ViewGene
Locus Name:
GeneID:
Location:

GeneID:1108
TrivialName: PA14_47260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47260
PAO1 Ortholog Locus:PA1313
Sequence Length:1359
Protein Length:452
Start: 4211259
Stop: 4209901
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04702.1|AE004560_10 (AE004560) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 451/452 (99%), Positives = 452/452 (100%)
Sequence:
ATGAATCAACCGTCCCGCCTGGCCACTTTGTACCTGCTGGGGTTCGCCCTGGACCTGGTGAACATCTTCATC
GCCAGCGTCGCCTACCCGGACATCGGGCGTTCCCTTGGCGCTTCGGTGGCGACCCTGGCGTGGATCGGCAAC
ACCTACCTGCTCGGCTTGACCCTGGTGATTCCGTTGAGCGTCTGGCTCGCTTCGCGCCTGGGAGAACGGCGA
CTGATGCTGCTGGCACTGGCCGGTTTCGCCAGCGCTTCGCTGGGTTGCGGCCTGGCTGGATCGGCGGCGACG
TTGATCGTCTGGCGCCTGTGCCAGGGGTTGGCCGGCGGGTTACTGATCCCCCTCGGCCAGGCCATGGCCTAT
CGGAATGTCCCGTCGTCGGCACGGGCCGGCCTGACCGCACGGGTGATGCTGGTGGCGCTGATCGTTCCCGCC
GTGGCGCCTGCCCTCGGCGGCTGGCTGGTGGACAGCCTGTCCTGGCGTGGGATCTTCTTCGCCAGCGTGGCG
CCGGCGCTGCTGGTGCTGGCCCTGGCGATGCGCTGGCTGCCCAGGCACAAGCATGCGGCGCAGCGCCTGGAC
CTGCGCGGCCTGCTGCTCGGCTCGGCGGCGCTGGCCACGCTGCTGGTGGCGCTCGCCTGGCTGGGATCGCCC
GGCGGCGGCGGGCGTGGCCTGCTCCTGGCGCTGCTGGCCTGCGTGCTGGGCTGCTGCTACTGGCGTGACGGG
CGCGCTCGTACCGACGCGCTGCTCGACCTTGGCTTGCTGGAGGCGCCATTGCTGCGTACGGCGATGCTGGTC
TATCTCTGCGTGCCGGGAGCCTTCATGGGCGCCAACCTGGTCGCCATGCTCTATCTGCAAGGCCCCCTCGGC
CTCAGCGCGAGCCGTGCCGGTGCGCTGATGCTGCCCTGGGCGCTGGCGGCCGGCCTGGCCATCGGCCTGACC
CGGCGACGCTTCAATCGCTGGGGGCCGAAATCCTTGCTGCTGGCGGGCATGGCGATACAGGCCGGCGGCCTG
CTGTGGCTGGCTCGAAGCGGGGAGGGGAGCGGCTTCTGGCAACTGGCGGGGGCCTACGCGACCATGGGATTC
GGCGGCAGCCTGTGTAGCAGCGCGGCACAGGGCATGGCCTTGCTCGACGTCCCGGCGGCGCGCATGGGCCAT
GCCAGCGCCTTGTGGAACATCAATCGGCAACTGGCGTTCTGCCTGGGCATGGCCGTGCTCGGTGGGTTGCTC
AACCTGTTGCAGGCGCGGGCCGACCCCGCGGCCTTCGTCCACTGCTTCCTGTTCGCCGCCGCTTTCACGCTA
TTGCCTCTGCCGTGGGTGAGGCGTATCGATTCCGCCGGGGTTCGCGCCCTGGTCCAGACCTGA
Translation:
MNQPSRLATLYLLGFALDLVNIFIASVAYPDIGRSLGASVATLAWIGNTYLLGLTLVIPLSVWLASRLGERR
LMLLALAGFASASLGCGLAGSAATLIVWRLCQGLAGGLLIPLGQAMAYRNVPSSARAGLTARVMLVALIVPA
VAPALGGWLVDSLSWRGIFFASVAPALLVLALAMRWLPRHKHAAQRLDLRGLLLGSAALATLLVALAWLGSP
GGGGRGLLLALLACVLGCCYWRDGRARTDALLDLGLLEAPLLRTAMLVYLCVPGAFMGANLVAMLYLQGPLG
LSASRAGALMLPWALAAGLAIGLTRRRFNRWGPKSLLLAGMAIQAGGLLWLARSGEGSGFWQLAGAYATMGF
GGSLCSSAAQGMALLDVPAARMGHASALWNINRQLAFCLGMAVLGGLLNLLQARADPAAFVHCFLFAAAFTL
LPLPWVRRIDSAGVRALVQT*
AnnotationID:1117GeneID:1108
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 06:06:34
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA1313
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative membrane transport protein
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO70371.1| (AE016843) possible membrane transport protein [Salmonella enterica
           subsp. enterica serovar Typhi Ty2]
          Length = 402

 Score =  314 bits (804), Expect = 8e-85
 Identities = 185/436 (42%), Positives = 251/436 (57%), Gaps = 55/436 (12%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2219




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19361




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37486




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1108_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1108
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1992
                           PA1313_tr
                           translation of PA1313
                           452
                           99.77
                           99.99
                           0
                           2291.0
     

     
     
68010
                           gb|AAG04702.1|AE004560_10
                           (AE004560) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           452
                           99.77
                           99.99
                           0
                           2291.0
     

     
     
68011
                           gb|AAO70371.1|
                           (AE016843) possible membrane transport protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           458
                           41.04
                           56.55
                           62
                           829.0
     

     
     
68012
                           emb|CAD06017.1|
                           (AL627276) possible membrane transport protein [Salmonella enterica subsp. enterica serovar Typhi]
                           458
                           41.04
                           56.55
                           62
                           829.0
     

     
     
68013
                           gb|AAL21791.1|
                           (AE008832) putative permease [Salmonella typhimurium LT2]
                           458
                           40.61
                           56.55
                           62
                           824.0
     

     






      

          
GC ORFID: 44110How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1313Glimmer Score: 

          
Start: 742650Stop: 744008

          
Length: 1359


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1313 translation of PA1313Homolog Bit Score 887.0

          
Other Homologs:  t_PA1313 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCAACCGTCCCGCCTGGCCACTTTGTACCTGCTGGGGTTCGCCCTGGACCTGGTGAACATCTTCATC 
GCCAGCGTCGCCTACCCGGACATCGGGCGTTCCCTTGGCGCTTCGGTGGCGACCCTGGCGTGGATCGGCAAC 
ACCTACCTGCTCGGCTTGACCCTGGTGATTCCGTTGAGCGTCTGGCTCGCTTCGCGCCTGGGAGAACGGCGA 
CTGATGCTGCTGGCACTGGCCGGTTTCGCCAGCGCTTCGCTGGGTTGCGGCCTGGCTGGATCGGCGGCGACG 
TTGATCGTCTGGCGCCTGTGCCAGGGGTTGGCCGGCGGGTTACTGATCCCCCTCGGCCAGGCCATGGCCTAT 
CGGAATGTCCCGTCGTCGGCACGGGCCGGCCTGACCGCACGGGTGATGCTGGTGGCGCTGATCGTTCCCGCC 
GTGGCGCCTGCCCTCGGCGGCTGGCTGGTGGACAGCCTGTCCTGGCGTGGGATCTTCTTCGCCAGCGTGGCG 
CCGGCGCTGCTGGTGCTGGCCCTGGCGATGCGCTGGCTGCCCAGGCACAAGCATGCGGCGCAGCGCCTGGAC 
CTGCGCGGCCTGCTGCTCGGCTCGGCGGCGCTGGCCACGCTGCTGGTGGCGCTCGCCTGGCTGGGATCGCCC 
GGCGGCGGCGGGCGTGGCCTGCTCCTGGCGCTGCTGGCCTGCGTGCTGGGCTGCTGCTACTGGCGTGACGGG 
CGCGCTCGTACCGACGCGCTGCTCGACCTTGGCTTGCTGGAGGCGCCATTGCTGCGTACGGCGATGCTGGTC 
TATCTCTGCGTGCCGGGAGCCTTCATGGGCGCCAACCTGGTCGCCATGCTCTATCTGCAAGGCCCCCTCGGC 
CTCAGCGCGAGCCGTGCCGGTGCGCTGATGCTGCCCTGGGCGCTGGCGGCCGGCCTGGCCATCGGCCTGACC 
CGGCGACGCTTCAATCGCTGGGGGCCGAAATCCTTGCTGCTGGCGGGCATGGCGATACAGGCCGGCGGCCTG 
CTGTGGCTGGCTCGAAGCGGGGAGGGGAGCGGCTTCTGGCAACTGGCGGGGGCCTACGCGACCATGGGATTC 
GGCGGCAGCCTGTGTAGCAGCGCGGCACAGGGCATGGCCTTGCTCGACGTCCCGGCGGCGCGCATGGGCCAT 
GCCAGCGCCTTGTGGAACATCAATCGGCAACTGGCGTTCTGCCTGGGCATGGCCGTGCTCGGTGGGTTGCTC 
AACCTGTTGCAGGCGCGGGCCGACCCCGCGGCCTTCGTCCACTGCTTCCTGTTCGCCGCCGCTTTCACGCTA 
TTGCCTCTGCCGTGGGTGAGGCGTATCGATTCCGCCGGGGTTCGCGCCCTGGTCCAGACCTGA