ViewGene

Locus Name:
GeneID:
Location:

GeneID:1104
TrivialName: PA14_60000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60000
PAO1 Ortholog Locus:
Sequence Length:1383
Protein Length:460
Start: 5342744
Stop: 5344126
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84143.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 458/460 (99%), Positives = 459/460 (99%)
Sequence:
ATGCGAATGAACATCACCTCGGTCGCGCTAATGTGGCTGCTCGCAGCGCAACTTGCCCAGGCCGACGACCCG
ATCAACGTGTCCAAGACCGGCACGGTGCTCAGCGACGAGGTCCTCTACAGCATTGGCGGCGGCAGTGCGGTG
AGCATGGGCAGCGCCGGCCAGATGGACTCGATCGGCGTCGGCTTCGGCTGGAACAACGACATGATGTGCGGA
AACATGAACCTGAGCACCACCCTGGAGAACCAGCTCAACGGTGCCACACAGGGTTTCCAGAACATCATGGGC
TCAGTCATCCAGAACGCGACCGGCGCGGTCATGTCGCTGCCGGCGTTGATCATCCAGCGCGCGAACCCTCAG
CTCTACAACCTGATCACCAATGGCATCCTGCAGGCGCGGATCGACTACGACCGCTCGAAAGGGACTTGCAGA
GCGATCGCCGAGAAGATGGCTGACATCGCTGGCGAGCAGACCGGCTGGGGGAAAATCGCCGAAGGCCAGGCC
CTGGGCGCCACACTGGCCTCTGACGGGAAAGACGCCGTATCCGCCCTCGAAGCAGTGGAGAAGAAGGGCGGC
AACGATGGCGTAACCTGGGTTGGTGGAGACAAGGCCGGCGGCTCCGGCCAGAAGCCCATTCGCATCGTCAAC
GACGTGACCCGGGCGGGCTACAACCTGTTGACCAGCCGCTCGGTGAATGATTCGTCGAGCGTGCCTTCCGCC
ACTTGCAACAACGGCCTGGTCTGCAACACTTGGTCCTCCCCCCAGGAGGCCGCCGCATTCGCCACCCGGGTA
CTGGGGGAGCAACAGCAACAGACCTGCGAAGGCTGCCAGAAGACGGTGACGGCTGCTGGCGTCGGCCTCACC
CCGCTGATCCAGGAGACCTACGACAAGAAGCTCCAGTCGCTGCAGGAGCTGCTGTCGAAGAGCAAACCACTG
ACTGCAGAGAACCTGGCTGCGGCCGGCACCGATGCTCTGCCAATTACCCGCGGCGTCATCGAGGCGCTGCGC
GACGAGCGTGACCAGGACGTCCTGGCGCGCCGCCTGGCGTCCGATGTCTCCCTGATGGACGTGCTCAGCAAG
GCACTGCTACTGCAGCGCCTGATGTTCGCCGGCGCCAAGGAGCCCAACGTCGCCGCCAACGGCCTGGCCACC
CAAGCCGTCGATCAGCAGACCAGCCTCCTGCAGCAGGAGATCTCCAATCTCAAGACCGAACTGGAACTCCGT
CGCGAGTTGGCCAGCAACTCCCCCATGCGGGTCATCGAGCGCGGGCAACAACGCGCCTCAGGGTCCAGTGGC
GTGTTCGAGTCGGCGCCCGATGCCGATCGCCTCGATCGCCTGCAGGCCCCCTCTGCCGCCGGCGGCAAGTCG
GGAGGGAGACCGTGA
Translation:
MRMNITSVALMWLLAAQLAQADDPINVSKTGTVLSDEVLYSIGGGSAVSMGSAGQMDSIGVGFGWNNDMMCG
NMNLSTTLENQLNGATQGFQNIMGSVIQNATGAVMSLPALIIQRANPQLYNLITNGILQARIDYDRSKGTCR
AIAEKMADIAGEQTGWGKIAEGQALGATLASDGKDAVSALEAVEKKGGNDGVTWVGGDKAGGSGQKPIRIVN
DVTRAGYNLLTSRSVNDSSSVPSATCNNGLVCNTWSSPQEAAAFATRVLGEQQQQTCEGCQKTVTAAGVGLT
PLIQETYDKKLQSLQELLSKSKPLTAENLAAAGTDALPITRGVIEALRDERDQDVLARRLASDVSLMDVLSK
ALLLQRLMFAGAKEPNVAANGLATQAVDQQTSLLQQEISNLKTELELRRELASNSPMRVIERGQQRASGSSG
VFESAPDADRLDRLQAPSAAGGKSGGRP*
AnnotationID:1113GeneID:1104
AnnotatorUID: diggins
Modification Date/Time: 2006-01-31 06:06:19
Gene Name:
Confidence Code:5
GeneProduct:conserved hpothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAP13069.1| (AY254167) putative membrane protein [Pseudomonas syringae]
          Length = 406

 Score =  558 bits (1437), Expect = e-158
 Identities = 267/403 (66%), Positives = 330/403 (81%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
the ORF has been reported to be related to pathogensis
ReferenceID:2211
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17071
Author/Investigator(s): He,J., Baldini,R.L., Deziel,E., Saucier,M., et al
Title: The broad host range pathogen Pseudomonas aeruginosa strain PA14
PubMed: 14983043
MedLine:
Source:
Proc. Natl. Acad. Sci. U.S.A. 101 (8), 2530-2535 (2004)
Reference Type:Journal
Data:
URL:
ReferenceID:19353
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1104

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
67933 gb|AAP84143.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa] 460 99.56 99.78 0 2296.0
67934 gb|AAP94686.1| (AY258138) conserved hypothetical protein [Pseudomonas aeruginosa] 462 97.83 98.26 4 2252.0
67935 gb|AAO54383.1| (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 462 62.55 78.57 7 1526.0
67937 gb|AAN62272.1|AF440524_59 (AF440524) hypothetical protein [Pseudomonas aeruginosa] 473 59.61 72.72 19 1426.0
67939 emb|CAE92906.1| (AJ617740) hypothetical protein [Pseudomonas putida] 475 58.94 72.84 25 1373.0
GC ORFID: 44106How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL016Glimmer Score:
Start: 4606423Stop: 4607805
Length: 1383
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL016 460 Homolog: XAC2284 / Hypothetical protein / X.axonopodis pv. citri / 306 (AAM37137) translation of RL016Homolog Bit Score 889.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1657 (ORF: BLASTX 626.0), t_RL016 (ORF: GLIMMER)
GC ORF Sequence
ATGCGAATGAACATCACCTCGGTCGCGCTAATGTGGCTGCTCGCAGCGCAACTTGCCCAGGCCGACGACCCG
ATCAACGTGTCCAAGACCGGCACGGTGCTCAGCGACGAGGTCCTCTACAGCATTGGCGGCGGCAGTGCGGTG
AGCATGGGCAGCGCCGGCCAGATGGACTCGATCGGCGTCGGCTTCGGCTGGAACAACGACATGATGTGCGGA
AACATGAACCTGAGCACCACCCTGGAGAACCAGCTCAACGGTGCCACACAGGGTTTCCAGAACATCATGGGC
TCAGTCATCCAGAACGCGACCGGCGCGGTCATGTCGCTGCCGGCGTTGATCATCCAGCGCGCGAACCCTCAG
CTCTACAACCTGATCACCAATGGCATCCTGCAGGCGCGGATCGACTACGACCGCTCGAAAGGGACTTGCAGA
GCGATCGCCGAGAAGATGGCTGACATCGCTGGCGAGCAGACCGGCTGGGGGAAAATCGCCGAAGGCCAGGCC
CTGGGCGCCACACTGGCCTCTGACGGGAAAGACGCCGTATCCGCCCTCGAAGCAGTGGAGAAGAAGGGCGGC
AACGATGGCGTAACCTGGGTTGGTGGAGACAAGGCCGGCGGCTCCGGCCAGAAGCCCATTCGCATCGTCAAC
GACGTGACCCGGGCGGGCTACAACCTGTTGACCAGCCGCTCGGTGAATGATTCGTCGAGCGTGCCTTCCGCC
ACTTGCAACAACGGCCTGGTCTGCAACACTTGGTCCTCCCCCCAGGAGGCCGCCGCATTCGCCACCCGGGTA
CTGGGGGAGCAACAGCAACAGACCTGCGAAGGCTGCCAGAAGACGGTGACGGCTGCTGGCGTCGGCCTCACC
CCGCTGATCCAGGAGACCTACGACAAGAAGCTCCAGTCGCTGCAGGAGCTGCTGTCGAAGAGCAAACCACTG
ACTGCAGAGAACCTGGCTGCGGCCGGCACCGATGCTCTGCCAATTACCCGCGGCGTCATCGAGGCGCTGCGC
GACGAGCGTGACCAGGACGTCCTGGCGCGCCGCCTGGCGTCCGATGTCTCCCTGATGGACGTGCTCAGCAAG
GCACTGCTACTGCAGCGCCTGATGTTCGCCGGCGCCAAGGAGCCCAACGTCGCCGCCAACGGCCTGGCCACC
CAAGCCGTCGATCAGCAGACCAGCCTCCTGCAGCAGGAGATCTCCAATCTCAAGACCGAACTGGAACTCCGT
CGCGAGTTGGCCAGCAACTCCCCCATGCGGGTCATCGAGCGCGGGCAACAACGCGCCTCAGGGTCCAGTGGC
GTGTTCGAGTCGGCGCCCGATGCCGATCGCCTCGATCGCCTGCAGGCCCCCTCTGCCGCCGGCGGCAAGTCG
GGAGGGAGACCGTGA