ViewGene
Locus Name:
GeneID:
Location:

GeneID:1106
TrivialName: PA14_31800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31800
PAO1 Ortholog Locus:PA2533
Sequence Length:1350
Protein Length:449
Start: 2765588
Stop: 2766937
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05921.1|AE004681_3 (AE004681) probable sodium:alanine symporter [Pseudomonas aeruginosa PAO1]
Identities = 448/449 (99%), Positives = 448/449 (99%)
Sequence:
ATGGAAAGCTTGCAGAAGTGGGTGGTCGACCTGAACGGCGTGGTCTGGGGGCCGTTGATGCTGGTGCTGATT
CTCGGCACCGGCCTGTACCTGATGCTGGGGTTGAAATTCATGCCCCTGGTGCGCCTGGGAGTCGGCTTTCGC
CTGCTCTGGCAGGGGCGTAGCAAGGATGACGAGAGCAGCGGCGAGATCAGCCCGTTCCAGGCGCTGATGACC
TGCCTGGCGGCCACCGTCGGTACCGGCAACATCGCCGGGGTGGCCACGGCGATCTTCCTCGGCGGCCCGGGC
GCACTGTTCTGGATGTGGTGCACCGCGCTGGTGGGAATGGCCACCAAGTTCTCCGAAGTGGTGCTGGCGGTG
CACTACCGCGAGAAGGATGAGCGCAACGAACACGTCGGCGGTCCGATGTATGCCATCAAGAACGGTCTGGGC
AAGCGCTGGGCCTGGCTCGGCGCGGCCTTCGCGCTGTTCGGCGGGCTCGCCGGCTTCGGTATCGGCAACATG
GTCCAGGTCAACAGCATGGCCGATGCCCTGGAGGTTTCCTTCGGCGTGCCCGACTGGGTCACCGGGGTCGCC
ACCATGCTCGTCACCGGGCTGGTGATCCTTGGCGGCATCCGCCGTATCGGCAAGGTCGCCGAAGCCCTGGTG
CCGTTCATGTGCGTCGGCTACATCGTCGCCTCGGTGATCGTCCTGGTGGTCCATGCCGAGGCGATTCCCGGC
GCGTTCCAACTGATCTTCACCCACGCCTTCACGCCGATCGCCGCCACCGGCGGCTTCGCCGGCGCAGCGGTG
ATGGCGGCAATCCGTTTCGGCGTCGCACGCGGGATCTTCTCCAACGAGGCTGGCCTCGGCACCGCCGGCATC
GCCCAGGCCGCCGGCACGACCCATAGCGCGGTGCGTTCGGGCCTGATCGGTATGCTCGGCACCTTCATCGAT
ACCCTGATCATCTGCAGCCTGACCGGCCTGGCGATCATCACCTCGGGCGTCTGGACCAGCGGCGCCAGCGGC
GCGGCGCTGTCCTCGGCGGCGTTCGAGGCGGCGATGCCGGGCGTCGGCCACTACATCCTGTCGCTGGCCCTG
GTGGTGTTCGCCTATACCACCATCCTCGGCTGGAGCTACTACGGCGAGCGCTGCTGGGAGTACCTGGTGGGC
ACCCGGGCGATCCTGCCGTTCCGGATCGTCTGGACCCTGGCGATTCCGTTCGGCGCCATGACCCAGCTGGAC
TTCGCCTGGCTGGTGGCGGATACCCTCAACGCGCTGATGGCGATTCCCAACCTGATCGCCTTGCTGCTGCTG
AGTCCGGTGGTGTTCCGCCTGACCCGGGAGTATTTCGCCAAGGCCAGGAGTTGA
Translation:
MESLQKWVVDLNGVVWGPLMLVLILGTGLYLMLGLKFMPLVRLGVGFRLLWQGRSKDDESSGEISPFQALMT
CLAATVGTGNIAGVATAIFLGGPGALFWMWCTALVGMATKFSEVVLAVHYREKDERNEHVGGPMYAIKNGLG
KRWAWLGAAFALFGGLAGFGIGNMVQVNSMADALEVSFGVPDWVTGVATMLVTGLVILGGIRRIGKVAEALV
PFMCVGYIVASVIVLVVHAEAIPGAFQLIFTHAFTPIAATGGFAGAAVMAAIRFGVARGIFSNEAGLGTAGI
AQAAGTTHSAVRSGLIGMLGTFIDTLIICSLTGLAIITSGVWTSGASGAALSSAAFEAAMPGVGHYILSLAL
VVFAYTTILGWSYYGERCWEYLVGTRAILPFRIVWTLAIPFGAMTQLDFAWLVADTLNALMAIPNLIALLLL
SPVVFRLTREYFAKARS*
AnnotationID:1115GeneID:1106
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 21:09:10
Gene Name:
Confidence Code:3
GeneProduct:putative sodium:alanine symporter
Cell Localization:()
Synonyms:PA2533
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1115,pfam01235
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE42579.1| (BX640417) putative sodium:alanine symporter [Bordetella pertussis]
          Length = 451

 Score =  704 bits (1817), Expect = 0.0
 Identities = 338/446 (75%), Positives = 392/446 (87%)

>emb|CAC48469.1| (AL603642) putative amino acid carrier protein [Sinorhizobium
           meliloti]
          Length = 467

 Score =  615 bits (1587), Expect = e-175
 Identities = 296/449 (65%), Positives = 368/449 (81%)

>emb|CAE20368.1| (BX572095) Sodium:alanine symporter family [Prochlorococcus
           marinus]
          Length = 464

 Score =  458 bits (1178), Expect = e-128
 Identities = 238/434 (54%), Positives = 305/434 (70%), Gaps = 9/434 (2%)








 
Structural Features:
COG1115, AlsT, Na+/alanine symporter 
[Amino acid transport and metabolism]
CD-Length = 452 residues,  99.3% aligned
Score =  500 bits (1290), Expect = 1e-142
Identities = 229/452 (50%), Positives = 298/452 (65%), Gaps = 6/452 (1%)

pfam01235, Na_Ala_symp, Sodium:alanine symporter family.
CD-Length = 415 residues,  93.3% aligned
Score =  356 bits (915), Expect = 3e-99
Identities = 171/389 (43%), Positives = 245/389 (62%), Gaps = 6/389 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2215




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19357




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33094




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1106_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1106
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1990
                           PA2533_tr
                           translation of PA2533
                           449
                           99.77
                           99.77
                           0
                           2295.0
     

     
     
67945
                           gb|AAG05921.1|AE004681_3
                           (AE004681) probable sodium:alanine symporter [Pseudomonas aeruginosa PAO1]
                           449
                           99.77
                           99.77
                           0
                           2295.0
     

     
     
67946
                           emb|CAE42579.1|
                           (BX640417) putative sodium:alanine symporter [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           453
                           74.61
                           86.53
                           6
                           1817.0
     

     
     
67947
                           emb|CAC48469.1|
                           (AL603642) putative amino acid carrier protein [Sinorhizobium meliloti]
                           467
                           63.38
                           78.80
                           18
                           1587.0
     

     
     
67948
                           emb|CAE16112.1|
                           (BX571871) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           458
                           59.38
                           75.10
                           12
                           1423.0
     

     






      

          
GC ORFID: 44108How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2533Glimmer Score: 

          
Start: 2188338Stop: 2186989

          
Length: 1350


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2533 translation of PA2533Homolog Bit Score 888.0

          
Other Homologs:  t_PA2533 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAAGCTTGCAGAAGTGGGTGGTCGACCTGAACGGCGTGGTCTGGGGGCCGTTGATGCTGGTGCTGATT 
CTCGGCACCGGCCTGTACCTGATGCTGGGGTTGAAATTCATGCCCCTGGTGCGCCTGGGAGTCGGCTTTCGC 
CTGCTCTGGCAGGGGCGTAGCAAGGATGACGAGAGCAGCGGCGAGATCAGCCCGTTCCAGGCGCTGATGACC 
TGCCTGGCGGCCACCGTCGGTACCGGCAACATCGCCGGGGTGGCCACGGCGATCTTCCTCGGCGGCCCGGGC 
GCACTGTTCTGGATGTGGTGCACCGCGCTGGTGGGAATGGCCACCAAGTTCTCCGAAGTGGTGCTGGCGGTG 
CACTACCGCGAGAAGGATGAGCGCAACGAACACGTCGGCGGTCCGATGTATGCCATCAAGAACGGTCTGGGC 
AAGCGCTGGGCCTGGCTCGGCGCGGCCTTCGCGCTGTTCGGCGGGCTCGCCGGCTTCGGTATCGGCAACATG 
GTCCAGGTCAACAGCATGGCCGATGCCCTGGAGGTTTCCTTCGGCGTGCCCGACTGGGTCACCGGGGTCGCC 
ACCATGCTCGTCACCGGGCTGGTGATCCTTGGCGGCATCCGCCGTATCGGCAAGGTCGCCGAAGCCCTGGTG 
CCGTTCATGTGCGTCGGCTACATCGTCGCCTCGGTGATCGTCCTGGTGGTCCATGCCGAGGCGATTCCCGGC 
GCGTTCCAACTGATCTTCACCCACGCCTTCACGCCGATCGCCGCCACCGGCGGCTTCGCCGGCGCAGCGGTG 
ATGGCGGCAATCCGTTTCGGCGTCGCACGCGGGATCTTCTCCAACGAGGCTGGCCTCGGCACCGCCGGCATC 
GCCCAGGCCGCCGGCACGACCCATAGCGCGGTGCGTTCGGGCCTGATCGGTATGCTCGGCACCTTCATCGAT 
ACCCTGATCATCTGCAGCCTGACCGGCCTGGCGATCATCACCTCGGGCGTCTGGACCAGCGGCGCCAGCGGC 
GCGGCGCTGTCCTCGGCGGCGTTCGAGGCGGCGATGCCGGGCGTCGGCCACTACATCCTGTCGCTGGCCCTG 
GTGGTGTTCGCCTATACCACCATCCTCGGCTGGAGCTACTACGGCGAGCGCTGCTGGGAGTACCTGGTGGGC 
ACCCGGGCGATCCTGCCGTTCCGGATCGTCTGGACCCTGGCGATTCCGTTCGGCGCCATGACCCAGCTGGAC 
TTCGCCTGGCTGGTGGCGGATACCCTCAACGCGCTGATGGCGATTCCCAACCTGATCGCCTTGCTGCTGCTG 
AGTCCGGTGGTGTTCCGCCTGACCCGGGAGTATTTCGCCAAGGCCAGGAGTTGA