ViewGene

Locus Name:
GeneID:
Location:

GeneID:1103
TrivialName: PA14_73220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73220
PAO1 Ortholog Locus:PA5552
Sequence Length:1365
Protein Length:454
Start: 6520946
Stop: 6519582
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08937.1|AE004967_8 (AE004967) glucosamine-1-phosphate acetyltransferase/N-acetylglucosamine-1-phosphate uridyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 453/454 (99%), Positives = 453/454 (99%)
Sequence:
ATGTCCCTTGAAATCGTGATTCTCGCCGCCGGCCAGGGCACCCGCATGCGTTCGGCCCTGCCCAAGGTCCTC
CATCCCATTGCCGGCAAGCCGATGCTCGGCCACGTCATCGACTGCGCGCGCCAGTTGCAGCCGGAACGGATC
CACGTGGTGATCGGCCACGGCGCGGATCTGGTGCGTGAGCGGATGGCCGCCGACGACCTGAATTTCGTGCTC
CAGGCCGAACAGCTCGGTACGGGCCATGCGGTGGCCCAGGCCCTGCCGTTCCTCAGTGCAGACCAGGTGCTG
ATCCTCTACGGCGACGTGCCGCTGATCCAGCTGGACACCTTGCAGCGCCTGCTGGCGCAAGTCACCCCGGAC
CAGTTGTCGCTGCTCACCGTCGACATGCTCGACCCCACCGGCTACGGCCGCATCGTCCGTGACGATCAGGGC
GCGGTGCAGGCCATCGTCGAGCACAAGGACGCGACCCCGGCGCAGCGCCAGATCGGCGAGATCAACACCGGC
ATCCTCGCGGTGCCGGGCAAGCGCCTTGCCGACTGGCTCGGCCGCCTGTCCAACGACAACGCCCAGGGCGAG
TACTACCTGACCGACGTGATCGCCATGGCGGTCGGCGACGGCCTGGTGGTAGCCAGCGCCCAACCGCTGGAC
GCGATGGAAGTGCAGGGTGTTAATGACCGCATGCAACAGGCCCAGCTGGAGCGTCACTACCAGCGCCTGCGC
GCGGAGGAGCTGATGCGCCAGGGCGTGACCCTGCTCGATCCGCAGCGCCTGGATGTCCGTGGCGAAATCTCG
GTCGGCCGCGACGTGCTGATCGACGTCAACGTGGTGCTGGAAGGCCGCGTGGTGATCGAGGACGACGTGCAC
ATCGGACCGAACTGCGTGATTCGCGACAGCGTCCTGCGGCGTGGCGCGGTGATCAAGGCCAACAGCCACCTG
GAAGGCGCGGAGCTGGGCGAGGGTAGCGATGCCGGTCCGTTCGCCCGCCTGCGTCCGGGCAGCGTGCTCGGC
GCTCGGGCCCATGTCGGCAACTTCGTCGAACTGAAGAATGCCCGCCTGGGCGAGGGCAGCAAGGCCGGCCAC
CTGAGCTACCTGGGCGATGCCGAGCTGGGCGCCAACTGCAATATCGGCGCCGGCACCATCACCTGCAACTAC
GATGGCGCGAACAAATTCCGCACCGAGCTGGGCGACGATGTGTTCATCGGCTCGAACAACTCGCTGGTGGCG
CCGCTGAAGATTGGCGATGGCGCGACGACCGCGGCCGGCTCCACCATCACCCATGAGGTTCCGGCGAAGAAC
CTGGCCTTCGGCCGCGCCCGGCAGAAGAACCTGGAAAACTGGAAGCGCCCGGAAAAAATCAAGAAGTAA
Translation:
MSLEIVILAAGQGTRMRSALPKVLHPIAGKPMLGHVIDCARQLQPERIHVVIGHGADLVRERMAADDLNFVL
QAEQLGTGHAVAQALPFLSADQVLILYGDVPLIQLDTLQRLLAQVTPDQLSLLTVDMLDPTGYGRIVRDDQG
AVQAIVEHKDATPAQRQIGEINTGILAVPGKRLADWLGRLSNDNAQGEYYLTDVIAMAVGDGLVVASAQPLD
AMEVQGVNDRMQQAQLERHYQRLRAEELMRQGVTLLDPQRLDVRGEISVGRDVLIDVNVVLEGRVVIEDDVH
IGPNCVIRDSVLRRGAVIKANSHLEGAELGEGSDAGPFARLRPGSVLGARAHVGNFVELKNARLGEGSKAGH
LSYLGDAELGANCNIGAGTITCNYDGANKFRTELGDDVFIGSNNSLVAPLKIGDGATTAAGSTITHEVPAKN
LAFGRARQKNLENWKRPEKIKK*
AnnotationID:1112GeneID:1103
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 17:05:34
Gene Name:glmU
Confidence Code:2
GeneProduct:glucosamine-1-phosphate acetyltransferase/N-acetyl
Cell Localization:()
Synonyms:gcaD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:UDP-N-acetylglucosamine pyrophosphorylase
Functional Category Confidence Code:5
COGs:COG1207, COG1208
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:2209
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17034
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI - Conserved Domain Search (BLASTP).
Reference Type:Blast (text/plain)
Data:PA5552_CDS.cgi
URL:
ReferenceID:19351
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1103

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1987 PA5552_tr translation of PA5552 454 99.77 99.77 0 2297.0
67821 gb|AAG08937.1|AE004967_8 (AE004967) glucosamine-1-phosphate acetyltransferase/N-acetylglucosamine-1-phosphate uridyltransferase [Pseudomonas aeruginosa PAO1] 454 99.77 99.77 0 2297.0
67822 gb|AAN70975.1|AE016742_4 (AE016794) UDP-N-acetylglucosamine pyrophosphorylase [Pseudomonas putida KT2440] 455 77.36 87.03 1 1809.0
67823 gb|AAO59010.1| (AE016876) UDP-N-acetylglucosamine pyrophosphorylase [Pseudomonas syringae pv. tomato str. DC3000] 455 77.14 85.49 1 1784.0
67824 gb|AAN57704.1|AE015907_2 (AE015907) UDP-N-acetylglucosamine pyrophosphorylase [Shewanella oneidensis MR-1] 455 59.56 73.84 2 1339.0
GC ORFID: 44105How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5552Glimmer Score:
Start: 5784635Stop: 5783271
Length: 1365
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA5552 translation of PA5552Homolog Bit Score 889.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4134 (ORF: BLASTX 690.0), t_PA5552 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCCTTGAAATCGTGATTCTCGCCGCCGGCCAGGGCACCCGCATGCGTTCGGCCCTGCCCAAGGTCCTC
CATCCCATTGCCGGCAAGCCGATGCTCGGCCACGTCATCGACTGCGCGCGCCAGTTGCAGCCGGAACGGATC
CACGTGGTGATCGGCCACGGCGCGGATCTGGTGCGTGAGCGGATGGCCGCCGACGACCTGAATTTCGTGCTC
CAGGCCGAACAGCTCGGTACGGGCCATGCGGTGGCCCAGGCCCTGCCGTTCCTCAGTGCAGACCAGGTGCTG
ATCCTCTACGGCGACGTGCCGCTGATCCAGCTGGACACCTTGCAGCGCCTGCTGGCGCAAGTCACCCCGGAC
CAGTTGTCGCTGCTCACCGTCGACATGCTCGACCCCACCGGCTACGGCCGCATCGTCCGTGACGATCAGGGC
GCGGTGCAGGCCATCGTCGAGCACAAGGACGCGACCCCGGCGCAGCGCCAGATCGGCGAGATCAACACCGGC
ATCCTCGCGGTGCCGGGCAAGCGCCTTGCCGACTGGCTCGGCCGCCTGTCCAACGACAACGCCCAGGGCGAG
TACTACCTGACCGACGTGATCGCCATGGCGGTCGGCGACGGCCTGGTGGTAGCCAGCGCCCAACCGCTGGAC
GCGATGGAAGTGCAGGGTGTTAATGACCGCATGCAACAGGCCCAGCTGGAGCGTCACTACCAGCGCCTGCGC
GCGGAGGAGCTGATGCGCCAGGGCGTGACCCTGCTCGATCCGCAGCGCCTGGATGTCCGTGGCGAAATCTCG
GTCGGCCGCGACGTGCTGATCGACGTCAACGTGGTGCTGGAAGGCCGCGTGGTGATCGAGGACGACGTGCAC
ATCGGACCGAACTGCGTGATTCGCGACAGCGTCCTGCGGCGTGGCGCGGTGATCAAGGCCAACAGCCACCTG
GAAGGCGCGGAGCTGGGCGAGGGTAGCGATGCCGGTCCGTTCGCCCGCCTGCGTCCGGGCAGCGTGCTCGGC
GCTCGGGCCCATGTCGGCAACTTCGTCGAACTGAAGAATGCCCGCCTGGGCGAGGGCAGCAAGGCCGGCCAC
CTGAGCTACCTGGGCGATGCCGAGCTGGGCGCCAACTGCAATATCGGCGCCGGCACCATCACCTGCAACTAC
GATGGCGCGAACAAATTCCGCACCGAGCTGGGCGACGATGTGTTCATCGGCTCGAACAACTCGCTGGTGGCG
CCGCTGAAGATTGGCGATGGCGCGACGACCGCGGCCGGCTCCACCATCACCCATGAGGTTCCGGCGAAGAAC
CTGGCCTTCGGCCGCGCCCGGCAGAAGAACCTGGAAAACTGGAAGCGCCCGGAAAAAATCAAGAAGTAA