCTTTCCATCGGCATCATCGGCGCCGCGCTGGGCTTCCAGGCCAGCGTGCACATGTCC
GCCGACGCCCGCCAGTGGAAGAAGGACAAGCTGCGCGCCCACGGCGTGACGGTGGTGGAGTACGCCTCCGAC
TACAGTGTCGCGGTGGAACAGGGCCGCCGCGAAGCGGCCGGCGATCCCTACACCCATTTCGTCGACGACGAA
AACTCCCGCGACCTGTTCCTCGGCTACGCCGTCGCCGCCGAGCGACTGCGCGGCCAGCTGGACGCCGCCGGC
ATCCGCGTCGACAGCGAGCACCCGCTGTTCGTCCACCTGCCCTGCGGGGTCGGCGGCGGTCCCGGCGGCGTG
GCCTTCGGCCTCAAGCTGGCGTTCGGCGACGCGGTGCACTGCCTGTTCGCCGAGCCGACCCACTCGCCCTGC
ATGTTCCTCGGCGTCTATACCGGCCGCCACGAGCAGGTTTCGGTGCAGGACTTCGGCATCGACAACCGCACC
GCCGCCGATGGCCTGGCGGTGGGGCGTCCGTCGGGCTTCGTCGGCCGCGCCATGCAGCGCCTGCTCGACGGC
TACTACACGGTGGACGACGACGAACTGTTCCGCCTGCTCGCCTTGCTCGAGCGCAGCCAGGGCATCCGCCTG
GAACCCTCGGCCCTGGCCGGCGCGCCGGGCATCGCCCGGGTCACCCGTGAGCCGCAGGGCTATCGCGAACGC
ATGGGGCTGACCTCGGCGCGCCTGGCCAATGCCACCCACCTGGTCTGGGCCACCGGCGGCGGCATGGTGCCC
GAGACGGAAATGCGCGCCTACCTGAAGCGAGGCCGCTCGCTGCTGGACTGA