ViewGene
Locus Name:
GeneID:
Location:

GeneID:1107
TrivialName: PA14_23240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23240
PAO1 Ortholog Locus:PA3170
Sequence Length:1335
Protein Length:444
Start: 2013331
Stop: 2011997
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06558.1|AE004741_3 (AE004741) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 443/444 (99%), Positives = 444/444 (100%)
Sequence:
ATGCCCAACGTCCGTAACCCCTTCGACCTCCTCCTGCTGCCGACCTGGATCGTCCCCGTGGAGCCCGCCGGG
GTGGTGCTGCGCGATCACGCGCTGGGCATCCGCGACGGCCAGATCGCCCTGGTCGCGCCGCGCGAGCAGGCC
ATGCGCCATGGCGCCACGGAAATCCGCGAATTGCCCGGCATGCTGCTCGCCCCCGGCCTGGTCAACGCCCAC
GGCCATTCGGCAATGAGTCTGTTCCGCGGTCTCGCCGACGACCTGCCGCTGATGACCTGGCTGCAGGACCAC
ATCTGGCCGGCCGAAGGCCAATGGGTCAGCGAGGACTTCATCCGCGACGGCACGGAGCTGGCCATCGCCGAA
CAGGTAAAGGGCGGCATCACCTGTTTCTCCGACATGTACTTCTATCCACAGGCCATCTGCGGCGTGGTCCAT
GACAGCGGGGTACGCGCCCAGGTGGCGATCCCGGTGCTGGACTTCCCGATCCCCGGCGCCCGCGACAGCGCC
GAGGCGATCCGCCAGGGCATGGCACTGTTCGACGACCTCAAGCACCACCCGCGCATCCGCATCGCCTTCGGC
CCGCACGCCCCTTATACGGTGAGCGACGACAAGCTGGAGCAGATCCTGGTGCTCACCGAGGAACTCGACGCC
AGCATCCAGATGCACGTCCACGAGACCGCCTTCGAGGTGGAGCAGGCCATGGAGCGCAACGGCGAGCGCCCG
TTGGCCCGCCTGCACCGCCTCGGCCTGCTCGGCCCGCGCTTCCAGGCGGTGCACATGACCCAGGTAGACGAC
GACGACCTGGCGATGCTGGTGGAAACCAACAGTTCGGTGATCCACTGCCCGGAATCCAACCTCAAGCTGGCC
AGCGGCTTCTGCCCGGTGGAAAAGCTCTGGCAGGCCGGGGTCAACGTGGCCATCGGCACCGACGGCGCGGCC
AGCAACAACGACCTCGACCTGCTCGGCGAGACCCGCACCGCGGCGCTGCTGGCCAAGGCAGTGTACGGCCAG
GCCACCGCCCTCGACGCCCACCGCGCGCTGCGCATGGCCACCCTGAACGGAGCCCGCGCGCTTGGCCTGGAG
CGCCTGATCGGCTCCCTGGAAGCCGGCAAGGCCGCCGACCTGGTGGCCTTCGACCTGTCCGGCCTGGCCCAG
CAACCGGTCTACGACCCGGTTTCGCAACTTATCTATGCCAGCGGCCGCGACTGCGTGCGGCATGTCTGGGTC
GGCGGCAGGCAACTCCTCGACGACGGCCGCCTGCTCCGTCACGACGAACAGCGCCTGATCGCCAGGGCCCGC
GAATGGGGGGCGAAGATCGCCGCCAGCGACAGGTCCTGA
Translation:
MPNVRNPFDLLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGATEIRELPGMLLAPGLVNAH
GHSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFSDMYFYPQAICGVVH
DSGVRAQVAIPVLDFPIPGARDSAEAIRQGMALFDDLKHHPRIRIAFGPHAPYTVSDDKLEQILVLTEELDA
SIQMHVHETAFEVEQAMERNGERPLARLHRLGLLGPRFQAVHMTQVDDDDLAMLVETNSSVIHCPESNLKLA
SGFCPVEKLWQAGVNVAIGTDGAASNNDLDLLGETRTAALLAKAVYGQATALDAHRALRMATLNGARALGLE
RLIGSLEAGKAADLVAFDLSGLAQQPVYDPVSQLIYASGRDCVRHVWVGGRQLLDDGRLLRHDEQRLIARAR
EWGAKIAASDRS*
AnnotationID:1116GeneID:1107
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 13:01:07
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA3170
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0402
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55263.1| (AE016862) hydrolase, Atz/Trz family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 443

 Score =  692 bits (1786), Expect = 0.0
 Identities = 329/439 (74%), Positives = 384/439 (87%)

>gb|AAO29333.1| (AE012558) N-ethylammeline chlorohydrolase [Xylella fastidiosa
           Temecula1]
          Length = 435

 Score =  410 bits (1055), Expect = e-114

>gb|AAO90067.1| (AE016961) chlorohydrolase family protein [Coxiella burnetii RSA
           493]
          Length = 451

 Score =  403 bits (1036), Expect = e-111
 Identities = 204/430 (47%), Positives = 280/430 (65%), Gaps = 1/430 (0%)








 
Structural Features:
COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases 
[Nucleotide transport and metabolism]
CD-Length = 421 residues,  99.5% aligned
Score =  316 bits (810), Expect = 4e-87
Identities = 169/428 (39%), Positives = 233/428 (54%), Gaps = 18/428 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2217




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19359




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32372




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1107_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1107
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1991
                           PA3170_tr
                           translation of PA3170
                           444
                           99.77
                           99.99
                           0
                           2294.0
     

     
     
68001
                           gb|AAG06558.1|AE004741_3
                           (AE004741) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           444
                           99.77
                           99.99
                           0
                           2294.0
     

     
     
68002
                           gb|AAO55263.1|
                           (AE016862) hydrolase, Atz/Trz family [Pseudomonas syringae pv. tomato str. DC3000]
                           444
                           74.09
                           86.48
                           1
                           1784.0
     

     
     
68003
                           gb|AAM37230.1|
                           (AE011874) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           453
                           48.78
                           61.81
                           13
                           1073.0
     

     
     
68004
                           gb|AAM41549.1|
                           (AE012334) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           453
                           48.34
                           61.14
                           13
                           1059.0
     

     






      

          
GC ORFID: 44109How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3170Glimmer Score: 

          
Start: 2940600Stop: 2941934

          
Length: 1335


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3170 translation of PA3170Homolog Bit Score 888.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7688 (ORF: BLASTX 700.0), t_PA3170 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAACGTCCGTAACCCCTTCGACCTCCTCCTGCTGCCGACCTGGATCGTCCCCGTGGAGCCCGCCGGG 
GTGGTGCTGCGCGATCACGCGCTGGGCATCCGCGACGGCCAGATCGCCCTGGTCGCGCCGCGCGAGCAGGCC 
ATGCGCCATGGCGCCACGGAAATCCGCGAATTGCCCGGCATGCTGCTCGCCCCCGGCCTGGTCAACGCCCAC 
GGCCATTCGGCAATGAGTCTGTTCCGCGGTCTCGCCGACGACCTGCCGCTGATGACCTGGCTGCAGGACCAC 
ATCTGGCCGGCCGAAGGCCAATGGGTCAGCGAGGACTTCATCCGCGACGGCACGGAGCTGGCCATCGCCGAA 
CAGGTAAAGGGCGGCATCACCTGTTTCTCCGACATGTACTTCTATCCACAGGCCATCTGCGGCGTGGTCCAT 
GACAGCGGGGTACGCGCCCAGGTGGCGATCCCGGTGCTGGACTTCCCGATCCCCGGCGCCCGCGACAGCGCC 
GAGGCGATCCGCCAGGGCATGGCACTGTTCGACGACCTCAAGCACCACCCGCGCATCCGCATCGCCTTCGGC 
CCGCACGCCCCTTATACGGTGAGCGACGACAAGCTGGAGCAGATCCTGGTGCTCACCGAGGAACTCGACGCC 
AGCATCCAGATGCACGTCCACGAGACCGCCTTCGAGGTGGAGCAGGCCATGGAGCGCAACGGCGAGCGCCCG 
TTGGCCCGCCTGCACCGCCTCGGCCTGCTCGGCCCGCGCTTCCAGGCGGTGCACATGACCCAGGTAGACGAC 
GACGACCTGGCGATGCTGGTGGAAACCAACAGTTCGGTGATCCACTGCCCGGAATCCAACCTCAAGCTGGCC 
AGCGGCTTCTGCCCGGTGGAAAAGCTCTGGCAGGCCGGGGTCAACGTGGCCATCGGCACCGACGGCGCGGCC 
AGCAACAACGACCTCGACCTGCTCGGCGAGACCCGCACCGCGGCGCTGCTGGCCAAGGCAGTGTACGGCCAG 
GCCACCGCCCTCGACGCCCACCGCGCGCTGCGCATGGCCACCCTGAACGGAGCCCGCGCGCTTGGCCTGGAG 
CGCCTGATCGGCTCCCTGGAAGCCGGCAAGGCCGCCGACCTGGTGGCCTTCGACCTGTCCGGCCTGGCCCAG 
CAACCGGTCTACGACCCGGTTTCGCAACTTATCTATGCCAGCGGCCGCGACTGCGTGCGGCATGTCTGGGTC 
GGCGGCAGGCAACTCCTCGACGACGGCCGCCTGCTCCGTCACGACGAACAGCGCCTGATCGCCAGGGCCCGC 
GAATGGGGGGCGAAGATCGCCGCCAGCGACAGGTCCTGA