ViewGene
Locus Name:
GeneID:
Location:

GeneID:1105
TrivialName: PA14_44190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44190
PAO1 Ortholog Locus:PA1569
Sequence Length:1389
Protein Length:462
Start: 3932315
Stop: 3933703
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04958.1|AE004585_6 (AE004585) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 445/462 (96%), Positives = 447/462 (96%), Gaps = 6/462 (1%)
Sequence:
ATGAATCAACGTCCCGGGACGGCGCTGCCGTCCTCTCCCGTGTCCAGCTTCCAGCGCTGGCGCCTGCAGATA
TTCGCGATCACCTGGCTGGCCTACGCCGCCTTCTATTTCACCCGCAAGGCCTTTTCCGTCGCCAAGCTCGGC
ATCGCCGAAGATCCGGGCTTCCAGTTGGACAAGATGGCGATGGCCGATCTCGACGCCATCTACCTCGCCGCC
TATGCCGTCGGCCAGTTCACCTGGGGCGTGCTGGCCGACCGCTTCGGCCCGCGCATCGTGGTGTTCGGCGGC
CTGCTGATCTCCGCACTGGCCGCGCTGGTCATGGGCACCTTCGCCACCCTGCCGATCTTCGCCACTTGCATG
GTGGTCCAGGGACTGGCGCAGTCCACCGGCTGGTCGGGGCTGTGCAAGAACATCGGCAGTTTCTTCGCCACC
CACGAACGCGGTCGGGTGCTCGGCCTGTGGAGCACCTGCTACGCCTTCGGCGGACTGGTCGCCTCGCCGTTC
GCCGGCTGGTGGGCGTACAGCGTGTTCGGTACCTGGCACGCGGCGTTCTACTCCAGCGCCGCGGTGGTCGGC
GGCGTGGCCCTGCTGTTCCTGTTGTTGCAGCGCAACCGCCCGGAGGACGTCGGCCATCCACCCGTCGAACCG
CAGGTCGCGAGCGAGGCCGTGCGCTATGCCGGCTTCAGGCCGGAAGGCGGCAACGGCGGCAACGGCGGCAAC
GGCGGCAACGGCGGCAGCCTGCAGGTACTCGCCAAGGTGGTGCGCAACCGCACGGTGCTCTGCCTCGGCCTG
GCCTACTTCCTGCTCAAGCCGGCGCGCTACGCGATCCTCCTGTGGGGACCGGTGATCGTCTACGAACGCATG
CCGGCGCTCGGCAAGGTCGGCGCGGCGATCGTTCCCACCGCCTTCGAGGTAGCCGGCCTGCTCGGCCCGATC
CTGATCGGCTTCGcCTCggaCAAGCTGTTCGGCGCACGGCGCATGCCGGCCTGCGTGATCAGCCTGCTGGCG
CTGACCGTCTGCCTGGCGCTGTTCGTCcccgCGATGACCACCGGCAGCATTCCGATAGTGGTCGGCCTGCTG
TTCATGATGGGACTGACCCTGTACggcCCGGACTCGATGATCTGCGGCTCCGCCGCCATCGACTTCGGCACC
GGCGAGGCCGCCGGCACCGCCTCCGGCTTCGTCAATGGCTGCGGTTCGGTGGGCGCGATCCTCGGTGGCCTG
CTGCCCGGCTATTTCGACACCTACACGGTGTTCATCGGCTTCACCGTCGCCGCCCTGATCGCCACCGCGGTG
CTCCTCCCGCACTGGAACAGCCGACCCGACGGTGTTGTGAAAGGCCACAGGAACATCCCCAGCCTGGGGGAC
TTCCGCCCGATCCGCTCCTGA
Translation:
MNQRPGTALPSSPVSSFQRWRLQIFAITWLAYAAFYFTRKAFSVAKLGIAEDPGFQLDKMAMADLDAIYLAA
YAVGQFTWGVLADRFGPRIVVFGGLLISALAALVMGTFATLPIFATCMVVQGLAQSTGWSGLCKNIGSFFAT
HERGRVLGLWSTCYAFGGLVASPFAGWWAYSVFGTWHAAFYSSAAVVGGVALLFLLLQRNRPEDVGHPPVEP
QVASEAVRYAGFRPEGGNGGNGGNGGNGGSLQVLAKVVRNRTVLCLGLAYFLLKPARYAILLWGPVIVYERM
PALGKVGAAIVPTAFEVAGLLGPILIGFASDKLFGARRMPACVISLLALTVCLALFVPAMTTGSIPIVVGLL
FMMGLTLYGPDSMICGSAAIDFGTGEAAGTASGFVNGCGSVGAILGGLLPGYFDTYTVFIGFTVAALIATAV
LLPHWNSRPDGVVKGHRNIPSLGDFRPIRS*
AnnotationID:1114GeneID:1105
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 12:12:05
Gene Name:
Confidence Code:3
GeneProduct:putative sugar MFS transporter
Cell Localization:()
Synonyms:PA1569
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2271
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68157.1|AE016447_6 (AE016783) sugar MFS transporter, putative [Pseudomonas putida
           KT2440]
          Length = 438

 Score =  642 bits (1655), Expect = 0.0
 Identities = 324/451 (71%), Positives = 371/451 (82%), Gaps = 19/451 (4%)








 
Structural Features:
COG2271, UhpC, Sugar phosphate permease 
[Carbohydrate transport and metabolism]
CD-Length = 448 residues,  96.7% aligned
Score =  385 bits (990), Expect = 7e-108
Identities = 157/447 (35%), Positives = 228/447 (51%), Gaps = 20/447 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2213




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19355




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37281




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1105_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1105
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1988
                           PA1569_tr
                           translation of PA1569
                           462
                           96.32
                           96.75
                           6
                           2299.0
     

     
     
67942
                           gb|AAG04958.1|AE004585_6
                           (AE004585) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           462
                           96.32
                           96.75
                           6
                           2299.0
     

     
     
1989
                           PA1144_tr
                           translation of PA1144
                           465
                           70.75
                           78.06
                           24
                           1645.0
     

     
     
67944
                           gb|AAG04533.1|AE004544_5
                           (AE004544) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           465
                           70.75
                           78.06
                           24
                           1645.0
     

     
     
67943
                           gb|AAN68157.1|AE016447_6
                           (AE016783) sugar MFS transporter, putative [Pseudomonas putida KT2440]
                           464
                           70.47
                           80.60
                           28
                           1670.0
     

     






      

          
GC ORFID: 44107How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1569Glimmer Score: 

          
Start: 1021594Stop: 1020206

          
Length: 1389


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1569 translation of PA1569Homolog Bit Score 888.0

          
Other Homologs:  t_PA1144 (ORF: BLASTX 633.0), t_PA1569 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCAACGTCCCGGGACGGCGCTGCCGTCCTCTCCCGTGTCCAGCTTCCAGCGCTGGCGCCTGCAGATA 
TTCGCGATCACCTGGCTGGCCTACGCCGCCTTCTATTTCACCCGCAAGGCCTTTTCCGTCGCCAAGCTCGGC 
ATCGCCGAAGATCCGGGCTTCCAGTTGGACAAGATGGCGATGGCCGATCTCGACGCCATCTACCTCGCCGCC 
TATGCCGTCGGCCAGTTCACCTGGGGCGTGCTGGCCGACCGCTTCGGCCCGCGCATCGTGGTGTTCGGCGGC 
CTGCTGATCTCCGCACTGGCCGCGCTGGTCATGGGCACCTTCGCCACCCTGCCGATCTTCGCCACTTGCATG 
GTGGTCCAGGGACTGGCGCAGTCCACCGGCTGGTCGGGGCTGTGCAAGAACATCGGCAGTTTCTTCGCCACC 
CACGAACGCGGTCGGGTGCTCGGCCTGTGGAGCACCTGCTACGCCTTCGGCGGACTGGTCGCCTCGCCGTTC 
GCCGGCTGGTGGGCGTACAGCGTGTTCGGTACCTGGCACGCGGCGTTCTACTCCAGCGCCGCGGTGGTCGGC 
GGCGTGGCCCTGCTGTTCCTGTTGTTGCAGCGCAACCGCCCGGAGGACGTCGGCCATCCACCCGTCGAACCG 
CAGGTCGCGAGCGAGGCCGTGCGCTATGCCGGCTTCAGGCCGGAAGGCGGCAACGGCGGCAACGGCGGCAAC 
GGCGGCAACGGCGGCAGCCTGCAGGTACTCGCCAAGGTGGTGCGCAACCGCACGGTGCTCTGCCTCGGCCTG 
GCCTACTTCCTGCTCAAGCCGGCGCGCTACGCGATCCTCCTGTGGGGACCGGTGATCGTCTACGAACGCATG 
CCGGCGCTCGGCAAGGTCGGCGCGGCGATCGTTCCCACCGCCTTCGAGGTAGCCGGCCTGCTCGGCCCGATC 
CTGATCGGCTTCGcCTCggaCAAGCTGTTCGGCGCACGGCGCATGCCGGCCTGCGTGATCAGCCTGCTGGCG 
CTGACCGTCTGCCTGGCGCTGTTCGTCcccgCGATGACCACCGGCAGCATTCCGATAGTGGTCGGCCTGCTG 
TTCATGATGGGACTGACCCTGTACggcCCGGACTCGATGATCTGCGGCTCCGCCGCCATCGACTTCGGCACC 
GGCGAGGCCGCCGGCACCGCCTCCGGCTTCGTCAATGGCTGCGGTTCGGTGGGCGCGATCCTCGGTGGCCTG 
CTGCCCGGCTATTTCGACACCTACACGGTGTTCATCGGCTTCACCGTCGCCGCCCTGATCGCCACCGCGGTG 
CTCCTCCCGCACTGGAACAGCCGACCCGACGGTGTTGTGAAAGGCCACAGGAACATCCCCAGCCTGGGGGAC 
TTCCGCCCGATCCGCTCCTGA