ViewGene

Locus Name:
GeneID:
Location:

GeneID:1109
TrivialName: PA14_43810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43810
PAO1 Ortholog Locus:PA1600
Sequence Length:1302
Protein Length:433
Start: 3900268
Stop: 3901569
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04989.1|AE004588_2 (AE004588) probable cytochrome c [Pseudomonas aeruginosa PAO1]
Identities = 429/433 (99%), Positives = 430/433 (99%)
Sequence:
ATGAAGAAGGCAACACGCATCGGCCTCTGGGCCTCCGGCAGCCTCGTCGCGCTCGCCGCCATCGCCCTCGGC
TACGCCTGGCAACCGGCCATCGCGCCACTGGAAGGCACACCCGGTCCCTTCAGCGCCGAGCAGATCGCCCGC
GGCGAACGCCTCGCCGCCCTCGGCGACTGCGCGGTCTGCCACACTCGCGAAGGCGGCCCGCGCAACGCCGGC
GGACGGGCCTTGCCGACGCCGTTCGGGACGATCTACAGCAGCAACCTCACGCCGGATCGCGCGAGCGGCATC
GGTGGCTGGTCCTACCCCGCCTTCGAGCGGGCCATGCGGCATGGCGTAGCCCGCGACGGCAGCTATCTGTAT
CCGGCGTTCCCTTACACCGCCTTCACCAGGACTCGCGGCGAAGACCTGAAGGCCCTGTACGCCTACCTGATG
AGCCAGCCGGCGGTGCACAGCGAAACGCCTGCCAACCAGTTGCCGTTCCCCTTCGACCAACGCCAGCTGATG
GCCGGCTGGAACCTGCTGTTCCTGGAGCCCGGCGCCTACCGCGACGAGCCGACGCGCAACCAGCAATGGAAC
CGCGGCGCCTATCTCGCCGAAGGCCTCGGCCATTGCAGCGCCTGCCACTCGCCGCGCAATGCGCTCGGCGCG
GAAAAGTCCGGTAGCGCGCACTTCGCCGGCGGCGAGGCGGAGGGCTGGACCGCGCCAGCCTTGAACGCCAGT
TCGCCGGCGCCCATCGCCTGGAGCGAGGAGGCCCTCTACGCCTACCTCCGCCACGGCTATTCGGCCTACCAC
GGGGTCGCCAGCGGGCCGATGGCGCCAGTGGTCGGCGAAGGCCTGGCCAAGCAGTCGGACGAGGACCTGCGG
GCCCTGGCCCATTACCTTGCGTCCTACGCCGCTGCCCCGGCCGGGGAAACCGATCAGCAACAGGCGCAACGC
CTCGACCGGCAGGGCTACGGCCGCGTGCAACCGCCCAGCGGCAGCGGCGCGCGCCTGTTCGCCGGGGCCTGC
CTGGCCTGCCACCATGACGGCGACGGACCGCGCTTCTTCGGCGTGCGTCCATCCCTGGCGCTGAACAGCAAT
GTGCATGCGGACAGCCCGGACAACCTGCTGCGGATCATCCTCGACGGCATCCACAGCCCGGCCACCGGCGAC
CTCGGCTATATGCCCGGCTTCCGCCATAGCCTCGACGACCGGCAAGTCGCCGCCCTGGCCAACTACCTGCGC
GAGCGTTTCGCCGGCAAGCCCGCCTGGCCGGACCTCGCGGCCAAGGCGGCAAGCCTGCGCCGACAGGCGGCG
CCCTGA
Translation:
MKKATRIGLWASGSLVALAAIALGYAWQPAIAPLEGTPGPFSAEQIARGERLAALGDCAVCHTREGGPRNAG
GRALPTPFGTIYSSNLTPDRASGIGGWSYPAFERAMRHGVARDGSYLYPAFPYTAFTRTRGEDLKALYAYLM
SQPAVHSETPANQLPFPFDQRQLMAGWNLLFLEPGAYRDEPTRNQQWNRGAYLAEGLGHCSACHSPRNALGA
EKSGSAHFAGGEAEGWTAPALNASSPAPIAWSEEALYAYLRHGYSAYHGVASGPMAPVVGEGLAKQSDEDLR
ALAHYLASYAAAPAGETDQQQAQRLDRQGYGRVQPPSGSGARLFAGACLACHHDGDGPRFFGVRPSLALNSN
VHADSPDNLLRIILDGIHSPATGDLGYMPGFRHSLDDRQVAALANYLRERFAGKPAWPDLAAKAASLRRQAA
P*
AnnotationID:1118GeneID:1109
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 15:03:41
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c
Cell Localization:()
Synonyms:PA1600
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69542.1|AE016587_8 (AE016788) aldehyde dehydrogenase family protein, putative/cytochrome
            c family protein, putative [Pseudomonas putida KT2440]
          Length = 1187

 Score =  480 bits (1235), Expect = e-135
 Identities = 244/434 (56%), Positives = 298/434 (68%), Gaps = 19/434 (4%)

>emb|CAE32273.1| (BX640442) putative cytochrome [Bordetella bronchiseptica]
          Length = 946

 Score =  466 bits (1198), Expect = e-130
 Identities = 240/428 (56%), Positives = 294/428 (68%), Gaps = 11/428 (2%)

>emb|CAC48788.1| (AL603643) putative alcohol dehydrogenase cytochrome c subunit
           precursor protein [Sinorhizobium meliloti]
          Length = 462

 Score =  388 bits (996), Expect = e-107
 Identities = 209/441 (47%), Positives = 278/441 (63%), Gaps = 21/441 (4%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:2221
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19363
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37306
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1109_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1109

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1993 PA1600_tr translation of PA1600 433 99.07 99.30 0 2293.0
68015 gb|AAG04989.1|AE004588_2 (AE004588) probable cytochrome c [Pseudomonas aeruginosa PAO1] 433 99.07 99.30 0 2293.0
68019 emb|CAC48788.1| (AL603643) putative alcohol dehydrogenase cytochrome c subunit precursor protein [Sinorhizobium meliloti] 469 44.98 59.91 43 1014.0
68020 dbj|BAB97170.1| (AB086014) cytochrome c [Acetobacter pasteurianus] 447 44.51 57.94 19 953.0
68021 emb|CAA69953.1| (Y08696) cytochrome c [Gluconacetobacter europaeus] 462 41.77 56.06 47 879.0
GC ORFID: 44111How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1600Glimmer Score:
Start: 1053641Stop: 1052340
Length: 1302
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1600 translation of PA1600Homolog Bit Score 887.0
Other Homologs: t_PA1600 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGAAGGCAACACGCATCGGCCTCTGGGCCTCCGGCAGCCTCGTCGCGCTCGCCGCCATCGCCCTCGGC
TACGCCTGGCAACCGGCCATCGCGCCACTGGAAGGCACACCCGGTCCCTTCAGCGCCGAGCAGATCGCCCGC
GGCGAACGCCTCGCCGCCCTCGGCGACTGCGCGGTCTGCCACACTCGCGAAGGCGGCCCGCGCAACGCCGGC
GGACGGGCCTTGCCGACGCCGTTCGGGACGATCTACAGCAGCAACCTCACGCCGGATCGCGCGAGCGGCATC
GGTGGCTGGTCCTACCCCGCCTTCGAGCGGGCCATGCGGCATGGCGTAGCCCGCGACGGCAGCTATCTGTAT
CCGGCGTTCCCTTACACCGCCTTCACCAGGACTCGCGGCGAAGACCTGAAGGCCCTGTACGCCTACCTGATG
AGCCAGCCGGCGGTGCACAGCGAAACGCCTGCCAACCAGTTGCCGTTCCCCTTCGACCAACGCCAGCTGATG
GCCGGCTGGAACCTGCTGTTCCTGGAGCCCGGCGCCTACCGCGACGAGCCGACGCGCAACCAGCAATGGAAC
CGCGGCGCCTATCTCGCCGAAGGCCTCGGCCATTGCAGCGCCTGCCACTCGCCGCGCAATGCGCTCGGCGCG
GAAAAGTCCGGTAGCGCGCACTTCGCCGGCGGCGAGGCGGAGGGCTGGACCGCGCCAGCCTTGAACGCCAGT
TCGCCGGCGCCCATCGCCTGGAGCGAGGAGGCCCTCTACGCCTACCTCCGCCACGGCTATTCGGCCTACCAC
GGGGTCGCCAGCGGGCCGATGGCGCCAGTGGTCGGCGAAGGCCTGGCCAAGCAGTCGGACGAGGACCTGCGG
GCCCTGGCCCATTACCTTGCGTCCTACGCCGCTGCCCCGGCCGGGGAAACCGATCAGCAACAGGCGCAACGC
CTCGACCGGCAGGGCTACGGCCGCGTGCAACCGCCCAGCGGCAGCGGCGCGCGCCTGTTCGCCGGGGCCTGC
CTGGCCTGCCACCATGACGGCGACGGACCGCGCTTCTTCGGCGTGCGTCCATCCCTGGCGCTGAACAGCAAT
GTGCATGCGGACAGCCCGGACAACCTGCTGCGGATCATCCTCGACGGCATCCACAGCCCGGCCACCGGCGAC
CTCGGCTATATGCCCGGCTTCCGCCATAGCCTCGACGACCGGCAAGTCGCCGCCCTGGCCAACTACCTGCGC
GAGCGTTTCGCCGGCAAGCCCGCCTGGCCGGACCTCGCGGCCAAGGCGGCAAGCCTGCGCCGACAGGCGGCG
CCCTGA