ViewGene

Locus Name:
GeneID:
Location:

GeneID:111
TrivialName: PA14_19340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19340
PAO1 Ortholog Locus:PA3462
Sequence Length:2757
Protein Length:918
Start: 1670152
Stop: 1667396
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06850.1|AE004767_1 (AE004767) probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
Identities = 913/919 (99%), Positives = 916/919 (99%), Gaps = 1/919 (0%)
Sequence:
ATGTCCCGACTCTGCCTGGTCCTGCTGTTGCTCTGCTGCGCGCTGCCGGCCCGGGCGCAGCCGCCCGCACCG
CTGGACGGAGAGGACCTGCGCCTATCCCTGGGCGCATACGCCGAGTACTACCGCGACGCCGGCGGCAAGGCG
CGCCTGGGCGACATCCTCGCCTTGCCGGCCCAGGCCTTCGCCGCCCTGCGCGGCGACCACGCGAACTTCGGC
AAGAACGCCGCGGCCTGGTGGTTCAGGGTGCGCCTGGACAACCGCAACGGCGCCGACCTGGCCGGTTTCCTG
GAGGTCAACTACCCGCTGCTGGACGACCTCAAGGTCTACCTGCTGACCGCCGATGGGCGCATCGAACAGCAG
GAGAGCGGCGACCTGTTCGCCTTCTCCCAGCGCCCGGTGCAGGTGCGCAACTTCTGGTTCCCGCTGCGACTG
CCGCCCGGCGAGAGCACCCTGCTGCTGCGCGTGCAGAGCAGCAGCACCGTCTACGTGCCGCTGTACTTCAGC
ACCTACGCGGCCAGCGCGGCCAGCCAGGAAACCCTGATGGGCTTCAACGGGGCCTTCTACGGGGTGCTGTTC
GGGTTGTTCTGCTACAACCTGTTCCTCTTCGTCTCGCTGCGCGAGGCCACCTACGCCTGGTACCTGCTGTAC
AACCTCAGCCTCGGCCTGTTTTCCGCCAGCTTCGACGGCCTGCTGTTCAAGCTGCTGCCCGGACACGTGGCG
CTGGAGTCGGCCGGCATCTACCTGCTGATGTACCTGAGCTGCCTGGTGTCGATCCAGTTCAGCCGCGGCTAC
CTCTACACCCGCCGCGACTTCCCGCGCCTCGACCGCTTCCTCCGCGGCCTGCTGCTGGCCTGCGTGGTCCTG
TTGGCCAGCGAGCCGCTGGTGGGGCTGCGCGCCTGGAACGTCCTCGCCAGCCTGACGGTGATGCTGGTATCC
CTCAGCCTGCTGCTGGCCGGCGTCCACGTCTGGCGCCAGGGCCTGCGCTACGGCCTCTACTACATCCTGGCC
TGGGGCGCGCTGCTGCTGTCGTTCCTGGTCACCACCGCCGCCTCGCTGGGCTTCGAACTGTTCGGCCTGTTC
GGCAGCAGCGTGGTCAAGATCGGCATGACCGTGGAACTGGTGACCCTGTCCATCGGCCTCGCCGACCGCATC
AATGCGCTCAAGGAGGAAGGCTTCCGCTCGCGCCAGGCGGCCGAGCAGGCGCGGGTGGAGAACGAGGCGAAG
AGCCGCTTCCTGGCGAAGATGAGCCATGAGATCCGCACCCCGCTGAACGGCGTGCTGGGCATGCTGCAACTG
CTCCGCGATACCCCGCTGGACCGCGGCCAGGCGGCCTACGTGGAGACCATCGCCAGCTCCGGCAGCGCGCTG
ATGTCGGTGATCAACGATATCCTCGACTACGCTCGCATCGAGTCCGGCAAGCTGCACCTGGAGCGCATCGAC
TTCGACCTGGAGGAACTGCTCTCCGACACCCTGGCGCTGTTCAGCGCCCAGGCCGTGGAAAAACGCCTGCGC
CTGCACCTCGGCCTGGACAGGGGCGTGCCGCGCCGCCTCAACGGCGACCCGACGCGGTTGCGCCAGGTACTG
ATGAACCTGCTCAGCAACGCCCTCAAGTTCACCGCCGAAGGCCATGTCGCCGTGCGCGTGCAGCGGCGCTTC
GACGAGGGCGGACGCGAGCGCCTGCTGTACAGCGTCAGCGACAGCGGCATCGGGATATCCGCCCAGGCGCAG
AAGACCCTGTTCGAATCCTTCTCCCAGGCCGACTCCAGCACCACCCGCCGCTACGGCGGCAGCGGCCTGGGC
CTGGCGATCAGCCGCGAGCTGGTGCAGATGATGGGCGGGCGCATCGAGGTGAGCAGCGAGCCGGGCAAGGGC
ACCCGGTTCAGCGTCGACCTGCCGCTCAGCCCCGCCCTCGAGGCCGGCGAAGCGGACGAACTGGCGCAACTG
CTGCAACACCGCCCGGCCCTGCTGGCCAGCGAGGACAACCTGACCCTGGACTGCCTGCAGGCATTGCTGGAG
CGTTGGGGGCTGCGGGTCGAACGCTGCCTGCAGCCGAGACGGCTGAACGCCTACCTGGAGGACTTCAGCGCA
CCGCCCCTGCTGGTCCTGGCGGCGCCCTGGCCGGGGCCGCCGTCGATCTGGCTGGACACCCTCTATGCGCAA
CTGGAGCAAGGCCAGCGCATCCTCCTGCTATGCCCGCCGCAGCACTGCCAGGACCTGCCGCCGCACGAAGGC
CTGCGCCTGCTGGCCCTGGCCCAGCCGGTGGCGGTGAAGGCCCTGCGCGAAGCCCTGCTGGAACTGTACCGG
GAGCGGCGCCGACAGCCAGGGCGGAGCAGCGAGGCGGCCCCGGACGAACGCCTGGACGCCCCATGCATCCTG
GTCGCCGAGGACAACCCGGTGAACCAGCTGGTGGTGCGCGGCTTCCTCGCCAAGCGCGGCTACGCGGTGCGC
CTGGCCGGCAACGGGCGGCTCGCGCTGGACGAGTACCTGCGCGACCCGAACGGCATCCAGTTGATCCTGATG
GATGGCGAGATGCCGGAAATGGACGGCTTCGAGGCGACCCGCCTGATCCGCCGGGAGGAGCGTGCCCAGGGC
TGGCCGCGCGTCCCGATCGTCGCCCTGACCGCGCACATCCTCGACGAACACCGCCGGGCCGGAATCGAGGCC
GGCATGGACGCCTACCTCGGCAAGCCGGTGGACCGGGCGGAACTCTATGCCACCCTCGAACGCCTACTCGGC
CAGCCTTCGCGACAGGCATGA
Translation:
MSRLCLVLLLLCCALPARAQPPAPLDGEDLRLSLGAYAEYYRDAGGKARLGDILALPAQAFAALRGDHANFG
KNAAAWWFRVRLDNRNGADLAGFLEVNYPLLDDLKVYLLTADGRIEQQESGDLFAFSQRPVQVRNFWFPLRL
PPGESTLLLRVQSSSTVYVPLYFSTYAASAASQETLMGFNGAFYGVLFGLFCYNLFLFVSLREATYAWYLLY
NLSLGLFSASFDGLLFKLLPGHVALESAGIYLLMYLSCLVSIQFSRGYLYTRRDFPRLDRFLRGLLLACVVL
LASEPLVGLRAWNVLASLTVMLVSLSLLLAGVHVWRQGLRYGLYYILAWGALLLSFLVTTAASLGFELFGLF
GSSVVKIGMTVELVTLSIGLADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQL
LRDTPLDRGQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLR
LHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGISAQAQ
KTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLPLSPALEAGEADELAQL
LQHRPALLASEDNLTLDCLQALLERWGLRVERCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQ
LEQGQRILLLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCIL
VAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILMDGEMPEMDGFEATRLIRREERAQG
WPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAELYATLERLLGQPSRQA*
AnnotationID:121GeneID:111
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 21:09:28
Gene Name:
Confidence Code:3
GeneProduct:putative sensor/response regulator hybrid
Cell Localization:()
Synonyms:PA3462
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative sensory box histidine kinase/response regulator
Functional Category Confidence Code:5
COGs:cd00075,cd00156,smart00387,COG0642
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58225.1| (AE016873) sensor histidine kinase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 668

 Score =  321 bits (823), Expect = 1e-86
 Identities = 221/646 (34%), Positives = 334/646 (51%), Gaps = 16/646 (2%)

>gb|AAN70393.1|AE016681_2 (AE016792) sensor histidine kinase/response regulator [Pseudomonas
           putida KT2440]
          Length = 923

 Score =  321 bits (822), Expect = 2e-86
 Identities = 298/941 (31%), Positives = 447/941 (47%), Gaps = 85/941 (9%)

>dbj|BAC45924.1| (AP005937) two-component hybrid sensor and regulator
           [Bradyrhizobium japonicum USDA 110]
          Length = 743

 Score =  311 bits (797), Expect = 1e-83
 Identities = 217/552 (39%), Positives = 302/552 (54%), Gaps = 25/552 (4%)

Structural Features:
cd00075, HATPase_c, Histidine kinase-like ATPases
CD-Length = 103 residues, 100.0% aligned
Score =  110 bits (276), Expect = 8e-25
Identities = 51/108 (47%), Positives = 70/108 (64%), Gaps = 5/108 (4%)

cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  105 bits (264), Expect = 2e-23
Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 7/120 (5%)

smart00387, HATPase_c, Histidine kinase-like ATPases; Histidine kinase-, 
DNA gyrase B-, phytochrome-like ATPases.
CD-Length = 112 residues, 100.0% aligned
Score =  120 bits (302), Expect = 7e-28
Identities = 52/118 (44%), Positives = 76/118 (64%), Gaps = 7/118 (5%)

COG0642, BaeS, Signal transduction histidine
CD-Length = 336 residues,  98.2% aligned
Score =  175 bits (442), Expect = 3e-44
Identities = 115/342 (33%), Positives = 176/342 (51%), Gaps = 17/342 (4%)
Genomic Context:
Comment:
ReferenceID:225
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17367
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32098
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:111_cdd.html
URL:
Homologs By Global Alignment
Gene ID:111

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
209 PA3462_tr translation of PA3462 919 99.34 99.67 1 4630.0
15482 gb|AAG06850.1|AE004767_1 (AE004767) probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] 919 99.34 99.67 1 4630.0
15543 gb|AAK24933.1| (AE005960) sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] 971 25.74 36.14 311 603.0
15530 gb|AAK25037.1| (AE005970) sensor histidine kinase/response regulator [Caulobacter crescentus CB15] 1066 25.70 36.67 364 648.0
15501 dbj|BAC88659.1| (AP006570) two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] 1082 25.60 35.48 390 676.0
GC ORFID: 43113How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3462Glimmer Score:
Start: 3283780Stop: 3286536
Length: 2757
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3462 translation of PA3462Homolog Bit Score 1787.0
Other Homologs: t_PA3462 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCCGACTCTGCCTGGTCCTGCTGTTGCTCTGCTGCGCGCTGCCGGCCCGGGCGCAGCCGCCCGCACCG
CTGGACGGAGAGGACCTGCGCCTATCCCTGGGCGCATACGCCGAGTACTACCGCGACGCCGGCGGCAAGGCG
CGCCTGGGCGACATCCTCGCCTTGCCGGCCCAGGCCTTCGCCGCCCTGCGCGGCGACCACGCGAACTTCGGC
AAGAACGCCGCGGCCTGGTGGTTCAGGGTGCGCCTGGACAACCGCAACGGCGCCGACCTGGCCGGTTTCCTG
GAGGTCAACTACCCGCTGCTGGACGACCTCAAGGTCTACCTGCTGACCGCCGATGGGCGCATCGAACAGCAG
GAGAGCGGCGACCTGTTCGCCTTCTCCCAGCGCCCGGTGCAGGTGCGCAACTTCTGGTTCCCGCTGCGACTG
CCGCCCGGCGAGAGCACCCTGCTGCTGCGCGTGCAGAGCAGCAGCACCGTCTACGTGCCGCTGTACTTCAGC
ACCTACGCGGCCAGCGCGGCCAGCCAGGAAACCCTGATGGGCTTCAACGGGGCCTTCTACGGGGTGCTGTTC
GGGTTGTTCTGCTACAACCTGTTCCTCTTCGTCTCGCTGCGCGAGGCCACCTACGCCTGGTACCTGCTGTAC
AACCTCAGCCTCGGCCTGTTTTCCGCCAGCTTCGACGGCCTGCTGTTCAAGCTGCTGCCCGGACACGTGGCG
CTGGAGTCGGCCGGCATCTACCTGCTGATGTACCTGAGCTGCCTGGTGTCGATCCAGTTCAGCCGCGGCTAC
CTCTACACCCGCCGCGACTTCCCGCGCCTCGACCGCTTCCTCCGCGGCCTGCTGCTGGCCTGCGTGGTCCTG
TTGGCCAGCGAGCCGCTGGTGGGGCTGCGCGCCTGGAACGTCCTCGCCAGCCTGACGGTGATGCTGGTATCC
CTCAGCCTGCTGCTGGCCGGCGTCCACGTCTGGCGCCAGGGCCTGCGCTACGGCCTCTACTACATCCTGGCC
TGGGGCGCGCTGCTGCTGTCGTTCCTGGTCACCACCGCCGCCTCGCTGGGCTTCGAACTGTTCGGCCTGTTC
GGCAGCAGCGTGGTCAAGATCGGCATGACCGTGGAACTGGTGACCCTGTCCATCGGCCTCGCCGACCGCATC
AATGCGCTCAAGGAGGAAGGCTTCCGCTCGCGCCAGGCGGCCGAGCAGGCGCGGGTGGAGAACGAGGCGAAG
AGCCGCTTCCTGGCGAAGATGAGCCATGAGATCCGCACCCCGCTGAACGGCGTGCTGGGCATGCTGCAACTG
CTCCGCGATACCCCGCTGGACCGCGGCCAGGCGGCCTACGTGGAGACCATCGCCAGCTCCGGCAGCGCGCTG
ATGTCGGTGATCAACGATATCCTCGACTACGCTCGCATCGAGTCCGGCAAGCTGCACCTGGAGCGCATCGAC
TTCGACCTGGAGGAACTGCTCTCCGACACCCTGGCGCTGTTCAGCGCCCAGGCCGTGGAAAAACGCCTGCGC
CTGCACCTCGGCCTGGACAGGGGCGTGCCGCGCCGCCTCAACGGCGACCCGACGCGGTTGCGCCAGGTACTG
ATGAACCTGCTCAGCAACGCCCTCAAGTTCACCGCCGAAGGCCATGTCGCCGTGCGCGTGCAGCGGCGCTTC
GACGAGGGCGGACGCGAGCGCCTGCTGTACAGCGTCAGCGACAGCGGCATCGGGATATCCGCCCAGGCGCAG
AAGACCCTGTTCGAATCCTTCTCCCAGGCCGACTCCAGCACCACCCGCCGCTACGGCGGCAGCGGCCTGGGC
CTGGCGATCAGCCGCGAGCTGGTGCAGATGATGGGCGGGCGCATCGAGGTGAGCAGCGAGCCGGGCAAGGGC
ACCCGGTTCAGCGTCGACCTGCCGCTCAGCCCCGCCCTCGAGGCCGGCGAAGCGGACGAACTGGCGCAACTG
CTGCAACACCGCCCGGCCCTGCTGGCCAGCGAGGACAACCTGACCCTGGACTGCCTGCAGGCATTGCTGGAG
CGTTGGGGGCTGCGGGTCGAACGCTGCCTGCAGCCGAGACGGCTGAACGCCTACCTGGAGGACTTCAGCGCA
CCGCCCCTGCTGGTCCTGGCGGCGCCCTGGCCGGGGCCGCCGTCGATCTGGCTGGACACCCTCTATGCGCAA
CTGGAGCAAGGCCAGCGCATCCTCCTGCTATGCCCGCCGCAGCACTGCCAGGACCTGCCGCCGCACGAAGGC
CTGCGCCTGCTGGCCCTGGCCCAGCCGGTGGCGGTGAAGGCCCTGCGCGAAGCCCTGCTGGAACTGTACCGG
GAGCGGCGCCGACAGCCAGGGCGGAGCAGCGAGGCGGCCCCGGACGAACGCCTGGACGCCCCATGCATCCTG
GTCGCCGAGGACAACCCGGTGAACCAGCTGGTGGTGCGCGGCTTCCTCGCCAAGCGCGGCTACGCGGTGCGC
CTGGCCGGCAACGGGCGGCTCGCGCTGGACGAGTACCTGCGCGACCCGAACGGCATCCAGTTGATCCTGATG
GATGGCGAGATGCCGGAAATGGACGGCTTCGAGGCGACCCGCCTGATCCGCCGGGAGGAGCGTGCCCAGGGC
TGGCCGCGCGTCCCGATCGTCGCCCTGACCGCGCACATCCTCGACGAACACCGCCGGGCCGGAATCGAGGCC
GGCATGGACGCCTACCTCGGCAAGCCGGTGGACCGGGCGGAACTCTATGCCACCCTCGAACGCCTACTCGGC
CAGCCTTCGCGACAGGCATGA